BAC Information

Click to search

BAC

Clone NameB6Ng01-093N17
Chromosome8 (Build37)
Map Location 30,864,871 - 31,028,353
singlet/doubletdoublet
Overlap genenone
Upstream geneUnc5d, LOC100041237
Downstream geneEG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093N17.bB6Ng01-093N17.g
ACCDH905228DH905229
length1,1311,011
definitionDH905228|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N17, 5' end.DH905229|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,027,216 - 31,028,353)(30,864,871 - 30,865,872)
sequence
gaattcaatgacttgccaagtttcaaacgcaatctatggagtttaagttt
aatcatatacgtctaattatgtatttcacactgtgtctaccacagcactc
taacaagagcattgccagagcttttgttacattattctgttgtaaaattg
tttttcttctttgttgggtagaaaaatgagagtgattgtgccaaactaca
ggaatgcacatcttcactcacagatatgtagaaatgcccaagccctaagt
aatgtgaaaacaaagttgctctattctgttcagcagtttgttcggtatga
gttcactggagaagctaacttaagactatcctgcaggtaatattaagcta
aggcttgtggcaggagcataagaagctgggttttcaaaaactgccttaga
ttgattttatgatcacagaaaactaagaaacgctaattaaatccttgcct
ttcagaaaccataaaatttttcaaaagcagtccaaagatatgacttttca
taattctacaatttctatctcataaggactaaatataccttttgccttca
tggcagtaatgagtaatgagaactcattataaaaataaaaggaataaaga
taggattctgcagtgctctttattaacagtgtttcctggtgttttgtttc
ataacccccccttttcccctccaccccgccacacacacacacacacacac
acacacacacacacacacacacacactggcatctctgacatctttatgtt
cacccaaatttcatttctttcttatgttactttcaaagaaaataaaatca
ccttgaagtcttagattaaattcattttatatgaacaaagatttatctat
cttaactacctacttactatgtaggatttttcttggtgaaaaaaaatgat
atttacattttaatgaagggcatcaaaaatttcttttctttgattcaaat
gtaaattgaggaagatagggtcagaatttttctggtgtcataattgccat
aagtgaatggatctccctcatgatccaagattcacattgtcatctctcgc
atcatcttgtcaattgctattaaatatgatcttcttcttctttgctaggt
gagaagaaaaatgacattaattgacttcttt
gaattccctgccaccttgaaactcatctgttgggagcaggaaaagcactg
ctctctggtttactttgtgatggccacacagccatttaagcgtacatggg
tattagagctcacctccagggatctcagacctcagggtcctgtatctggt
ctgctttatcccaggattccctctacattaagaatccatgctgtacacag
aggaccttcagtatttattgtggaataagcatataacaaatcattccttt
tactcagatatattaagatcagaatcttttattaaaaaaaatcatctttt
gtcaaaacaagagtggtgcagaaaagcagctgagtgtgtgtgaggtatgt
aggaggagtgctacatagctactgcccagaacaagtaccctgaagggtga
ccatgcctaggggagtgggctgtttagggtcgagcaggaggctgatgcag
gcccgatgaggactcctctcacttacatggttggaacagtcaggttagag
tgacatgatgttggatgtttttattatctccataaaccaaagttctgaag
tgtatcgaggcacacagccagactttcactatgaataatgaacttaaatg
aggccttttgtgtgattatctgatgagtcatttgaatgcagttctctttg
aagatgcaggagaggggggaaaaaaaacccaacagcacaggatgtatttg
gacggtattcttgattcatggccctttcccttttgatttattattctgat
atacccaatttgaaaaggcaatagatggatactcagtgatagattatttt
gctttgtgttgaagaaaatcatgttggctaatctgaaagaagtatgatca
gccagggcatatttctcttctatgacctaagggaagcagaattgactcaa
aaattagtgttttttgtttgtttttagatgaaaaaaagaaaaacagaaaa
ttctttctctggaacctttttattatttcagaagtcacgtttgtgatgcc
aatgtatccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_31027216_31028353
seq2: B6Ng01-093N17.b_46_1176 (reverse)

seq1  AAAGAAGTCCAATTAAATGGTCATTTTCCTCCACCCTTAGCAAAGAAGAA  50
      |||||||| |||||||   |||||||| || | | | |||||||||||||
seq2  AAAGAAGT-CAATTAA--TGTCATTTTTCTTCTCACCTAGCAAAGAAGAA  47

seq1  GAAGAATTCATATTT-ATAGCAATTGACAGGATGGATTGCGAGAGATGAC  99
      |||||  |||||||| ||||||||||||| ||||   |||||||||||||
seq2  GAAGA--TCATATTTAATAGCAATTGACAAGATG--ATGCGAGAGATGAC  93

seq1  AATGTGAATCTTGGATTCATGAGGGGAGATTCTATTCCACTATGGCAATT  149
      ||||||||||||||| |||||| |||||| || ||||   ||||||||||
seq2  AATGTGAATCTTGGA-TCATGA-GGGAGA-TCCATTCACTTATGGCAATT  140

seq1  ATGACACCAGGAAAATTCTGACCCTATCTTCCTCAATTTACATTTTGAAT  199
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  ATGACACCAGAAAAATTCTGACCCTATCTTCCTCAATTTACA-TTTGAAT  189

seq1  CAAAG-AGAGAAATTTTTGATGCCCTTCATTAAAATGTAAATATCATTTT  248
      ||||| | |||||||||||||||||||||||||||||||||||||| |||
seq2  CAAAGAAAAGAAATTTTTGATGCCCTTCATTAAAATGTAAATATCA-TTT  238

seq1  TTTTTCACCAAG-AAAATCCTACATAGTAAGTAGGTAGTTAAGATAGATA  297
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACCAAGAAAAATCCTACATAGTAAGTAGGTAGTTAAGATAGATA  288

seq1  AATCTTTGTTCATATAAAATGAATTTAATCTAAGACTTCAAGGTGATTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGTTCATATAAAATGAATTTAATCTAAGACTTCAAGGTGATTTT  338

seq1  ATTTTCTTTGAAAGTAACATAAG-AAGAAATGAAATTTGGGTGAACATAA  396
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTTTCTTTGAAAGTAACATAAGAAAGAAATGAAATTTGGGTGAACATAA  388

seq1  AGATGTCAGAGATGCCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAGAGATGCCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  438

seq1  TGTGTGTGTGTGTGGCGGGGTGGAGGGGAAAAGGGGGGGTTATGAAACAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGGCGGGGTGGAGGGGAAAAGGGGGGGTTATGAAACAA  488

seq1  AACACCAGGAAACACTGTTAATAAAGAGCACTGCAGAATCCTATCTTTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAGGAAACACTGTTAATAAAGAGCACTGCAGAATCCTATCTTTAT  538

seq1  TCCTTTTATTTTTATAATGAGTTCTCATTACTCATTACTGCCATGAAGGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTATTTTTATAATGAGTTCTCATTACTCATTACTGCCATGAAGGC  588

seq1  AAAAGGTATATTTAGTCCTTATGAGATAGAAATTGTAGAATTATGAAAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTATATTTAGTCCTTATGAGATAGAAATTGTAGAATTATGAAAAG  638

seq1  TCATATCTTTGGACTGCTTTTGAAAAATTTTATGGTTTCTGAAAGGCAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTTTGGACTGCTTTTGAAAAATTTTATGGTTTCTGAAAGGCAAG  688

seq1  GATTTAATTAGCGTTTCTTAGTTTTCTGTGATCATAAAATCAATCTAAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAATTAGCGTTTCTTAGTTTTCTGTGATCATAAAATCAATCTAAGG  738

seq1  CAGTTTTTGAAAACCCAGCTTCTTATGCTCCTGCCACAAGCCTTAGCTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTGAAAACCCAGCTTCTTATGCTCCTGCCACAAGCCTTAGCTTA  788

seq1  ATATTACCTGCAGGATAGTCTTAAGTTAGCTTCTCCAGTGAACTCATACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACCTGCAGGATAGTCTTAAGTTAGCTTCTCCAGTGAACTCATACC  838

seq1  GAACAAACTGCTGAACAGAATAGAGCAACTTTGTTTTCACATTACTTAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAACTGCTGAACAGAATAGAGCAACTTTGTTTTCACATTACTTAGG  888

seq1  GCTTGGGCATTTCTACATATCTGTGAGTGAAGATGTGCATTCCTGTAGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGCATTTCTACATATCTGTGAGTGAAGATGTGCATTCCTGTAGTT  938

seq1  TGGCACAATCACTCTCATTTTTCTACCCAACAAAGAAGAAAAACAATTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAATCACTCTCATTTTTCTACCCAACAAAGAAGAAAAACAATTTT  988

seq1  ACAACAGAATAATGTAACAAAAGCTCTGGCAATGCTCTTGTTAGAGTGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAATAATGTAACAAAAGCTCTGGCAATGCTCTTGTTAGAGTGCT  1038

seq1  GTGGTAGACACAGTGTGAAATACATAATTAGACGTATATGATTAAACTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGACACAGTGTGAAATACATAATTAGACGTATATGATTAAACTTA  1088

seq1  AACTCCATAGATTGC-TTTGAAACTTGGCAAGTCATTGAATTC  1138
      ||||||||||||||| |||||||||||||||||||||||||||
seq2  AACTCCATAGATTGCGTTTGAAACTTGGCAAGTCATTGAATTC  1131

seq1: chr8_30864871_30865872
seq2: B6Ng01-093N17.g_70_1072

seq1  GAATTCCCTGCCACCTTGAAACTCATCTGTTGGGAGCAGGAAAAGCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGCCACCTTGAAACTCATCTGTTGGGAGCAGGAAAAGCACTG  50

seq1  CTCTCTGGTTTACTTTGTGATGGCCACACAGCCATTTAAGCGTACATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGTTTACTTTGTGATGGCCACACAGCCATTTAAGCGTACATGGG  100

seq1  TATTAGAGCTCACCTCCAGGGATCTCAGACCTCAGGGTCCTGTATCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGCTCACCTCCAGGGATCTCAGACCTCAGGGTCCTGTATCTGGT  150

seq1  CTGCTTTATCCCAGGATTCCCTCTACATTAAGAATCCATGCTGTACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTATCCCAGGATTCCCTCTACATTAAGAATCCATGCTGTACACAG  200

seq1  AGGACCTTCAGTATTTATTGTGGAATAAGCATATAACAAATCATTCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTCAGTATTTATTGTGGAATAAGCATATAACAAATCATTCCTTT  250

seq1  TACTCAGATATATTAAGATCAGAATCTTTTATTAAAAAAAATCATCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGATATATTAAGATCAGAATCTTTTATTAAAAAAAATCATCTTTT  300

seq1  GTCAAAACAAGAGTGGTGCAGAAAAGCAGCTGAGTGTGTGTGAGGTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAACAAGAGTGGTGCAGAAAAGCAGCTGAGTGTGTGTGAGGTATGT  350

seq1  AGGAGGAGTGCTACATAGCTACTGCCCAGAACAAGTACCCTGAAGGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGTGCTACATAGCTACTGCCCAGAACAAGTACCCTGAAGGGTGA  400

seq1  CCATGCCTAGGGGAGTGGGCTGTTTAGGGTCGAGCAGGAGGCTGATGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTAGGGGAGTGGGCTGTTTAGGGTCGAGCAGGAGGCTGATGCAG  450

seq1  GCCCGATGAGGACTCCTCTCACTTACATGGTTGGAACAGTCAGGTTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGATGAGGACTCCTCTCACTTACATGGTTGGAACAGTCAGGTTAGAG  500

seq1  TGACATGATGTTGGATGTTTTTATTATCTCCATAAACCAAAGTTCTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGATGTTGGATGTTTTTATTATCTCCATAAACCAAAGTTCTGAAG  550

seq1  TGTATCGAGGCACACAGCCAGACTTTCACTATGAATAATGAACTTAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCGAGGCACACAGCCAGACTTTCACTATGAATAATGAACTTAAATG  600

seq1  AGGCCTTTTGTGTGATTATCTGATGAGTCATTTGAATGCAGTTCTCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTTTGTGTGATTATCTGATGAGTCATTTGAATGCAGTTCTCTTTG  650

seq1  AAGATGCAGGAGAGGGGGGAAAAAAAACCCAACAGCACAGGATGTATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCAGGAGAGGGGGGAAAAAAAACCCAACAGCACAGGATGTATTTG  700

seq1  GACGGTATTCTTGATTCATGG-CCTTTCCCTTTTGATTTATTATTCTGAT  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACGGTATTCTTGATTCATGGCCCTTTCCCTTTTGATTTATTATTCTGAT  750

seq1  ATACCCAATTTGAAAAGGCAATAGATGGATACTCAGTGATAGATTATTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAATTTGAAAAGGCAATAGATGGATACTCAGTGATAGATTATTTT  800

seq1  GCTTTTGTG-TGAAGAAAATCATGTTGGCTAACCTGAAAGAAGTATGATC  848
      || |||||| |||||||||||||||||||||| |||||||||||||||||
seq2  GC-TTTGTGTTGAAGAAAATCATGTTGGCTAATCTGAAAGAAGTATGATC  849

seq1  AGCCAGGGCATATTTCTCTTCTATGACCTAAAGGGAAGCAGAATTGACTC  898
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCCAGGGCATATTTCTCTTCTATGACCT-AAGGGAAGCAGAATTGACTC  898

seq1  AAAAATTAGTGTTTTTTGTTTTGTTTTTAGATGAAAAAAAGAAAAACAG-  947
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  AAAAATTAGTGTTTTTTG-TTTGTTTTTAGATGAAAAAAAGAAAAACAGA  947

seq1  AAATTCTTTC-CTGGAAGCTTTTTATTTATTTCAGAAGTCACAGTTGT-A  995
      |||||||||| |||||| ||||||| ||||||||||||||||  |||| |
seq2  AAATTCTTTCTCTGGAACCTTTTTA-TTATTTCAGAAGTCACGTTTGTGA  996

seq1  TGCCAAT  1002
      |||||||
seq2  TGCCAAT  1003