BAC Information

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BAC

Clone NameB6Ng01-098G12
Chromosome8 (Build37)
Map Location 111,872,473 - 112,028,304
singlet/doubletdoublet
Overlap geneLOC100042829, Pmfbp1
Upstream geneAtbf1, 4922502B01Rik, Gm1943
Downstream geneDhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098G12.bB6Ng01-098G12.g
ACCDH908510DH908511
length1,207537
definitionDH908510|Mus musculus domesticus DNA, BAC clone: B6Ng01-098G12, 5' end.DH908511|Mus musculus domesticus DNA, BAC clone: B6Ng01-098G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,027,095 - 112,028,304)(111,872,473 - 111,873,015)
sequence
gaattcaggtccttaggcttgtactttactcatggaccctctcccctagt
tccagtctcttaaaagttttttcctagtgaagatatggatattatattct
tcctagacttttaatttgggatctggaaaaaaaaaccaaatgagtctgaa
gtgcttatagaaattatattagctctttaagtgactgtccagagtggata
tgactcttgaggccatctggtctaccagacttctcagctagatttacacc
cttgtatcggccacatgaaaagctggggatgtgtggctgcccagaggagc
tgtttccatatttagtcaacctttcagccccactgaggaccaagagatta
gagctgttgctccctccttgcttatgaggccacttgatcacagaaggaaa
ttaattggcctgccatgattctctttttgaaaagtcatgttggttaccac
ccaatactttgtgcttttgaagttgctgctaattgattgatgttaagttc
tatattttccctgatactgaagtgaagctgacaggtctataattaccagg
attgtcctttcttcctttttaaaaagatgagcacttcatttacccctttc
cctccccagtctacagggactttctttatcctcttgagttctcaaaaatt
atcactagcagctatgtaataacacctgccaattccttaagcgctcttag
aagagtatcatcaggccctgctgatttgcctagagctggcttttcaaaat
accttttaaccctttactctctctttcagcttgcatgctctgctgtcaga
ggttggcattgttcccacaactgtgtccctgttgctcttctttatccgtt
taagagcttagagtttctctgtcttttccccagtccttgctatggactcc
cttcccagactttgaagtgctgagcgagctactactccctggggatacta
ggttagccttccctatccattgtgaagcttgtctgatgcttcctctgtca
tcttgtaaactatgtgtactttccttgttgattgcagatgagctggtgtg
gctcagtgaccagcattttattcaaatgaatgtttgtggttagacattct
tcttccaggactcgtcttacacggaatcatacttttttttttttttaatc
cattggatgatttttcctctcagagaagattcaaacatagaacgaaattt
ctcatgg
atgccagtggatttaaaaacatttctactgtacttttttcgcagaaacat
ataaactaagacaacaattcagagataggatgtaggcccgtggtagagca
cttgtctagagtatataagcccagcgaccaaattcctaatcacaaaggac
tccacagcaggccatgtctgcagttactggaatggcgctgtttaagtctt
tctgtctgtcgccttgatggtgttttcagaatgcgggcagagcagtatat
caaatgttgctgaacacactgatgccacaccctctgacataaacttgatt
ggagctcagcgtagtttatgtattttatttccttctgcctgacctctttg
tctctctccgctgagccagaacgaggttggagagaagatggatataacct
gtggtgtgcctcagactagtgtgaggatgtttgttgtattgtttcctaca
atttaatatgagatgtactttcagaaaacatattccaaagctataaataa
atggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112027095_112028304
seq2: B6Ng01-098G12.b_47_1253 (reverse)

seq1  CCATGGGAAA-TTCGTCCTATGTTTGGAATTTGTCTGTGGAGA-GAAAAA  48
      ||||| |||| ||||| ||||||||| |  || |||   |||| ||||||
seq2  CCATGAGAAATTTCGTTCTATGTTTGAATCTTCTCT---GAGAGGAAAAA  47

seq1  TCATTCCAAATGGATTTAAAAAAAAAAAAAAGAATGGATCCCGTGTAAGC  98
      ||||  | |||||| ||||||||||||||||| || ||| ||||||||| 
seq2  TCAT--CCAATGGA-TTAAAAAAAAAAAAAAGTAT-GATTCCGTGTAAGA  93

seq1  AGAGGTCTTGTGAGAAGAATGTCTAAACCACAAACATTCATTTGAATAAA  148
       || ||| ||  |||||||||||| |||||||||||||||||||||||||
seq2  CGA-GTCCTGGAAGAAGAATGTCT-AACCACAAACATTCATTTGAATAAA  141

seq1  ATGCTTGTCACTGAG-CACA-CAGCTCTTCTGCATTCAACAAGGAAAGTA  196
      ||||| ||||||||| |||| |||||| |||||| |||||||||||||||
seq2  ATGCTGGTCACTGAGCCACACCAGCTCATCTGCAATCAACAAGGAAAGTA  191

seq1  CACATAGTTTAC-AGATGACAGAGGAAGCATCAGACAAGCTTCACAATGG  245
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACATAGTTTACAAGATGACAGAGGAAGCATCAGACAAGCTTCACAATGG  241

seq1  ATAGGGAAGGCTAACCTAGTATTCCCAGGGAGTAGTAGCTCGCTCAGCAC  295
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAGGGAAGGCTAACCTAGTATCCCCAGGGAGTAGTAGCTCGCTCAGCAC  291

seq1  CTCAAAGTCTGGGAAGGGAGTCCATAGCAAGGACTGGGGAAAAGACAGAG  345
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTCTGGGAAGGGAGTCCATAGCAAGGACTGGGGAAAAGACAGAG  341

seq1  AAACTCTAAGCTCTTAAACGGATAAAGAAGAGCAACAGGGACACAGTTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTAAGCTCTTAAACGGATAAAGAAGAGCAACAGGGACACAGTTGT  391

seq1  GGGAACAATGCCAACCTCTGACAGCAGAGCATGCAAGCTG-AAGAGAGAG  444
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGAACAATGCCAACCTCTGACAGCAGAGCATGCAAGCTGAAAGAGAGAG  441

seq1  TAAAGGGTTAAAAGGTATTTTGAAAAGCCAGCTCTAGGCAAATCAGCAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGTTAAAAGGTATTTTGAAAAGCCAGCTCTAGGCAAATCAGCAGG  491

seq1  GCCTGATGATACTCTTCTAAGAGCGCTTAAGGAATTGGCAGGTGTTATTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATGATACTCTTCTAAGAGCGCTTAAGGAATTGGCAGGTGTTATTA  541

seq1  CATAGCTGCTAGTGATAATTTTTGAGAACTCAAGAGGATAAAGAAAGTCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTGCTAGTGATAATTTTTGAGAACTCAAGAGGATAAAGAAAGTCC  591

seq1  CTGTAGACTGGGGAGGGAAAGGGGTAAATGAAGTGCTCATCTTTTTAAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACTGGGGAGGGAAAGGGGTAAATGAAGTGCTCATCTTTTTAAAA  641

seq1  AGGAAGAAAGGACAATCCTGGTAATTATAGACCTGTCAGCTTCACTTCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAGGACAATCCTGGTAATTATAGACCTGTCAGCTTCACTTCAG  691

seq1  TATCAGGGAAAATATAGAACTTAACATCAATCAATTAGCAGCAACTTCAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGGAAAATATAGAACTTAACATCAATCAATTAGCAGCAACTTCAA  741

seq1  AAGCACAAAGTATTGGGTGGTAACCAACATGACTTTTCAAAAAGAGAATC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAAGTATTGGGTGGTAACCAACATGACTTTTCAAAAAGAGAATC  791

seq1  ATGGCAGGCCAATTAATTTCCTTCTGTGATCAAGTGGCCTCATAAGCAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGCCAATTAATTTCCTTCTGTGATCAAGTGGCCTCATAAGCAAG  841

seq1  GAGGGAGCAACAGCTCTAATCTCTTGGTCCTCAGTGGGGCTGAAAGGTTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGCAACAGCTCTAATCTCTTGGTCCTCAGTGGGGCTGAAAGGTTG  891

seq1  ACTAAATATGGAAACAGCTCCTCTGGGCAGCCACACATCCCCAGCTTTTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATATGGAAACAGCTCCTCTGGGCAGCCACACATCCCCAGCTTTTC  941

seq1  ATGTGGCCGATACAAGGGTGTAAATCTAGCTGAGAAGTCTGGTAGACCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCCGATACAAGGGTGTAAATCTAGCTGAGAAGTCTGGTAGACCAG  991

seq1  ATGGCCTCAAGAGTCATATCCACTCTGGACAGTCACTTAAAGAGCTAATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTCAAGAGTCATATCCACTCTGGACAGTCACTTAAAGAGCTAATA  1041

seq1  TAATTTCTATAAGCACTTCAGACTCATTTGGTTTTTTTTTCCAGATCCCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTATAAGCACTTCAGACTCATTTGGTTTTTTTTTCCAGATCCCA  1091

seq1  AATTAAAAGTCTAGGAAGAATATAATATCCATATCTTCACTAGGAAAAAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAGTCTAGGAAGAATATAATATCCATATCTTCACTAGGAAAAAA  1141

seq1  CTTTTAAGAGACTGGAACTAGGGGAGAGGGTCCATGAGTAAAGTACAAGC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGAGACTGGAACTAGGGGAGAGGGTCCATGAGTAAAGTACAAGC  1191

seq1  CTAAGGACCTGAATTC  1210
      ||||||||||||||||
seq2  CTAAGGACCTGAATTC  1207

seq1: chr8_111872473_111873015
seq2: B6Ng01-098G12.g_66_608

seq1  GAATTCATGCCAGTGGATTTAAAAACATTTCTACTGTACTTTTTTCGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCAGTGGATTTAAAAACATTTCTACTGTACTTTTTTCGCAG  50

seq1  AAACATATAAACTAAGACAACAATTCAGAGATAGGATGTAGGCCCGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATAAACTAAGACAACAATTCAGAGATAGGATGTAGGCCCGTGGT  100

seq1  AGAGCACTTGTCTAGAGTATATAAGCCCAGCGACCAAATTCCTAATCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTTGTCTAGAGTATATAAGCCCAGCGACCAAATTCCTAATCACA  150

seq1  AAGGACTCCACAGCAGGCCATGTCTGCAGTTACTGGAATGGCGCTGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTCCACAGCAGGCCATGTCTGCAGTTACTGGAATGGCGCTGTTTA  200

seq1  AGTCTTTCTGTCTGTCGCCTTGATGGTGTTTTCAGAATGCGGGCAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCTGTCTGTCGCCTTGATGGTGTTTTCAGAATGCGGGCAGAGCA  250

seq1  GTATATCAAATGTTGCTGAACACACTGATGCCACACCCTCTGACATAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCAAATGTTGCTGAACACACTGATGCCACACCCTCTGACATAAAC  300

seq1  TTGATTGGAGCTCAGCGTAGTTTATGTATTTTATTTCCTTCTGCCTGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGGAGCTCAGCGTAGTTTATGTATTTTATTTCCTTCTGCCTGACC  350

seq1  TCTTTGTCTCTCTCCGCTGAGCCAGAACGAGGTTGGAGAGAAGATGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCTCTCTCCGCTGAGCCAGAACGAGGTTGGAGAGAAGATGGATA  400

seq1  TAACCTGTGGTGTGCCTCAGACTAGTGTGAGGATGTTTGTTGTATTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGTGGTGTGCCTCAGACTAGTGTGAGGATGTTTGTTGTATTGTTT  450

seq1  CCTACAATTTAATATGAGATGTACTTTCAGAAAACATATTCCAAAGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAATTTAATATGAGATGTACTTTCAGAAAACATATTCCAAAGCTAT  500

seq1  AAATAAATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  543