BAC Information

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BAC

Clone NameB6Ng01-099E11
Chromosome8 (Build37)
Map Location 74,681,400 - 74,878,090
singlet/doubletdoublet
Overlap geneRab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1
Upstream geneLOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4
Downstream geneCalr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large, LOC100039001
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099E11.bB6Ng01-099E11.g
ACCDH909118DH909119
length7411,032
definitionDH909118|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E11, 5' end.DH909119|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,681,400 - 74,682,140)(74,877,055 - 74,878,090)
sequence
gaattcactttgtagaccaggctggtctcgaactcagatatccgcctgcc
tctgcctcccaagtgctgggattaaaggcgtgaaccaccacgcccggcta
catagatgaaatcttaagtcccccccccccctaagggcctccaaccacta
ggttccacccaaagaacactctccttaatggctggacctaacccccatgc
ctcaacagtgtaaaaaccccaagctctggacttgaaaacccaccaatccc
caccctagaaagttccaccatggaaagctctgccccacaaagccatttaa
atcctatcctctgttcagtcctttgctgcttctctccagagcaggggcaa
ctacccttctgggttctttcctcccaatttatctcttgtgtgaggtttat
tgtgcagagtcattttgcagtattccttggctcccaactgccaggatacc
tttctctccggagctggggaaatattccccagccaaagcagagctgtaac
acttccgctggggaagcctttcacctcagagctgtaacacacaaatccta
gctattactcagtggtggtctgaggctcagcatcaaagcacttgcttggc
atgcacaaggcctctttgttcttacaggtaccaatctgcaccccaggggc
acctgctgaggtttccaggcttatatgccagggacatgcagtaaggtagt
aaaagatagtttatttgatacaaaaagggtatttgggctgg
gaattcctccgcaaaaagtcattctcctcgagcagaaaagtcctccccca
cccacatgctatctatgcagaatggccaaggctttctcacagggtcagca
gggtacaggcacagggaatatttaggattgtaagcagcccaatcctgtga
actttcagcctttctgtgagatcccaggaagaggatggaacctgcgggtc
agggccctggtgctgctggctgtcctgtctatgcccaagccccttgttac
ttcgtattgtcaaatggcatcactgtctgagcctgtggttagcacctctg
ccctgaatataactactttaattccgttcccacgatggtggcaaagagat
aatgcgctgggtacactggagagtatagaaaggaatgtacttgttccatt
tcaggaaggttctggtgttcgctagcagccaggatggccggaaggcattg
aagcagcccccagcccccacacactcagggcactcactgctctgctgttg
ctatggcaccctggagggtctgtcccagggctcgggataaccagtggctg
ctgtagatctatgctggctgagggagggaggcacccatatactgtatggg
tttgccttcccaggcggtggaggaacccatgctaatccagctggtttcag
cagcctgaggccggctgttgttgagggaagatttggcagaacagtttgaa
aatagaaatagtgcctacctcagcacacccacccttttgcactcagcaag
gtggatccagtgggtgtcctgtggcctgatattcattaacgagtaaatgc
ctcaccagaggtgggtcacaatctggacagtggaggttctgggggacctg
caggatgtaagcccagaaagactgggtcttctaccgggcctctgtggtag
taggtgggtgggaacaactcccaggccctcacttggctgaaggtccactc
tttgatcacctaaaggactcagccaggtcttctagtatataaatgattga
cacatcacccttgtatgagctcagatagtagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_74681400_74682140
seq2: B6Ng01-099E11.b_48_788

seq1  GAATTCACTTTGTAGACCAGGCTGGTCTCGAACTCAGATATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGTCTCGAACTCAGATATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGAACCACCACGCCCGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGAACCACCACGCCCGGCTA  100

seq1  CATAGATGAAATCTTAAGTCCCCCCCCCCCCTAAGGGCCTCCAACCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGAAATCTTAAGTCCCCCCCCCCCCTAAGGGCCTCCAACCACTA  150

seq1  GGTTCCACCCAAAGAACACTCTCCTTAATGGCTGGACCTAACCCCCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCACCCAAAGAACACTCTCCTTAATGGCTGGACCTAACCCCCATGC  200

seq1  CTCAACAGTGTAAAAACCCCAAGCTCTGGACTTGAAAACCCACCAATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGTGTAAAAACCCCAAGCTCTGGACTTGAAAACCCACCAATCCC  250

seq1  CACCCTAGAAAGTTCCACCATGGAAAGCTCTGCCCCACAAAGCCATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTAGAAAGTTCCACCATGGAAAGCTCTGCCCCACAAAGCCATTTAA  300

seq1  ATCCTATCCTCTGTTCAGTCCTTTGCTGCTTCTCTCCAGAGCAGGGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATCCTCTGTTCAGTCCTTTGCTGCTTCTCTCCAGAGCAGGGGCAA  350

seq1  CTACCCTTCTGGGTTCTTTCCTCCCAATTTATCTCTTGTGTGAGGTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTCTGGGTTCTTTCCTCCCAATTTATCTCTTGTGTGAGGTTTAT  400

seq1  TGTGCAGAGTCATTTTGCAGTATTCCTTGGCTCCCAACTGCCAGGATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGAGTCATTTTGCAGTATTCCTTGGCTCCCAACTGCCAGGATACC  450

seq1  TTTCTCTCCGGAGCTGGGGAAATATTCCCCAGCCAAAGCAGAGCTGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCGGAGCTGGGGAAATATTCCCCAGCCAAAGCAGAGCTGTAAC  500

seq1  ACTTCCGCTGGGGAAGCCTTTCACCTCAGAGCTGTAACACACAAATCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCGCTGGGGAAGCCTTTCACCTCAGAGCTGTAACACACAAATCCTA  550

seq1  GCTATTACTCAGTGGTGGTCTGAGGCTCAGCATCAAAGCACTTGCTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTACTCAGTGGTGGTCTGAGGCTCAGCATCAAAGCACTTGCTTGGC  600

seq1  ATGCACAAGGCCTCTTTGTTCTTACAGGTACCAATCTGCACCCCAGGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAAGGCCTCTTTGTTCTTACAGGTACCAATCTGCACCCCAGGGGC  650

seq1  ACCTGCTGAGGTTTCCAGGCTTATATGCCAGGGACATGCAGTAAGGTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGAGGTTTCCAGGCTTATATGCCAGGGACATGCAGTAAGGTAGT  700

seq1  AAAAGATAGTTTATTTGATACAAAAAGGGTATTTGGGCTGG  741
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAGTTTATTTGATACAAAAAGGGTATTTGGGCTGG  741

seq1: chr8_74877055_74878090
seq2: B6Ng01-099E11.g_68_1099 (reverse)

seq1  GCTACTATACTGAGCTCACTACAGGGGTGATGTGTCAATCATTTATATAC  50
      |||||||| ||||||||| |||| ||||||||||||||||||||||||| 
seq2  GCTACTAT-CTGAGCTCA-TACAAGGGTGATGTGTCAATCATTTATATA-  47

seq1  CTAG-AGACCTGGCCTGAGTCCTTTAGGTGATCAAAGAGTGGACCTTCAG  99
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGACCTGG-CTGAGTCCTTTAGGTGATCAAAGAGTGGACCTTCAG  96

seq1  CCAAGTGAGGGCCTGGGAGTTGTTCCCACCCACTTACTACCACAGAGGCC  149
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCAAGTGAGGGCCTGGGAGTTGTTCCCACCCACCTACTACCACAGAGGCC  146

seq1  CGGTAGGAAGGCCCAGTCTTTCTGGGCTTACATCCTGCAGGTCCCCCAGA  199
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  CGGTA-GAAGACCCAGTCTTTCTGGGCTTACATCCTGCAGGTCCCCCAGA  195

seq1  ACCTCCACTGTCCAGATTGTGACCCACCTCTGGTGAGGCATTTACTCGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACTGTCCAGATTGTGACCCACCTCTGGTGAGGCATTTACTCGTT  245

seq1  AATGAATATCAGGCCACAGGACACCCACTGGATCCACCTTGCTGAGTGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATATCAGGCCACAGGACACCCACTGGATCCACCTTGCTGAGTGCA  295

seq1  AAAGGGTGGGTGTGCTGAGGTAGGCACTATTTCTATTTTCAAACTGTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTGGGTGTGCTGAGGTAGGCACTATTTCTATTTTCAAACTGTTCT  345

seq1  GCCAAATCTTCCCTCAACAACAGCCGGCCTCAGGCTGCTGAAACCAGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATCTTCCCTCAACAACAGCCGGCCTCAGGCTGCTGAAACCAGCTG  395

seq1  GATTAGCATGGGTTCCTCCACCGCCTGGGAAGGCAAACCCATACAGTATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCATGGGTTCCTCCACCGCCTGGGAAGGCAAACCCATACAGTATA  445

seq1  TGGGTGCCTCCCTCCCTCAGCCAGCATAGATCTACAGCAGCCACTGGTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCCTCCCTCCCTCAGCCAGCATAGATCTACAGCAGCCACTGGTTA  495

seq1  TCCCGAGCCCTGGGACAGACCCTCCAGGGTGCCATAGCAACAGCAGAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGCCCTGGGACAGACCCTCCAGGGTGCCATAGCAACAGCAGAGCA  545

seq1  GTGAGTGCCCTGAGTGTGTGGGGGCTGGGGGCTGCTTCAATGCCTTCCGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGCCCTGAGTGTGTGGGGGCTGGGGGCTGCTTCAATGCCTTCCGG  595

seq1  CCATCCTGGCTGCTAGCGAACACCAGAACCTTCCTGAAATGGAACAAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGGCTGCTAGCGAACACCAGAACCTTCCTGAAATGGAACAAGTA  645

seq1  CATTCCTTTCTATACTCTCCAGTGTACCCAGCGCATTATCTCTTTGCCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTCTATACTCTCCAGTGTACCCAGCGCATTATCTCTTTGCCAC  695

seq1  CATCGTGGGAACGGAATTAAAGTAGTTATATTCAGGGCAGAGGTGCTAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTGGGAACGGAATTAAAGTAGTTATATTCAGGGCAGAGGTGCTAAC  745

seq1  CACAGGCTCAGACAGTGATGCCATTTGACAATACGAAGTAACAAGGGGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTCAGACAGTGATGCCATTTGACAATACGAAGTAACAAGGGGCT  795

seq1  TGGGCATAGACAGGACAGCCAGCAGCACCAGGGCCCTGACCCGCAGGTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATAGACAGGACAGCCAGCAGCACCAGGGCCCTGACCCGCAGGTTC  845

seq1  CATCCTCTTCCTGGGATCTCACAGAAAGGCTGAAAGTTCACAGGATTGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTTCCTGGGATCTCACAGAAAGGCTGAAAGTTCACAGGATTGGG  895

seq1  CTGCTTACAATCCTAAATATTCCCTGTGCCTGTACCCTGCTGACCCTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTACAATCCTAAATATTCCCTGTGCCTGTACCCTGCTGACCCTGTG  945

seq1  AGAAAGCCTTGGCCATTCTGCATAGATAGCATGTGGGTGGGGGAGGACTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCTTGGCCATTCTGCATAGATAGCATGTGGGTGGGGGAGGACTT  995

seq1  TTCTGCTCGAGGAGAATGACTTTTTGCGGAGGAATTC  1036
      |||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCGAGGAGAATGACTTTTTGCGGAGGAATTC  1032