BAC Information

Click to search

BAC

Clone NameB6Ng01-094C20
Chromosome8 (Build37)
Map Location 8,785,273 - 8,921,181
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneTmem28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094C20.bB6Ng01-094C20.g
ACCDH905465DH905466
length500865
definitionDH905465|Mus musculus domesticus DNA, BAC clone: B6Ng01-094C20, 5' end.DH905466|Mus musculus domesticus DNA, BAC clone: B6Ng01-094C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,920,676 - 8,921,181)(8,785,273 - 8,786,133)
sequence
actggatggtgtctctagttagtgccatctctctacagagagtttaggtg
cttgttgatgagggagaatctctgcccacatttagagaccagagatcacg
atgtcctctgtattaattactgaataagaacatagaatataatacttcat
ctgcccactcctatattgccaggcctttccttcttcatccttcagccgtt
gactactgcggagggccaaaatctaaggagacccaggaccattttacaga
aatacagcagtgatatcctttgaataataatggtaataataatatgccaa
gcattatacattgttttgataaacttcagttggctgaaacctgttcttta
tatattcttctctctctctctctctctctgtctctccctctctcatgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctaattgtaactgtatta
aagagcagccttgggaagcaagtatataaagaacaagactggggctgggt


gaattccacatgaaaaataaaaatcatttctttttttttaatttatttat
aaactataaaacccagggcaaatggtttctattagcttcatggccatttt
ctcatagtgagaacaacatgaaagcacgattgtttacgtgggcagttgta
agcagaaaagataaacattaacccaaagaggacggaaggatagctcggct
gtcctgtggttaaacactggaaggttttagaatctctaagcatatttaat
ttctaaatgtaggatcaaaactagctcaggaagaatagagccttcctatg
atagttttgctatttaaacatataatacttaagtcatacttaggtcagaa
caataaaatatatgaaacatgaatcctaattctgatctgaagtggtaaga
aactgtacttaaaattttagtgctataaaaaaacccatcatggagctggg
cgtggtggcgcatgcctttaatcccagcacttgggaggcagaggcaggcg
gatttctgagttcaaggccagcctggtctacaaagtgagttccaggacag
ccaaggctacacagagataccctgtggcaacaaaacaaaacaaaacaaaa
acccaaaaaaaccaaaacatcatggagaggtgaggtggggatcaaaccct
cttgctcctagccgaggcgctatggtgcagtggggagagggggagagaat
caattttttctaaagtatgcggtccatggtaagtccgctgtgttccagta
gaaggccacacatgcacagtgtatgagttagcatgaatcgggcttgatgg
gttaaatacgaggaacacttgaaatagagtgggaaggggctacaatttgg
gaagacccggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_8920676_8921181
seq2: B6Ng01-094C20.b_43_548 (reverse)

seq1  ACCCAG-CCCAGTCTTTGTTCTTTATATACTTGCTTCCCAAGGCTGTTCT  49
      |||||| ||||||| ||||||||||||||||||||||||||||||| |||
seq2  ACCCAGCCCCAGTC-TTGTTCTTTATATACTTGCTTCCCAAGGCTGCTCT  49

seq1  TTAATAAAGTTAAAATTAGACACACACACACACACACACACACACACACA  99
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  TTAATACAGTTACAATTAGACACACACACACACACACACACACACACACA  99

seq1  CACACATGAGAGAGGGAGAGACAGAGAGAGAGAGAGAGAGAGAAGAATAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGAGAGAGGGAGAGACAGAGAGAGAGAGAGAGAGAGAAGAATAT  149

seq1  ATAAAGAACAGGTTTCAGCCAACTGAAGTTTATCAAAACAATGTATAATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAACAGGTTTCAGCCAACTGAAGTTTATCAAAACAATGTATAATG  199

seq1  CTTGGCATATTATTATTACCATTATTATTCAAAGGATATCACTGCTGTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCATATTATTATTACCATTATTATTCAAAGGATATCACTGCTGTAT  249

seq1  TTCTGTAAAATGGTCCTGGGTCTCCTTAGATTTTGGCCCTCCGCAGTAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAAATGGTCCTGGGTCTCCTTAGATTTTGGCCCTCCGCAGTAGT  299

seq1  CAACGGCTGAAGGATGAAGAAGGAAAGGCCTGGCAATATAGGAGTGGGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGCTGAAGGATGAAGAAGGAAAGGCCTGGCAATATAGGAGTGGGCA  349

seq1  GATGAAGTATTATATTCTATGTTCTTATTCAGTAATTAATACAGAGGACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTATTATATTCTATGTTCTTATTCAGTAATTAATACAGAGGACA  399

seq1  TCGTGATCTCTGGTCTCTAAATGTGGGCAGAGATTCTCCCTCATCAACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATCTCTGGTCTCTAAATGTGGGCAGAGATTCTCCCTCATCAACAA  449

seq1  GCACCTAAACTCTCTGTAGAGAGATGGCACTAACTAGAGACACCATCCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTAAACTCTCTGTAGAGAGATGGCACTAACTAGAGACACCATCCAG  499

seq1  TGAATTC  506
      |||||||
seq2  TGAATTC  506


seq1: chr8_8785273_8786133
seq2: B6Ng01-094C20.g_68_932

seq1  GAATTCCACATGAAAAATAAAAATCATTTCTTTTTTTTTAATTTATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATGAAAAATAAAAATCATTTCTTTTTTTTTAATTTATTTAT  50

seq1  AAACTATAAAACCCAGGGCAAATGGTTTCTATTAGCTTCATGGCCATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAAAACCCAGGGCAAATGGTTTCTATTAGCTTCATGGCCATTTT  100

seq1  CTCATAGTGAGAACAACATGAAAGCACGATTGTTTACGTGGGCAGTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGTGAGAACAACATGAAAGCACGATTGTTTACGTGGGCAGTTGTA  150

seq1  AGCAGAAAAGATAAACATTAACCCAAAGAGGACGGAAGGATAGCTCGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAAGATAAACATTAACCCAAAGAGGACGGAAGGATAGCTCGGCT  200

seq1  GTCCTGTGGTTAAACACTGGAAGGTTTTAGAATCTCTAAGCATATTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGGTTAAACACTGGAAGGTTTTAGAATCTCTAAGCATATTTAAT  250

seq1  TTCTAAATGTAGGATCAAAACTAGCTCAGGAAGAATAGAGCCTTCCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATGTAGGATCAAAACTAGCTCAGGAAGAATAGAGCCTTCCTATG  300

seq1  ATAGTTTTGCTATTTAAACATATAATACTTAAGTCATACTTAGGTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTGCTATTTAAACATATAATACTTAAGTCATACTTAGGTCAGAA  350

seq1  CAATAAAATATATGAAACATGAATCCTAATTCTGATCTGAAGTGGTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAATATATGAAACATGAATCCTAATTCTGATCTGAAGTGGTAAGA  400

seq1  AACTGTACTTAAAATTTTAGTGCTATAAAAAAACCCATCATGGAGCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTACTTAAAATTTTAGTGCTATAAAAAAACCCATCATGGAGCTGGG  450

seq1  CGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCG  500

seq1  GATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG  550

seq1  CCAAGGCTACACAGAGAAACCCTGTGGCAACAAAACAAAACAAAACAAAA  600
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCAAGGCTACACAGAGATACCCTGTGGCAACAAAACAAAACAAAACAAAA  600

seq1  ACC--AAAAAACCAAAACATCATGGAGAGGTGAGGT-GGGATCAAA-CCT  646
      |||  ||||||||||||||||||||||||||||||| ||||||||| |||
seq2  ACCCAAAAAAACCAAAACATCATGGAGAGGTGAGGTGGGGATCAAACCCT  650

seq1  CTTGCTCCTAGCCGAGGCGCTATGGTGCAGTGGGGAGAGGGGGAGAGAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCCTAGCCGAGGCGCTATGGTGCAGTGGGGAGAGGGGGAGAGAAT  700

seq1  CAA-TTTTTCTAAAGTATGCGGTCCATGGTAGGTCCGCTGTGTTCCAGTA  745
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAATTTTTTCTAAAGTATGCGGTCCATGGTAAGTCCGCTGTGTTCCAGTA  750

seq1  GAAGGCCACACATGCACCAGTGTATG-GGTAGCATGAATCGGGCTTGATG  794
      |||||||||||||||| ||||||||| | |||||||||||||||||||||
seq2  GAAGGCCACACATGCA-CAGTGTATGAGTTAGCATGAATCGGGCTTGATG  799

seq1  GGTTAAATACGAAGAAGACGTGAAATTGAGTGGGAAGGGGCTTAAGTCTG  844
      |||||||||||| ||| || |||||| |||||||||||||||  | | ||
seq2  GGTTAAATACGAGGAACACTTGAAATAGAGTGGGAAGGGGCTACAATTTG  849

seq1  GGAAGACGCGGGAGAGG  861
      ||||||| | |||||||
seq2  GGAAGAC-CCGGAGAGG  865


| Home | SequenceCutter | Blast | Download |