BAC Information

Click to search

BAC

Clone NameB6Ng01-096H13
Chromosome8 (Build37)
Map Location 120,120,054 - 120,314,892
singlet/doubletdoublet
Overlap genePlcg2, 4632417N05Rik, Hsd17b2
Upstream geneCdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik
Downstream geneMphosph6, Cdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096H13.bB6Ng01-096H13.g
ACCDH907111DH907112
length1,2291,033
definitionDH907111|Mus musculus domesticus DNA, BAC clone: B6Ng01-096H13, 5' end.DH907112|Mus musculus domesticus DNA, BAC clone: B6Ng01-096H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,313,643 - 120,314,892)(120,120,054 - 120,121,089)
sequence
gaattctggagggtaccacatctgagactatgtaagcacctaagatacag
taagggccccacccccagattagaaacagtgccgactcgtacacagatgt
agacggcatccttgtgtttacgctgtggtgtttggggtatacaagaaagt
cggcaccttcaacatccctacaacttcttccccaaagtgttcattttgag
acagggtcctactatggctggcttggaacttgctattgaaaccaggctat
cttcatactcacaaagatctgcctgccccttcctccccagtgctgggatt
aaaagtgggggccaccacactcaagccttcccttccctgaatatttggat
cacagatactgagcccatagatacaggcatccagtcatacctggcctctg
gcattcacttggagctgagcaacctcattcctccgatgccagccagcttc
tttctgaaatacctcagtagagatgggagggaaggccggatgaaacggga
cgaatcttcctcatgcagctgctttggtccctatttctttgtccacccta
ccaaaacagcctatggcatcccttcagagaagggctctggtagctcaccc
cagcgcaccaactaaagagaagaaatggttaaaaaaaaaaaagtgattgg
ttcagtgtccacattgagaagggagcagataaaggggacatgaggacagc
aagaactctggctcaccttgaagaaccagattcggctcagactgcctaac
tctgcagacctcttgccctgccccaattcttgccactttagcctaaagta
cctcaaagaccctgtgggggtcactggacccttctacccatttacaatga
gatcgcgtctgttccaaggggcagccttgctgtcatggaggatggagccc
attttgggtgaggaccagactgtcttgggtttttgggctttttttgtttg
tttgtttgttttgtttgttttgttttttacctctggagagctaagggatt
cgtcagttaagatacgacttaacctttgtgccttcagctttacaggatga
agacgagaacaggtagatgacactgaaggctccggtcgtctctacgaagg
gtggggcagaaggcctgattaatttccgagtcagctgtttcaaggtgctt
ggtggcagactgctaggtcactcccacttgaagacctggctgcatcatgc
cacgaccaatggaactcagacagtgggtt
gaattctcttcatttcggtcccctaaggacgggtaacaaggctgtggctg
attgctgtagctgctagcatccttggtttgttaatcccctgtggtcctct
cccttaagggccaggggcaaggtgaaacattgtcgcatcaaccgggacgg
acgccacttcgtgctgggcacctctgcctactttgagagcctggtggagc
ttgtcagctactacgagaagcacgcgctctatcgcaagatgaggcttcga
taccccgtgaccccggagctcctggagcgatataatatggtaggttgacg
cccttgggcttgttagtcatatcacggtctacattttagagatacaatgt
gcatacatttacatatattactgtatgtctgcgataggaggtcctgagga
tgcagacttggccaccgtttacaaagactctgtccccatgcgactgatag
tggaggttgggagaggcaggcgatgcattagaaataaacacagacagagt
cagatggtaatatatgtaaagagagagggctgggacggcgtagcagggta
tgaagagatggggcagtggcttgcagttttcaaaggttctggggcgatct
tcctgaggagtgagccatgcagatatctggaggagaaagaacagcagaag
caaaagccttggggtggtcaacaggcatgaaatgagcccagcgagagcaa
cgctgaatgatgaatgaggctggggctgagattccagaaagttcatgtag
ggcctggtgggccatgggaaggcactggctctttatctcgttacactgca
gggtcctgagtgcacagaaggccgggatatgggtcatgatatctcacttt
cctgtcagaaggatccttgatttcctgagaggagacagattctgagggct
ggttagtgttgcttgtcacttgacacagcctagaatcagcaggaagagtc
ttagcgagaaacttcctagctcagttggcccatgggcatgtctatgggag
ctctctggattgtcatgatgtaggaagcccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_120313643_120314892
seq2: B6Ng01-096H13.b_49_1277 (reverse)

seq1  AACCCACTGTCTTGGTGTCAAATGGGGTGCGGTGGGCCATGATAGCAGGC  50
      ||||||||||||  || || | ||    |  ||||  |||||| |||| |
seq2  AACCCACTGTCTGAGT-TCCATTG----GTCGTGG--CATGAT-GCAGCC  42

seq1  AGATGTCATCAGAGTGGGAAGTGGACACCTAGCAGTACTG-CAACAAGCA  99
      ||  ||| ||| |||||| ||||   |||||||||| ||| || ||||||
seq2  AG--GTCTTCA-AGTGGG-AGTG---ACCTAGCAGT-CTGCCACCAAGCA  84

seq1  -CTTGAAACAGCTGACTCTGAAAAAATAATCAGG-CTTCTGCCC--ACCT  145
       ||||||||||||||||| |  ||| |||||||| |||||||||   |||
seq2  CCTTGAAACAGCTGACTCGG--AAATTAATCAGGCCTTCTGCCCCACCCT  132

seq1  CTGTAGAGACGAACGGAGCCTTCAGTGTCATCTACCTG-TCTCGTCTCAT  194
        |||||||||| ||||||||||||||||||||||||| ||||||||   
seq2  TCGTAGAGACGACCGGAGCCTTCAGTGTCATCTACCTGTTCTCGTCTTCA  182

seq1  TCCTGTTAAAGCTGAAGGCACAAAGGTTAAGTCGTTATCTTAAACTGACG  244
      ||||| |||||||||||||||||||||||||||| |||||| ||||||||
seq2  TCCTG-TAAAGCTGAAGGCACAAAGGTTAAGTCG-TATCTT-AACTGACG  229

seq1  AATCACCTTAGCTCTCCAGAGGTAAAAAAACAAAAACAAACAAAAACAAA  294
      |||| ||||||||||||||||||||||||   ||||||||| ||||||||
seq2  AATC-CCTTAGCTCTCCAGAGGTAAAAAA--CAAAACAAAC-AAAACAAA  275

seq1  CAAACAAACAAAAAAAAGCCCAAAAAACCCAAGACAGTCTGGTCCTCACC  344
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  CAAACAAAC-AAAAAAAGCCC-AAAAACCCAAGACAGTCTGGTCCTCACC  323

seq1  CAAAATGGGCTCCATCCTCCATGACAGCAAGGCTGCCCCTTGGAACAGAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGGCTCCATCCTCCATGACAGCAAGGCTGCCCCTTGGAACAGAC  373

seq1  GCGATCTCATTGTAAATGGGTAGAAGGGTCCAGTGACCCCCACAGGGTCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATCTCATTGTAAATGGGTAGAAGGGTCCAGTGACCCCCACAGGGTCT  423

seq1  TTGAGGTACTTTAGGCTAAAGTGGCAAGAATTGGGGCAGGGCAAGAGGTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTACTTTAGGCTAAAGTGGCAAGAATTGGGGCAGGGCAAGAGGTC  473

seq1  TGCAGAGTTAGGCAGTCTGAGCCGAATCTGGTTCTTCAAGGTGAGCCAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGTTAGGCAGTCTGAGCCGAATCTGGTTCTTCAAGGTGAGCCAGA  523

seq1  GTTCTTGCTGTCCTCATGTCCCCTTTATCTGCTCCCTTCTCAATGTGGAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGCTGTCCTCATGTCCCCTTTATCTGCTCCCTTCTCAATGTGGAC  573

seq1  ACTGAACCAATCACTTTTTTTTTTTTAACCATTTCTTCTCTTTAGTTGGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCAATCACTTTTTTTTTTTTAACCATTTCTTCTCTTTAGTTGGT  623

seq1  GCGCTGGGGTGAGCTACCAGAGCCCTTCTCTGAAGGGATGCCATAGGCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGGGTGAGCTACCAGAGCCCTTCTCTGAAGGGATGCCATAGGCTG  673

seq1  TTTTGGTAGGGTGGACAAAGAAATAGGGACCAAAGCAGCTGCATGAGGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTAGGGTGGACAAAGAAATAGGGACCAAAGCAGCTGCATGAGGAA  723

seq1  GATTCGTCCCGTTTCATCCGGCCTTCCCTCCCATCTCTACTGAGGTATTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGTCCCGTTTCATCCGGCCTTCCCTCCCATCTCTACTGAGGTATTT  773

seq1  CAGAAAGAAGCTGGCTGGCATCGGAGGAATGAGGTTGCTCAGCTCCAAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAGCTGGCTGGCATCGGAGGAATGAGGTTGCTCAGCTCCAAGT  823

seq1  GAATGCCAGAGGCCAGGTATGACTGGATGCCTGTATCTATGGGCTCAGTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCAGAGGCCAGGTATGACTGGATGCCTGTATCTATGGGCTCAGTA  873

seq1  TCTGTGATCCAAATATTCAGGGAAGGGAAGGCTTGAGTGTGGTGGCCCCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATCCAAATATTCAGGGAAGGGAAGGCTTGAGTGTGGTGGCCCCC  923

seq1  ACTTTTAATCCCAGCACTGGGGAGGAAGGGGCAGGCAGATCTTTGTGAGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAATCCCAGCACTGGGGAGGAAGGGGCAGGCAGATCTTTGTGAGT  973

seq1  ATGAAGATAGCCTGGTTTCAATAGCAAGTTCCAAGCCAGCCATAGTAGGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATAGCCTGGTTTCAATAGCAAGTTCCAAGCCAGCCATAGTAGGA  1023

seq1  CCCTGTCTCAAAATGAACACTTTGGGGAAGAAGTTGTAGGGATGTTGAAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCAAAATGAACACTTTGGGGAAGAAGTTGTAGGGATGTTGAAG  1073

seq1  GTGCCGACTTTCTTGTATACCCCAAACACCACAGCGTAAACACAAGGATG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGACTTTCTTGTATACCCCAAACACCACAGCGTAAACACAAGGATG  1123

seq1  CCGTCTACATCTGTGTACGAGTCGGCACTGTTTCTAATCTGGGGGTGGGG  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTACATCTGTGTACGAGTCGGCACTGTTTCTAATCTGGGGGTGGGG  1173

seq1  CCCTTACTGTATCTTAGGTGCTTACATAGTCTCAGATGTGGTACCCTCCA  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACTGTATCTTAGGTGCTTACATAGTCTCAGATGTGGTACCCTCCA  1223

seq1  GAATTC  1250
      ||||||
seq2  GAATTC  1229

seq1: chr8_120120054_120121089
seq2: B6Ng01-096H13.g_68_1100

seq1  GAATTCTCTTCATTTCGGTCCCCTAAGGACGGGTAACAAGGCTGTGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCATTTCGGTCCCCTAAGGACGGGTAACAAGGCTGTGGCTG  50

seq1  ATTGCTGTAGCTGCTAGCATCCTTGGTTTGTTAATCCCCTGTGGTCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTAGCTGCTAGCATCCTTGGTTTGTTAATCCCCTGTGGTCCTCT  100

seq1  CCCTTAAGGGCCAGGGGCAAGGTGAAACATTGTCGCATCAACCGGGACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAAGGGCCAGGGGCAAGGTGAAACATTGTCGCATCAACCGGGACGG  150

seq1  ACGCCACTTCGTGCTGGGCACCTCTGCCTACTTTGAGAGCCTGGTGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCACTTCGTGCTGGGCACCTCTGCCTACTTTGAGAGCCTGGTGGAGC  200

seq1  TTGTCAGCTACTACGAGAAGCACGCGCTCTATCGCAAGATGAGGCTTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGCTACTACGAGAAGCACGCGCTCTATCGCAAGATGAGGCTTCGA  250

seq1  TACCCCGTGACCCCGGAGCTCCTGGAGCGATATAATATGGTAGGTTGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCGTGACCCCGGAGCTCCTGGAGCGATATAATATGGTAGGTTGACG  300

seq1  CCCTTGGGCTTGTTAGTCATATCACGGTCTACATTTTAGAGATACAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGGCTTGTTAGTCATATCACGGTCTACATTTTAGAGATACAATGT  350

seq1  GCATACATTTACATATATTACTGTATGTCTGCGATAGGAGGTCCTGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATTTACATATATTACTGTATGTCTGCGATAGGAGGTCCTGAGGA  400

seq1  TGCAGACTTGGCCACCGTTTACAAAGACTCTGTCCCCATGCGACTGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTTGGCCACCGTTTACAAAGACTCTGTCCCCATGCGACTGATAG  450

seq1  TGGAGGTTGGGAGAGGCAGGCGATGCATTAGAAATAAACACAGACAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTTGGGAGAGGCAGGCGATGCATTAGAAATAAACACAGACAGAGT  500

seq1  CAGATGGTAATATATGTAAAGAGAGAGGGCTGGGACGGCGTAGCAGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTAATATATGTAAAGAGAGAGGGCTGGGACGGCGTAGCAGGGTA  550

seq1  TGAAGAGATGGGGCAGTGGCTTGCAGTTTTCAAAGGTTCTGGGGCGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGATGGGGCAGTGGCTTGCAGTTTTCAAAGGTTCTGGGGCGATCT  600

seq1  TCCTGAGGAGTGAGCCATGCAGATATCTGGAGGAGAAAGAACAGCAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGAGTGAGCCATGCAGATATCTGGAGGAGAAAGAACAGCAGAAG  650

seq1  CAAAAGCCTTGGGGTGGTCAACAGGCATGAAATGAGCCCAGCGAGAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCTTGGGGTGGTCAACAGGCATGAAATGAGCCCAGCGAGAGCAA  700

seq1  CGCTGAATGATGAATGAGGCTGGGGCTGAGATTCCAGAAGGTTCATGTAG  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CGCTGAATGATGAATGAGGCTGGGGCTGAGATTCCAGAAAGTTCATGTAG  750

seq1  GGCCTGGTGGGCCATGGGAAGGCACTGGCTCTTTATCTCG-TACACTGCA  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCCTGGTGGGCCATGGGAAGGCACTGGCTCTTTATCTCGTTACACTGCA  800

seq1  GGGTCCTGAGTGCACAGAAGGCC-GGATAT-GGTCATGATATCTCAC-TT  846
      ||||||||||||||||||||||| |||||| |||||||||||||||| ||
seq2  GGGTCCTGAGTGCACAGAAGGCCGGGATATGGGTCATGATATCTCACTTT  850

seq1  CCTGTCAGAAGGATCCTTGATTTCCTGAGAGGAGACAGATTCTGAGGGCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAGAAGGATCCTTGATTTCCTGAGAGGAGACAGATTCTGAGGGCT  900

seq1  GGTTAGTGTTGCTTGTCAACTTGACACAGCCTAGAATCAGCAGGAAGAAG  946
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  GGTTAGTGTTGCTTGTC-ACTTGACACAGCCTAGAATCAGCAGGAAG-AG  948

seq1  TCTTAGCGAGAAACTTCCTAGCTCAGGTTGGCCCATGGGCATGTCTATGG  996
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTTAGCGAGAAACTTCCTAGCTCA-GTTGGCCCATGGGCATGTCTATGG  997

seq1  GAAGCTCTCTGGATTGTTCATTGATGTAGGAAGGCCCAGC  1036
      | |||||||||||||| ||| ||||||||||| |||||||
seq2  G-AGCTCTCTGGATTG-TCA-TGATGTAGGAA-GCCCAGC  1033