BAC Information

Click to search

BAC

Clone NameB6Ng01-097M18
Chromosome8 (Build37)
Map Location 113,122,741 - 113,313,272
singlet/doubletdoublet
Overlap geneHydin, Vac14, BC060632, 2010004A03Rik
Upstream geneDhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, LOC672398
Downstream geneSf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097M18.bB6Ng01-097M18.g
ACCDH908070DH908071
length1,122394
definitionDH908070|Mus musculus domesticus DNA, BAC clone: B6Ng01-097M18, 5' end.DH908071|Mus musculus domesticus DNA, BAC clone: B6Ng01-097M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,122,741 - 113,123,847)(113,312,873 - 113,313,272)
sequence
gaattcactatgggaaacacttgaaacctctacacacataaacacacaca
cacacacacacactctgtagctccagacccaaagatgacatgggaggtga
ttttcctgcttcctccaggtggtgaatttcaactgccaagtgcgctccag
gcacacacagaccatcctgctctcaaaccgttccaaccagacctggaacc
tgcaccccatttttgagggtgagcactgggaggggcccgagttcatcacc
ttggaggcccatcagcaaaacaagccctatgagatcacctacaagccccg
aaccatgaatctggagaatcgcaagcaccaggtaaactgaggcctccctg
cctgctttcttagcataggggaagcaaggagctgggtggacagtggctaa
aagaccattttagagctcagagttaaacgaatacccaagtaaggagtggg
tatctagatcatgggatgataataatcatggatgatagggaaccataaca
gttggcaggcagtagcttgcccccttgcctacatttctcttagaatcctg
gggcacggctatgaaaggaagccctaggactaaaccccgagcagttccta
ttcagtttacgtgcatcagtggcataatggcaactgtaataaaaatcaga
agagagtcagggagatggctcagcccataaatgtgtccaccaccaagcct
taccaccaggggtcatttcctcaagaccaacatgttataaggagagaact
tatgactctcataagttgttctcttgatttccatatatgcatgttcatat
gtgtgcatataatgaatgaacgaacaaattgaattgaaaattttatttta
agagctggaaagatagctcaacagtttagagtactttgctattttttaca
gaagacctggagttcagctccctatacctatgctgaagaggctcatagcc
atctgtaaattccagtttcagcggggatccaatgcccctccctcctctgg
cctctatagggccctacaccacctattttatactctcacccacggacaca
atgattagaattgaatcttttccaaattctatttaaattcagaaaaggaa
agaagccaggtctttggtctga
ttgttccagcgggatctggagagtccaaagaggtaatcagttccggggct
tgtgggtatgacagagccctggagagcgccaggcccgaggatgggctagg
gcgtgtagtccctacagcatccacggaagaatgagacatgaacccaaagt
caacaagtgtaaagccaaacccgtggccggacccctgcgtgctgggggcg
gggaggacaccccgacaacaggaaacaaagcctctctgttcaccaagaat
tccatgtctccattgttcccctccaggaacattcctgaaatggtgagaaa
gtgaccagctcagtccaagtccccagcatatgatctgctgtgctgggtga
ctcaaaaagaaatggagaggaggtggtgggggtgcggggaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113122741_113123847
seq2: B6Ng01-097M18.b_43_1164

seq1  GAATTCACTATGGGAAACACTTGAAACCTCTACACACATAAACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGGGAAACACTTGAAACCTCTACACACATAAACACACACA  50

seq1  CACACACACACACTCTGTAGCTCCAGACCCAAAGATGACATGGGAGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACTCTGTAGCTCCAGACCCAAAGATGACATGGGAGGTGA  100

seq1  TTTTCCTGCTTCCTCCAGGTGGTGAATTTCAACTGCCAAGTGCGCTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGCTTCCTCCAGGTGGTGAATTTCAACTGCCAAGTGCGCTCCAG  150

seq1  GCACACACAGACCATCCTGCTCTCAAACCGTTCCAACCAGACCTGGAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACAGACCATCCTGCTCTCAAACCGTTCCAACCAGACCTGGAACC  200

seq1  TGCACCCCATTTTTGAGGGTGAGCACTGGGAGGGGCCCGAGTTCATCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCCATTTTTGAGGGTGAGCACTGGGAGGGGCCCGAGTTCATCACC  250

seq1  TTGGAGGCCCATCAGCAAAACAAGCCCTATGAGATCACCTACAAGCCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCCCATCAGCAAAACAAGCCCTATGAGATCACCTACAAGCCCCG  300

seq1  AACCATGAATCTGGAGAATCGCAAGCACCAGGTAAACTGAGGCCTCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAATCTGGAGAATCGCAAGCACCAGGTAAACTGAGGCCTCCCTG  350

seq1  CCTGCTTTCTTAGCATAGGGGAAGCAAGGAGCTGGGTGGACAGTGGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTCTTAGCATAGGGGAAGCAAGGAGCTGGGTGGACAGTGGCTAA  400

seq1  AAGACCATTTTAGAGCTCAGAGTTAAACGAATACCCAAGTAAGGAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATTTTAGAGCTCAGAGTTAAACGAATACCCAAGTAAGGAGTGGG  450

seq1  TATCTAGATCATGGGATGATAATAATCATGGATGATAGGGAACCATAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGATCATGGGATGATAATAATCATGGATGATAGGGAACCATAACA  500

seq1  GTTGGCAGGCAGTAGCTTGCCCCCTTGCCTACATTTCTCTTAGAATCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAGGCAGTAGCTTGCCCCCTTGCCTACATTTCTCTTAGAATCCTG  550

seq1  GGGCACGGCTATGAAAGGAAGCCCTAGGACTAAACCCCGAGCAGTTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACGGCTATGAAAGGAAGCCCTAGGACTAAACCCCGAGCAGTTCCTA  600

seq1  TTCAGTTTACGTGCATCAGTGGCATAATGGCAACTGTAATAAAAATCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTACGTGCATCAGTGGCATAATGGCAACTGTAATAAAAATCAGA  650

seq1  AGAGAGTCAGGGAGATGGCTCAGCCCATAAATGTGTCCACCACCAAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCAGGGAGATGGCTCAGCCCATAAATGTGTCCACCACCAAGCCT  700

seq1  TACCACCAAGGGTCA-TTCCTCAAGACCAACATGTTATAAGGAGAGAACT  749
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  TACCACCAGGGGTCATTTCCTCAAGACCAACATGTTATAAGGAGAGAACT  750

seq1  TATGACTCTCATAAGTTGTTCTC-TGATTTCCATATATGCAATGTCATAT  798
      ||||||||||||||||||||||| |||||||||||||||||   ||||||
seq2  TATGACTCTCATAAGTTGTTCTCTTGATTTCCATATATGCATGTTCATAT  800

seq1  GTGTGCATATAATGAATGAACGAACAAA-TGAA-TGAAAA-TGTAATTTA  845
      |||||||||||||||||||||||||||| |||| |||||| | || ||||
seq2  GTGTGCATATAATGAATGAACGAACAAATTGAATTGAAAATTTTATTTTA  850

seq1  AGAGCTGGAAAGATAGCTCAACAGTTAAGAGTAC-TTGCTA-TTCTTACA  893
      |||||||||||||||||||||||||| ||||||| |||||| || |||||
seq2  AGAGCTGGAAAGATAGCTCAACAGTTTAGAGTACTTTGCTATTTTTTACA  900

seq1  GAAGACCT-GAGTTCAGCTCCCAATACCTATGCTG-AGAGGCTCATAGCC  941
      |||||||| ||||||||||||| |||||||||||| ||||||||||||||
seq2  GAAGACCTGGAGTTCAGCTCCCTATACCTATGCTGAAGAGGCTCATAGCC  950

seq1  ATCTGT-AATTCCAGTTTCAGCGGGGATCCAATG-CCCTCCCT-CTCTGG  988
      |||||| ||||||||||||||||||||||||||| |||||||| ||||||
seq2  ATCTGTAAATTCCAGTTTCAGCGGGGATCCAATGCCCCTCCCTCCTCTGG  1000

seq1  CCTCTATA-GGCCCTACA-CACCTA-TGTATACATCCACACACAGACACA  1035
      |||||||| ||||||||| |||||| | |||||   ||| ||| ||||||
seq2  CCTCTATAGGGCCCTACACCACCTATTTTATACTCTCACCCACGGACACA  1050

seq1  A-AAATAAAAATGAATCTTTTCAAAATCTAATTTTAAAATTCAGAAAAGG  1084
      |  | || || ||||||||||| ||||   ||||  ||||||||||||||
seq2  ATGATTAGAATTGAATCTTTTCCAAATTCTATTT--AAATTCAGAAAAGG  1098

seq1  AAAGAAGCCA-GTCTTTGCTCTGA  1107
      |||||||||| ||||||| |||||
seq2  AAAGAAGCCAGGTCTTTGGTCTGA  1122

seq1: chr8_113312873_113313272
seq2: B6Ng01-097M18.g_69_468 (reverse)

seq1  TCCTTCCCCGCACCCCCACCACCTCCTCTCCATTTCTTTTTGAGTCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCCGCACCCCCACCACCTCCTCTCCATTTCTTTTTGAGTCACCC  50

seq1  AGCACAGCAGATCATATGCTGGGGACTTGGACTGAGCTGGTCACTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCAGATCATATGCTGGGGACTTGGACTGAGCTGGTCACTTTCTC  100

seq1  ACCATTTCAGGAATGTTCCTGGAGGGGAACAATGGAGACATGGAATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCAGGAATGTTCCTGGAGGGGAACAATGGAGACATGGAATTCTT  150

seq1  GGTGAACAGAGAGGCTTTGTTTCCTGTTGTCGGGGTGTCCTCCCCGCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACAGAGAGGCTTTGTTTCCTGTTGTCGGGGTGTCCTCCCCGCCCC  200

seq1  CAGCACGCAGGGGTCCGGCCACGGGTTTGGCTTTACACTTGTTGACTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACGCAGGGGTCCGGCCACGGGTTTGGCTTTACACTTGTTGACTTTG  250

seq1  GGTTCATGTCTCATTCTTCCGTGGATGCTGTAGGGACTACACGCCCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGTCTCATTCTTCCGTGGATGCTGTAGGGACTACACGCCCTAGC  300

seq1  CCATCCTCGGGCCTGGCGCTCTCCAGGGCTCTGTCATACCCACAAGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCGGGCCTGGCGCTCTCCAGGGCTCTGTCATACCCACAAGCCCC  350

seq1  GGAACTGATTACCTCTTTGGACTCTCCAGATCCCGCTGGAACAAGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGATTACCTCTTTGGACTCTCCAGATCCCGCTGGAACAAGAATTC  400