BAC Information

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BAC

Clone NameB6Ng01-097E16
Chromosome8 (Build37)
Map Location 105,212,427 - 105,213,566
singlet/doubletsinglet
Overlap geneCdh11
Upstream genenone
Downstream geneEG667618, LOC100041368, 1600027J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097E16.bB6Ng01-097E16.g
ACCDH907706DH907707
length1,2101,129
definitionDH907706|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E16, 5' end.DH907707|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccatttttaatgggattaaaaatttt
tatggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttgggataggtacagatcctttcccaatctgttggtggtttt
tttgtcttattgacagtgtctttttccttgcagaaactctgcaattttat
gaggtcccatttatcgattctcgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctatacccatatcttcaaggcttttccctact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttaat
ccacttagatttaactttagtacaaggagatagaaatggatcaattcgca
atcttctacatgataacagccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaattg
accataggtgtgtgggttcatctctgggtcttcaattctgttccattggt
ctacttgtctgtcactataccagtaccatgcagtttttatcacagttgct
ctgtagtacagctttaggttgggcatggtgattccaccagaggttctttt
atccttaagaagagtttttgctatcctaggttttttgttattccagatga
atctgctgattgccctttctaattcattgaagaattgagttgaaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tactatattgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttcttttcttcagagacatgaagttcttatcata
cagatctttcacttccttagttagagtcatgccaaggtattttatattat
ttgtgactattgagaaggtattgtttccctcatttctttcttagtctgtt
tatctttggtattcagaaagccatgacttgttgagtaattttaattccag
ctacctcatggaagctgttatcaggcttaggagttctcctggtggaattt
ttaggtcacctaataatctattcataatcatctgcaaaaaggtaattgta
actcctctatcaatggattcccctggttatcccaagttgccaaggtgcct
ggccaaggac
gaattcttccgctagtagaatgaatgaatgaaaccatgatgaaatgaaat
catgtctgtttcaggttgggagattttgttacaccgtgaattttcagaaa
tccaaaattaaatgacaaggtagagatgctcaactattaaggtttttttt
tttttttgtcttgttttgttttgttttgtcttttgtttctttatttttat
ttcattagaaaaggggaaacagaaatataggagctgatggctaacattta
aaactagatcaagtgagcctcaaacccccctactctatggagagagaaag
aaatatcaggaagtgaaagacaatttccataggattgttgtctcctgcat
taaatatagttttccagtcacgtcatatctatggaaacaaaagcctcaga
ttcatgaagggaaatatatcttaagcaacctaagagtactctttaaagag
tcagaggtggaagagataagagatactgctctgtatattctccctagtac
ctgaggtttctcacagagctactgtcagtctgttttctgatagataaaca
gtgagagaaagtcttttttgaagttgggcttcatccttaaaaaaaggctt
gatgaagtcttgcaaactgatcactacaaccagggaagagagcgcctgaa
gtcaccagaacccagtaccagatcttctgtcagaaaattataatccatgg
tgttagccacgagatccacaagcatcactttagctcaaccagaggaatgg
ggaatgcagagtcaagctgcttccaattaccagaagcctggttctctcca
gagtgtggggtgggctatttcagaggtctttttcttaatgttctgtctgg
accaccccatatggctcatggcagtctaaataaaccgtgggaacatattt
aaatgcctcttttatatgcctgtgtatattacaaaggatgtcctcaccca
tttattttagaagctcataattatctccctgtgtttccataaatccacct
ttaagacactccttttttttttttttcagtaaataatgccatttatcaga
aggaatggatttttgagtcatgattaggaaagccaattgggatagaggca
actcaccagctccttgaacttgctaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105212427_105213566
seq2: B6Ng01-097E16.g_67_1195

seq1  GAATTCTTCCGCTAGTAGAATGAATGAATGAAACCATGATGAAATGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCGCTAGTAGAATGAATGAATGAAACCATGATGAAATGAAAT  50

seq1  CATGTCTGTTTCAGGTTGGGAGATTTTGTTACACCGTGAATTTTCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGTTTCAGGTTGGGAGATTTTGTTACACCGTGAATTTTCAGAAA  100

seq1  TCCAAAATTAAATGACAAGGTAGAGATGCTCAACTATTAAGGTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATTAAATGACAAGGTAGAGATGCTCAACTATTAAGGTTTTTTTT  150

seq1  TTTTTTTGTCTTGTTTTGTTTTGTTTTGTCTTTTGTTTCTTTATTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTCTTGTTTTGTTTTGTTTTGTCTTTTGTTTCTTTATTTTTAT  200

seq1  TTCATTAGAAAAGGGGAAACAGAAATATAGGAGCTGATGGCTAACATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGAAAAGGGGAAACAGAAATATAGGAGCTGATGGCTAACATTTA  250

seq1  AAACTAGATCAAGTGAGCCTCAAACCCCCCTACTCTATGGAGAGAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGATCAAGTGAGCCTCAAACCCCCCTACTCTATGGAGAGAGAAAG  300

seq1  AAATATCAGGAAGTGAAAGACAATTTCCATAGGATTGTTGTCTCCTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAGGAAGTGAAAGACAATTTCCATAGGATTGTTGTCTCCTGCAT  350

seq1  TAAATATAGTTTTCCAGTCACGTCATATCTATGGAAACAAAAGCCTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAGTTTTCCAGTCACGTCATATCTATGGAAACAAAAGCCTCAGA  400

seq1  TTCATGAAGGGAAATATATCTTAAGCAACCTAAGAGTACTCTTTAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAGGGAAATATATCTTAAGCAACCTAAGAGTACTCTTTAAAGAG  450

seq1  TCAGAGGTGGAAGAGATAAGAGATACTGCTCTGTATATTCTCCCTAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTGGAAGAGATAAGAGATACTGCTCTGTATATTCTCCCTAGTAC  500

seq1  CTGAGGTTTCTCACAGAGCTACTGTCAGTCTGTTTTCTGATAGATAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTTCTCACAGAGCTACTGTCAGTCTGTTTTCTGATAGATAAACA  550

seq1  GTGAGAGAAAGTCTTTTTTGAAGTTGGGCTTCATCCTTAAAAAAAGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAAAGTCTTTTTTGAAGTTGGGCTTCATCCTTAAAAAAAGGCTT  600

seq1  GATGAAGTCTTGCAAACTGATCACTACAACCAGGGAAGAGAGCGCCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTCTTGCAAACTGATCACTACAACCAGGGAAGAGAGCGCCTGAA  650

seq1  GTCACCAGAACCCAGTACCAGATCTTCTGTCAGAAAATTATAATCCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAGAACCCAGTACCAGATCTTCTGTCAGAAAATTATAATCCATGG  700

seq1  TGTTAGCCACGAGATCCACAAGCATCACTTTAGCTCAACCAGAGGAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCCACGAGATCCACAAGCATCACTTTAGCTCAACCAGAGGAATGG  750

seq1  GGAATGCAGAGTCAAGCTGCTTCCAATTACCAGAAGCCTGGTTCTCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCAGAGTCAAGCTGCTTCCAATTACCAGAAGCCTGGTTCTCTCCA  800

seq1  GAGTGT-GGGTGGGCTATTTCAGAGGTCTTTTTCTTAATGTTCTGTCTGG  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGGGTGGGCTATTTCAGAGGTCTTTTTCTTAATGTTCTGTCTGG  850

seq1  ACCACCCCATATGGCTCATGGCAGTCTAAATAAACCGT-GGAACATATTT  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACCACCCCATATGGCTCATGGCAGTCTAAATAAACCGTGGGAACATATTT  900

seq1  AAATGCCTCTTTTATATGCCTGTGTATATTACAAAGGATGT-CTCACCCA  947
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAATGCCTCTTTTATATGCCTGTGTATATTACAAAGGATGTCCTCACCCA  950

seq1  TTTATTTTTAGAAAGCTTCATAATTATCTCACTGTTGTTTCAATAAATCC  997
      |||| |||||| |||| ||||||||||||| ||| |||||| ||||||||
seq2  TTTA-TTTTAG-AAGC-TCATAATTATCTCCCTG-TGTTTCCATAAATCC  996

seq1  AACCTTTTAAAGACACT-CTTTTTTTTTTTCTTCAGTAAATTAATGCCAT  1046
       ||||||  |||||||| |||||||||||| ||||||||| |||||||||
seq2  -ACCTTT--AAGACACTCCTTTTTTTTTTTTTTCAGTAAA-TAATGCCAT  1042

seq1  TTATCAGAAAGAATGGGATATTTTTGAAGTCATGATGAAAGAAAAGCAAT  1096
      ||||||||| ||||||   ||||||| |||||||||  | ||||  ||||
seq2  TTATCAGAAGGAATGG---ATTTTTG-AGTCATGAT-TAGGAAAGCCAAT  1087

seq1  T-GGATAGAGCAAACTCACCCAGGCCTCCTGGTACTTGCTAAAGC  1140
      | ||||||||  |||||| ||||  ||||| | ||||||||||||
seq2  TGGGATAGAGGCAACTCA-CCAG--CTCCTTGAACTTGCTAAAGC  1129