BAC Information

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BAC

Clone NameB6Ng01-097N10
Chromosome8 (Build37)
Map Location 55,234,891 - 55,235,907
singlet/doubletsinglet
Overlap geneVegfc
Upstream geneAga, Neil3, LOC100040107
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097N10.bB6Ng01-097N10.g
ACCDH908100DH908101
length1,1981,169
definitionDH908100|Mus musculus domesticus DNA, BAC clone: B6Ng01-097N10, 5' end.DH908101|Mus musculus domesticus DNA, BAC clone: B6Ng01-097N10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcatctgcttcagagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatatttcctctttgttcctactctctctccc
cgctttacttctgatagcttgtcctgaatttcctctagaattttcagccc
tatcttaatcacttgataacatgtgaaaaggaacaaaagggctcctaaca
ccagaaaaaattcaaggccaaacatattccactttacttctgatagactg
tcttgaatttccttagaaagttcaagatcagacttacctcgtaaagctgt
actcactggtactctcgttccccagctgaaaagttctgaattcatacagt
tgaatccttcttaacagtctgctttacgggaacctttattaccgcgaccc
gcagttctggttctggaatgagggatcttccttgcgccagtcccgagttt
tttctcgtcccggaattcggcaccaattgttattagacgcgttctcacgc
ccggccaggaagaacaccacagaccagaatcttctgcggcaaaactttat
tgcttacatcttcaggagcaagagtgtaagaagcaagagagagagaaaac
gaaaacccgtcccttttttaggagagttatatttcgcctaggacgtgtca
ctccctgattggctgcagcccatcggccgagttgacgtcacggggaaggc
agagcacatggagtggagaaccaccctcggcatatgcgcagtttatttgt
ttaccacttagaacacagctgtcagcgccatcttgtaacggcgaatgtgg
ggcgcggctccaacacttaagaagtgcctttacgtatgcaatgtgagcat
ttaaataataatgcacatgtatgatgagttaaggggagatttcaagagta
cggattataaaacttgagaatgagaaaggttttgaaatgtacttgctaac
caggatgaatctctaacatgtctatgtgtgactgttgtccccaaggttct
tgattaattgtctttttacaaaatgtcacataacaataaaggccctgg
gaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagt
ggatgctggcaaggatgtggagaaagaggaacactcctccatttttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggtttctca
gaaaattggacatagtactaccggaggatccagcaatacctttcctgggc
atatatccagaagatgccccaactggtaagaaggacacgtgctccactat
gttcataacagcattatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactacctagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacagattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacattttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagatacagagacaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcatccaaacgttgacaccattgcatacactagcaagattttatcgaaag
gacccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccat
gaggagctagagaagtaccaaggagctaaagggatctgcaccctataggt
gtacaacatatgaactaaccagtacccggagctccttgactctagctgca
tatgtatcaaaagaatgctagtcgcatcactgaagagaagtccaatggac
atgcaactttaatgccccagtacaggaatgccaggtcaaaagggtgaaga
tgattgatatgtgatgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55234891_55235907
seq2: B6Ng01-097N10.b_515_1246

seq1  GTTCCCCAGCTGAAAAGTTCTGAATTCATACAGTTGAATCCTTCTTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCAGCTGAAAAGTTCTGAATTCATACAGTTGAATCCTTCTTAACA  50

seq1  GTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGG  100

seq1  AATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAAT  150

seq1  TCGGCACCAATTGTTATTAGACGCGTTCTCACGCCCGGCCAGGAAGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCACCAATTGTTATTAGACGCGTTCTCACGCCCGGCCAGGAAGAACA  200

seq1  CCACAGACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGG  250

seq1  AGCAAGAGTGTAAGAAGCAAGAGAGAGAGAAAACGAAAACCCGTCCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGTGTAAGAAGCAAGAGAGAGAGAAAACGAAAACCCGTCCCTTT  300

seq1  TTTAGGAGAGTTATATTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAGAGTTATATTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGC  350

seq1  AGCCCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGG  400

seq1  AGAACCACCCTCGGCATATGCGCAGTTTATTTGTTTACCACTTAGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACCCTCGGCATATGCGCAGTTTATTTGTTTACCACTTAGAACAC  450

seq1  AGCTGTCAGCGCCATCTTGTAACGGCGAATGT-GGGCGCGGCTCCCAACA  499
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  AGCTGTCAGCGCCATCTTGTAACGGCGAATGTGGGGCGCGGCT-CCAACA  499

seq1  CTTAAGAAGTGCCTTTACGTATGCAATGTGAGCATTTAAATAAT-ATGCA  548
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTAAGAAGTGCCTTTACGTATGCAATGTGAGCATTTAAATAATAATGCA  549

seq1  CATGTATGATGAGGTAAAGTGAGATTTCACAGAGTACAGATTATAAAAAC  598
      ||||||||||||| ||| | ||||||||| ||||||| |||||| |||||
seq2  CATGTATGATGAGTTAAGGGGAGATTTCA-AGAGTACGGATTAT-AAAAC  597

seq1  TTGAGAATGAAGAAGGTTTTGAAATGTACCTTGCTATACAGGAATGAATC  648
      ||||||||||  |||||||||||||||| |||||||  |||| |||||||
seq2  TTGAGAATGAGAAAGGTTTTGAAATGTA-CTTGCTAACCAGG-ATGAATC  645

seq1  TCTTAACATGGTTCCTAATGT-TGACTGTTGTCACCAAGTTTCTTGATTA  697
      || |||||||  |    |||| ||||||||||| ||||| ||||||||  
seq2  TC-TAACATGTCT----ATGTGTGACTGTTGTCCCCAAGGTTCTTGAT--  688

seq1  TAATTGTCTTTATAACATATGTCACATAACATATATAAAGCCCTGGGCAT  747
      ||||||||||| ||  | ||||||||||||| ||| || |||||||    
seq2  TAATTGTCTTTTTACAAAATGTCACATAACA-ATA-AAGGCCCTGG----  732

seq1  GTCATGGTAGTTCATACAATAATTTGCTTAATTTTTTGTATATTTTTTTG  797
                                                        
seq2  --------------------------------------------------  732

seq1  TTTTTTGTATTTTTTTAATTTAACTGATGTTTTTAATAGAAGAAAAAGGC  847
                                                        
seq2  --------------------------------------------------  732

seq1  AGAAATTTTCAATTGTTTTGGATATTAGTTCTATTGTTAAATTAGGAAAA  897
                                                        
seq2  --------------------------------------------------  732

seq1  TTATATGTACAATCCAAATAGTACGCTTAATATCAAGCTCCATTATAAAG  947
                                                        
seq2  --------------------------------------------------  732

seq1  CTGTTGTAAGAGGTGGTGACGTAGCTCTGCCATAGAGTACTTCTTTAACC  997
                                                        
seq2  --------------------------------------------------  732

seq1  TCTTGTGTGCAAGGCCCTGG  1017
                          
seq2  --------------------  732