BAC Information

Click to search

BAC

Clone NameB6Ng01-094H21
Chromosome8 (Build37)
Map Location 109,101,932 - 109,288,204
singlet/doubletdoublet
Overlap geneCdh1, Tmco7
Upstream geneEG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734
Downstream geneHas3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094H21.bB6Ng01-094H21.g
ACCDH905700DH905701
length6441,042
definitionDH905700|Mus musculus domesticus DNA, BAC clone: B6Ng01-094H21, 5' end.DH905701|Mus musculus domesticus DNA, BAC clone: B6Ng01-094H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,101,932 - 109,102,574)(109,287,158 - 109,288,204)
sequence
gaattcactctgtagcccaagctggcctcagactcagagatccctctgcc
tcccaagtgctaggactaaaagtgtgtgccaccacatcaggtgacttgtt
ttaaaattatatttattgtgtgtatggtccaagtgccacagtgcacatgt
ggaggtcaaagaatagcttgtgggagctgtttctctctccttccaccatg
tgagttctgggaatcctaactcaggtccctgggcttggtaatagtcatga
actatttcattgtcccagaatctgcttgctaggcatctcaagagtatctc
cctggtgggtctcaagctgatatcttatctccagaactcaccacagccag
agtgctgagcacagtaccagggactcctacgattgctgagctgaaatctg
agaagaacctccgactctcataggtaattttcctataatggaatttaatg
gctgctctctctctctctctctctctctctctctctctctctctctctta
tacttttctcactctttgtcctctttattttcccacaggtgtctttataa
ctgaatgctgtccagatcctcccacgtactgagaggcccctgtgtttgtc
tttatctctgagacaggatttccatgtatgtgccacaatgcatc
gaattccccaaagagacaacccacctcataggtacaaacataaaactgca
cttcaaaatgttctaattaattttcttaccaagagagaaccagaagtctc
attttaaaattgcctatttatgtatttacctactaggtgcctttcttatt
aatatctaggaactccttatgtgataaaggtattaactgcttgccttttg
gtaagagaaagaggttcactgtgataaagctatgacataatccatgtcat
tctatatgcataactatgtgctttttaggagactcacaagccttgtgcaa
ccatcgctctgttaactgtgtaacatcttcatggctccaaaagggaggct
ccccctcctttgccactttcccttttcatcctgagcctcagagactgcag
atacatcttctatctcaatacacttacacccaaaagccgttttcctagga
aatctttggttgttgactttgcattaaattaaaactatgttggcttttgg
acacaaatgtgttttaagaccttaggaggtcaaatcttttcggctttctt
cctgatttctctgcctagaaatattttctgtgctcatttcctgtaatttt
tttcccttttggttcattaattctctccctggttgtgtttgtctttgttt
agttactctttgttttgagatgttcccttaaaaacaaagtttgatggttt
gtttgggtttttgttgttgttgtttctcacttcctaatgttattgtcaag
tttatcctgtatttctttaaatacagtaagcagaattatttcttcatttg
tgagcaacaaatctagtatctgaagtagcactggaccttgtttttttgta
tttgattatgaacagctctgtgctagtgactgactttaagaattactgtg
gagggagaagtgggtgctactggaatgggcagcagagtgttgttttggag
atgaaagttttaatggtagtgatgacagctatacaatactattgaaaatt
agtggccatgaaatgtaaaaggctcaggtgtccaattttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109101932_109102574
seq2: B6Ng01-094H21.b_48_691

seq1  GAATTCACTCTGTAGCCCAAGCTGGCCTCAGACTCAGAGATCCCTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGCCCAAGCTGGCCTCAGACTCAGAGATCCCTCTGCC  50

seq1  TCCCAAGTGCTAGGACTAAAAGTGTGTGCCACCACATCAGGTGACTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTAGGACTAAAAGTGTGTGCCACCACATCAGGTGACTTGTT  100

seq1  TTAAAATTATATTTATTGTGTGTATGGTCCAAGTGCCACAGTGCACATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTATATTTATTGTGTGTATGGTCCAAGTGCCACAGTGCACATGT  150

seq1  GGAGGTCAAAGAATAGCTTGTGGGAGCTGTTTCTCTCTCCTTCCACCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCAAAGAATAGCTTGTGGGAGCTGTTTCTCTCTCCTTCCACCATG  200

seq1  TGAGTTCTGGGAATCCTAACTCAGGTCCCTGGGCTTGGTAATAGTCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTGGGAATCCTAACTCAGGTCCCTGGGCTTGGTAATAGTCATGA  250

seq1  ACTATTTCATTGTCCCAGAATCTGCTTGCTAGGCATCTCAAGAGTATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCATTGTCCCAGAATCTGCTTGCTAGGCATCTCAAGAGTATCTC  300

seq1  CCTGGTGGGTCTCAAGCTGATATCTTATCTCCAGAACTCACCACAGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGGTCTCAAGCTGATATCTTATCTCCAGAACTCACCACAGCCAG  350

seq1  AGTGCTGAGCACAGTACCAGGGACTCCTACGATTGCTGAGCTGAAATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGAGCACAGTACCAGGGACTCCTACGATTGCTGAGCTGAAATCTG  400

seq1  AGAAGAACCTCCGACTCTCATAGGTAATTTTCCTATAATGGAATTTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAACCTCCGACTCTCATAGGTAATTTTCCTATAATGGAATTTAATG  450

seq1  GCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  GCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTA  500

seq1  CTCTTTCAAAGCCACTTGGCCTCTTTATTAACCTACAGGTGTCTTGAGAC  550
        ||||     |   ||| ||||||||||  || ||||||||||| | | 
seq2  TACTTTTCTCACTCTTTGTCCTCTTTATTTTCCCACAGGTGTCTTTATAA  550

seq1  TTGATTCCTGTCTAGATCCCTCTTATTCCAGAAAGGCTTCTGGGTTTGTC  600
       ||| | ||||| ||||||  |    | | || ||||  ||| |||||||
seq2  CTGAATGCTGTCCAGATCCTCCCACGTACTGAGAGGCCCCTGTGTTTGTC  600

seq1  ATT-CCTCAGTGACAGGATTTCCATGTACCTGCATCAATGCATC  643
       ||  ||| | |||||||||||||||||  |||  |||||||||
seq2  TTTATCTCTGAGACAGGATTTCCATGTATGTGCCACAATGCATC  644

seq1: chr8_109287158_109288204
seq2: B6Ng01-094H21.g_66_1107 (reverse)

seq1  CATAAAATTTGACACTTGAGCCTTTTTAACATTTCATTGGCACTAATTTT  50
      ||||||||| ||||| ||||||||||  ||||||||| | |||||| |||
seq2  CATAAAATTGGACACCTGAGCCTTTT--ACATTTCATGGCCACTAA-TTT  47

seq1  TTCATAGTATTGTATAGCTGTCATCACTACCATTAAAACTTTCATCCTCC  100
      |  |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCAATAGTATTGTATAGCTGTCATCACTACCATTAAAACTTTCAT-CTCC  96

seq1  AAAACAAACACTCTGCTGCCCATTCCAGTAGCACCCACTTCTCCCTCCAC  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAC-AACACTCTGCTGCCCATTCCAGTAGCACCCACTTCTCCCTCCAC  145

seq1  AGTAATTCTTAAAGTCAGTCACTAGCACAGAGCTGTTCATAATCAAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTCTTAAAGTCAGTCACTAGCACAGAGCTGTTCATAATCAAATAC  195

seq1  AAAAAAACAAGGTCCAGTGCTACTTCAGATACTAGATTTGTTGCTCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAGGTCCAGTGCTACTTCAGATACTAGATTTGTTGCTCACAA  245

seq1  ATGAAGAAATAATTCTGCTTACTGTATTTAAAGAAATACAGGATAAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAATAATTCTGCTTACTGTATTTAAAGAAATACAGGATAAACTT  295

seq1  GACAATAACATTAGGAAGTGAGAAACAACAACAACAAAAACCCAAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAACATTAGGAAGTGAGAAACAACAACAACAAAAACCCAAACAAA  345

seq1  CCATCAAACTTTGTTTTTAAGGGAACATCTCAAAACAAAGAGTAACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAACTTTGTTTTTAAGGGAACATCTCAAAACAAAGAGTAACTAAA  395

seq1  CAAAGACAAACACAACCAGGGAGAGAATTAATGAACCAAAAGGGAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAAACACAACCAGGGAGAGAATTAATGAACCAAAAGGGAAAAAA  445

seq1  ATTACAGGAAATGAGCACAGAAAATATTTCTAGGCAGAGAAATCAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGGAAATGAGCACAGAAAATATTTCTAGGCAGAGAAATCAGGAAG  495

seq1  AAAGCCGAAAAGATTTGACCTCCTAAGGTCTTAAAACACATTTGTGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCGAAAAGATTTGACCTCCTAAGGTCTTAAAACACATTTGTGTCCA  545

seq1  AAAGCCAACATAGTTTTAATTTAATGCAAAGTCAACAACCAAAGATTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAACATAGTTTTAATTTAATGCAAAGTCAACAACCAAAGATTTCC  595

seq1  TAGGAAAACGGCTTTTGGGTGTAAGTGTATTGAGATAGAAGATGTATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAACGGCTTTTGGGTGTAAGTGTATTGAGATAGAAGATGTATCTG  645

seq1  CAGTCTCTGAGGCTCAGGATGAAAAGGGAAAGTGGCAAAGGAGGGGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTGAGGCTCAGGATGAAAAGGGAAAGTGGCAAAGGAGGGGGAGC  695

seq1  CTCCCTTTTGGAGCCATGAAGATGTTACACAGTTAACAGAGCGATGGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTTGGAGCCATGAAGATGTTACACAGTTAACAGAGCGATGGTTG  745

seq1  CACAAGGCTTGTGAGTCTCCTAAAAAGCACATAGTTATGCATATAGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCTTGTGAGTCTCCTAAAAAGCACATAGTTATGCATATAGAATG  795

seq1  ACATGGATTATGTCATAGCTTTATCACAGTGAACCTCTTTCTCTTACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATTATGTCATAGCTTTATCACAGTGAACCTCTTTCTCTTACCAA  845

seq1  AAGGCAAGCAGTTAATACCTTTATCACATAAGGAGTTCCTAGATATTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGCAGTTAATACCTTTATCACATAAGGAGTTCCTAGATATTAAT  895

seq1  AAGAAAGGCACCTAGTAGGTAAATACATAAATAGGCAATTTTAAAATGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGCACCTAGTAGGTAAATACATAAATAGGCAATTTTAAAATGAG  945

seq1  ACTTCTGGTTCTCTCTTGGTAAGAAAATTAATTAGAACATTTTGAAGTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGTTCTCTCTTGGTAAGAAAATTAATTAGAACATTTTGAAGTGC  995

seq1  AGTTTTATGTTTGTACCTATGAGGTGGGTTGTCTCTTTGGGGAATTC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATGTTTGTACCTATGAGGTGGGTTGTCTCTTTGGGGAATTC  1042