BAC Information

Click to search

BAC

Clone NameB6Ng01-098G08
Chromosome8 (Build37)
Map Location 78,797,851 - 78,913,560
singlet/doubletdoublet
Overlap geneEG631594
Upstream geneLOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036, LOC100039185
Downstream geneLOC666226, LOC100039211, LOC384847, Nr3c2, Arhgap10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098G08.bB6Ng01-098G08.g
ACCDH908502DH908503
length1,1401,080
definitionDH908502|Mus musculus domesticus DNA, BAC clone: B6Ng01-098G08, 5' end.DH908503|Mus musculus domesticus DNA, BAC clone: B6Ng01-098G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,797,851 - 78,798,941)(78,912,474 - 78,913,560)
sequence
gaattctgtagacttcttgtatgttcatgggcatctctttctttagatta
gtgaagttttcttctataattttgttgaagatatttactggccctttaag
ttggaaatcttccttcttgtctatttctattatccttaggtttggtctta
ggttgtgtcctgcatttcctggatgttttgggttaggatctgtttgcatt
ttgcattttctttgattgttgtgtcaatattttctatggtgtcttctgca
cctgaggttctcccttctatctgatgcattttgttgattatacttgcatc
aatggctcctgacttctttcctaggatttctattttcagagtggtctccc
tttgtgatttctttattgtttctactttagatcctagatggttttgtaca
attctttcacctgtttggatacgttctcctgtatttctttaagggagtta
ttcatttccttcttgtactccaaaaatatggaacacttcacaaatttgtg
tgtcatcctcgcacagggaccatgctaatcttctctgtatcattccaatt
ttagtatatgtgctgccaaaatgagtacacttttattctctctttgctgt
tatcagaaacaggaacatgggaagaatttttttcacttgcctagttatat
tttaatccatgcactattctatatgttgggatgttctgcatctcacattc
tgaaagcaatgaaaattatttgtttggaataccttttagacaaacagatg
gagtaatttggagaataaatacaaatatttgaagaatgcctaagcagagg
cagcatatcttctataggacatcaattatgaattgatggatgtgtttata
gacagaaattatgaactattgtcaataacatcaatgtattttgtctttta
aaataagcaaatattttaatataggtatttgggattttagttattgaatt
tcatacatcataaatatgcatatggaatgacacatgacctgtaaaatgag
cagctagattttctccaccctgtagaatgccctgtgtttacagatacatg
ctgctatgttctcacaatgtggagctgctgctacctagctactgacttag
aatagatccacctctatgcgaaccattcagtgtcgaaata
gaattcccctacataggggctgaattaatctgcattcacagagcagtgga
tcagagttctgcttcccagtggcctttccagcagattatgttatggtact
tttaatagctatggcatgttggtatggtttggatgtgcagttcccttatt
aggaatgtaattaaacatatttgcatgttcttaagacatctatttattaa
cattggatcttttattcatttttatgttggcctttgtcttattcctcctt
actattagagagaattttttggtatcttttggtttaatgtgtgtgtgcac
actcacatacatcactgtgcctgtaggaatgttgggagaagccagacaaa
gctgactggcagcaccatgtatccttgagacagagcttcactgaacctga
agctcacgtttaactaggctgacagactagcagcttcccaggtgtgcatt
tctctgtctttccttgtggtgttatagtcatgggcagccatgcctatttc
tttctgtttccatgtacttgtcttactattttccaacctttgggccagca
tgatttaaactaggaactctatataagtaaatgtttatttttagtctact
aagtattgtttctccatgactttgaagcttgaatttctactacttggtct
ttatgaaatggtctttgtaactctttcgagtcagttcattgggcatctcc
gaatgctggtcatctgaagcatccccagatgcagcaacctgcccttttct
atgtggttgctttctcagtccctcttgtgccaagttttaagtgttatatg
ttggataatgactatgactcatgattagtgaagtgactctaaagggcata
tggtatttagtgaagtgtggaagtactgggaggtttcagaaatgagctgt
gaaagtctagaggtttctaataaggcctcttctgatggaccatgggaggg
tgagagtgacagaaagtgagtggaaatgagaggtagaagttgcaagtgga
gcaacttctgttcacttagtgttagatgacaggttttaaggcaaatttgg
tgtttccatgcattttagtctcagcccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_78797851_78798941
seq2: B6Ng01-098G08.b_128_1188

seq1  GATATTTACTGGCCCTTTAAGTTGGAAATCTTCCTTCTTGTCTATTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTACTGGCCCTTTAAGTTGGAAATCTTCCTTCTTGTCTATTTCTA  50

seq1  TTATCCTTAGGTTTGGTCTTAGGTTGTGTCCTGCATTTCCTGGATGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTAGGTTTGGTCTTAGGTTGTGTCCTGCATTTCCTGGATGTTTT  100

seq1  GGGTTAGGATCTGTTTGCATTTTGCATTTTCTTTGATTGTTGTGTCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGGATCTGTTTGCATTTTGCATTTTCTTTGATTGTTGTGTCAATA  150

seq1  TTTTCTATGGTGTCTTCTGCACCTGAGGTTCTCCCTTCTATCTGATGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATGGTGTCTTCTGCACCTGAGGTTCTCCCTTCTATCTGATGCAT  200

seq1  TTTGTTGATTATACTTGCATCAATGGCTCCTGACTTCTTTCCTAGGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGATTATACTTGCATCAATGGCTCCTGACTTCTTTCCTAGGATTT  250

seq1  CTATTTTCAGAGTGGTCTCCCTTTGTGATTTCTTTATTGTTTCTACTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCAGAGTGGTCTCCCTTTGTGATTTCTTTATTGTTTCTACTTTA  300

seq1  GATCCTAGATGGTTTTGTACAATTCTTTCACCTGTTTGGATACGTTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAGATGGTTTTGTACAATTCTTTCACCTGTTTGGATACGTTCTCC  350

seq1  TGTATTTCTTTAAGGGAGTTATTCATTTCCTTCTTGTACTCCAAAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCTTTAAGGGAGTTATTCATTTCCTTCTTGTACTCCAAAAATAT  400

seq1  GGAACACTTCACAAATTTGTGTGTCATCCTCGCACAGGGACCATGCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACTTCACAAATTTGTGTGTCATCCTCGCACAGGGACCATGCTAAT  450

seq1  CTTCTCTGTATCATTCCAATTTTAGTATATGTGCTGCCAAAATGAGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTATCATTCCAATTTTAGTATATGTGCTGCCAAAATGAGTACA  500

seq1  CTTTTATTCTCTCTTTGCTGTTATCAGAAACAGGAACATGGGAAGAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTCTCTCTTTGCTGTTATCAGAAACAGGAACATGGGAAGAATTT  550

seq1  TTTTCACTTGCCTAGTTATATTTTAATCCATGCACTATTCTATATGTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTGCCTAGTTATATTTTAATCCATGCACTATTCTATATGTTGG  600

seq1  GATGTTCTGCATCTCACATTCTGAAAGCAATGAAAATTATTTGTTTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTGCATCTCACATTCTGAAAGCAATGAAAATTATTTGTTTGGAA  650

seq1  TACCTTTTAGACAAACAGATGGAGTAATTTGGAGAATAAATACAAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTAGACAAACAGATGGAGTAATTTGGAGAATAAATACAAATATT  700

seq1  TGAAGAATGCCTAAGCAGAGGCAGCATATCTTCTATAGGACATCAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATGCCTAAGCAGAGGCAGCATATCTTCTATAGGACATCAATTAT  750

seq1  GAATTGATGGATGTGTTTAATAGACAGAAATTATGAACTATTGTCAATAA  800
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAATTGATGGATGTGTTT-ATAGACAGAAATTATGAACTATTGTCAATAA  799

seq1  CATCAAATGTATTTTGTCTTTTAAAATAAGCAAAATATTTTAATAATAGG  850
      |||| |||||||||||||||||||||||||| |||||||||||| |||||
seq2  CATC-AATGTATTTTGTCTTTTAAAATAAGC-AAATATTTTAAT-ATAGG  846

seq1  TATTTTGGATTTTAGTTATTGAATTTTCAATACATCAATAAAATATGCAT  900
      ||||| ||||||||||||||||||||   ||||||||   ||||||||||
seq2  TATTTGGGATTTTAGTTATTGAATTT--CATACATCA--TAAATATGCAT  892

seq1  ATGGAAATGACACATGACCTGTAAAAATGAAGCAGCTAGATTATCTCCAA  950
      |||| ||||||||||||||||| |||||| |||||||||||| |||||| 
seq2  ATGG-AATGACACATGACCTGT-AAAATG-AGCAGCTAGATTTTCTCCA-  938

seq1  CCCCTGTAGAAATGCCCTTGTGTTTACCAGATACCACTGCTGCCTATGTT  1000
       |||||||| ||||||| |||||||| |||||||   ||||| |||||||
seq2  -CCCTGTAG-AATGCCC-TGTGTTTA-CAGATAC--ATGCTG-CTATGTT  981

seq1  CTCACAAATGTGGAAGCTGCTGCCTACCCATAGCCTACTGGACCTATAGA  1050
      ||||| ||||||| |||||||| |||||  ||| ||||| |||   ||||
seq2  CTCAC-AATGTGG-AGCTGCTG-CTACC--TAG-CTACT-GAC--TTAGA  1022

seq1  TTAGATCACACTCTATGCAGACACATTCAGTGTCGATAATA  1091
       ||||||   |||||||| ||  ||||||||||||| ||||
seq2  ATAGATCCACCTCTATGC-GAACCATTCAGTGTCGA-AATA  1061

seq1: chr8_78912474_78913560
seq2: B6Ng01-098G08.g_67_1146 (reverse)

seq1  GGGGGGCTGAGACTGAAGATGGCATGGAAAACACCAAATTTGCCTTAAAA  50
      |||||||||||||| || || |||||| ||||||||||||||||||||||
seq2  GGGGGGCTGAGACT-AAAAT-GCATGG-AAACACCAAATTTGCCTTAAAA  47

seq1  CACTGTCATCTGAACACTAAGTGGAACCAGAAGGTGCT-CACTTGCAACT  99
      | ||||||||| |||||||||||  | |||||| |||| |||||||||||
seq2  C-CTGTCATCT-AACACTAAGTG--AACAGAAGTTGCTCCACTTGCAACT  93

seq1  GTCTACCTCCTCATTTCCACCTCACTTTCTGTCACTCTCACCCTCCCATG  149
       ||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  -TCTACCT-CTCATTTCCA-CTCACTTTCTGTCACTCTCACCCTCCCATG  140

seq1  GTCCATCAG-AGAGGCCTTATTAGTAACCTCTAGACTTTCACAGCTCATT  198
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  GTCCATCAGAAGAGGCCTTATTAGAAACCTCTAGACTTTCACAGCTCATT  190

seq1  TCTGAAACCTCCCAGTACTTCCACACTTCACTAAATACCATATGCCC-TT  247
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTGAAACCTCCCAGTACTTCCACACTTCACTAAATACCATATGCCCTTT  240

seq1  AGAGTCACTTCACTAATCATGAGTCATAGTCATTATCCAACATATAACAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACTTCACTAATCATGAGTCATAGTCATTATCCAACATATAACAC  290

seq1  TTAAAACTTGGCACAAGAGGGACTGAGAAAGCAACCACATAGAAAAGGGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTTGGCACAAGAGGGACTGAGAAAGCAACCACATAGAAAAGGGC  340

seq1  AGGTTGCTGCATCTGGGGATGCTTCAGATGACCAGCATTCGGAGATGCCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCTGCATCTGGGGATGCTTCAGATGACCAGCATTCGGAGATGCCC  390

seq1  AATGAACTGACTCGAAAGAGTTACAAAGACCATTTCATAAAGACCAAGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTGACTCGAAAGAGTTACAAAGACCATTTCATAAAGACCAAGTA  440

seq1  GTAGAAATTCAAGCTTCAAAGTCATGGAGAAACAATACTTAGTAGACTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATTCAAGCTTCAAAGTCATGGAGAAACAATACTTAGTAGACTAA  490

seq1  AAATAAACATTTACTTATATAGAGTTCCTAGTTTAAATCATGCTGGCCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACATTTACTTATATAGAGTTCCTAGTTTAAATCATGCTGGCCCA  540

seq1  AAGGTTGGAAAATAGTAAGACAAGTACATGGAAACAGAAAGAAATAGGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGGAAAATAGTAAGACAAGTACATGGAAACAGAAAGAAATAGGCA  590

seq1  TGGCTGCCCATGACTATAACACCACAAGGAAAGACAGAGAAATGCACACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCCATGACTATAACACCACAAGGAAAGACAGAGAAATGCACACC  640

seq1  TGGGAAGCTGCTAGTCTGTCAGCCTAGTTAAACGTGAGCTTCAGGTTCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCTGCTAGTCTGTCAGCCTAGTTAAACGTGAGCTTCAGGTTCAG  690

seq1  TGAAGCTCTGTCTCAAGGATACATGGTGCTGCCAGTCAGCTTTGTCTGGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTCTGTCTCAAGGATACATGGTGCTGCCAGTCAGCTTTGTCTGGC  740

seq1  TTCTCCCAACATTCCTACAGGCACAGTGATGTATGTGAGTGTGCACACAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCAACATTCCTACAGGCACAGTGATGTATGTGAGTGTGCACACAC  790

seq1  ACATTAAACCAAAAGATACCAAAAAATTCTCTCTAATAGTAAGGAGGAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAACCAAAAGATACCAAAAAATTCTCTCTAATAGTAAGGAGGAAT  840

seq1  AAGACAAAGGCCAACATAAAAATGAATAAAAGATCCAATGTTAATAAATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAGGCCAACATAAAAATGAATAAAAGATCCAATGTTAATAAATA  890

seq1  GATGTCTTAAGAACATGCAAATATGTTTAATTACATTCCTAATAAGGGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTAAGAACATGCAAATATGTTTAATTACATTCCTAATAAGGGAA  940

seq1  CTGCACATCCAAACCATACCAACATGCCATAGCTATTAAAAGTACCATAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACATCCAAACCATACCAACATGCCATAGCTATTAAAAGTACCATAA  990

seq1  CATAATCTGCTGGAAAGGCCACTGGGAAGCAGAACTCTGATCCACTGCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCTGCTGGAAAGGCCACTGGGAAGCAGAACTCTGATCCACTGCTC  1040

seq1  TGTGAATGCAGATTAATTCAGCCCCTATGTAGGGGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGCAGATTAATTCAGCCCCTATGTAGGGGAATTC  1080