BAC Information

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BAC

Clone NameB6Ng01-099I20
Chromosome8 (Build37)2 (Build37)
Map Location 86,640,387 - 86,641,257151,778,028 - 151,779,092
singlet/doubletsingletsinglet
Overlap geneLOC100039920
Upstream geneLOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552
Downstream genePodnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099I20.bB6Ng01-099I20.g
ACCDH909316DH909317
length7971,059
definitionDH909316|Mus musculus domesticus DNA, BAC clone: B6Ng01-099I20, 5' end.DH909317|Mus musculus domesticus DNA, BAC clone: B6Ng01-099I20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,640,387 - 86,641,257)(151,778,028 - 151,779,092)
sequence
gaattctcttttttttcttttttttctttttttggttttttgagacaggg
tttctctgtatagccctggctgtcctggaactcactttgtagaccaggct
ggcctcgaactcagaaatccatctgcctctccctcctgagtgctgggatt
aaaggtgtgcaccaccacgcctggctcttcttcttcttcttctttttttt
tttttaaaaaagctttatttttcactattttaaagtgtatgcatgcacat
gcatatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcctgtactcctgtgt
gcatgtggatgtaggtattctaaaagaacagaaacactggaatacctgga
gctgcaattctagtcagtagtgagcttcctggtgtggagccaggagtcca
actcgggtcctctgcaagaaaaacatccattctctacttctgagccatct
ctaaccccaaaattctcttcttagaaccctaacctttagcccaggattcc
ctgttgctgagagcaccgagttcttgatacttaagcatttctttaatcaa
atagcaacataaccctccttcttaaatagagtaacttttattttaatgta
atagcatacaactttctgctaacaagaactcttactttttccaagattat
aggttatttgaaaaaacataaagtatgagagaaacacagaaaaaccgggt
gggtgaagggaaaaacttgaatctaaattagagaaacttcatttccgtgg
ggaaccctatcttctaatacttgagttgtgcactggctggttttggg
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacactgacctgtgtgctcaggtttctggcttcctgac
tgtcctgccatggtttcaggacacacaggcacatgccagacaagtattct
gctgctgtactatgcttcctgccctggaagagagttcaggtgttgattct
ggtctggaaaggggtgagggtcggggtgtgggaccagagtgtctcctggc
tgtcccagacccttcctgagtggccaacacctaccacttcccatccagag
tctggaagccattgtgtctagactttaggaatagagtgggttgagagagc
agtggattagaacccatacgatgactgtgcaattggtgaccactgtgtca
agggtgacctagggtactactgtgttttcccatcatcccctgcttcttgc
tcattgtcactactgaaactcagaaatggacctcaaaggctctcaacaca
gaagccagtccaggaatctgttctttttcctgctgattgggaaatgatct
cagggttccatggaaacacagtttgagaaaaagtcccaaagaaaggtaaa
agattatctaacacccttacatctgtgtccctgggcctaagggctgtgac
cagagctggaattcagaaagcacattgtaagtagcctctgagaagcaaca
gaagataatgagtaagtagtagtagtcagacagtggaaggcgcatccttc
acttggaggaggctcagcgcagtgtccagggtcctgggaacgctggcttc
ccaacctttgtgatggctgcaggtgtgttcagtttgtcctgcacttaaag
ggtgtctctcatgagtcaggcatgtgaggaaggagcagacatgttcacac
ccatttaaagggaaagaaaggcattctggaagaaaaattgatttgtgaag
aattcgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86640387_86641257
seq2: B6Ng01-099I20.b_54_330 (reverse)

seq1  CACACACACACACACACACACACACACGCACACACACAGAGAGAGACAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAGAGATCGTGTCTTGTGTGGCTCTCAGATGGAGAAGCTGTAATACCTTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAAGCTCAGCATGTTTATTGCATACAGATAAACAAAGAGATGGCGTTCTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATATACGGCTGAACAAGGAGGCTGGTTTAGCTAATCTCGGTAGGAGCAGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTGGAGGAGAGCAGTCTTCAGGGGGACACTGGGGCAGAAAACCACAGC  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGGCATTTTCTGTGCACACTGTCAACACTGGCACTCAGACTGGAGGAAGG  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTACCATCTCTCTCATTTTTGCCTGGGAAAGGCTTTGCCATTCCCATG  350
                                                        
seq2  --------------------------------------------------  0

seq1  GCTCTGAGTCAATGGGGTGCTTGGGTGTTTGACATGGCTGTACCCCTTAC  400
                                                        
seq2  --------------------------------------------------  0

seq1  CAAACAATACATATTCACTCACTGCTTCACTGGATTCCTACCCCCCATTC  450
                                                 | ||  |
seq2  -------------------------------------------CACACAC  7

seq1  TTACATACTCCTACACACACACA----CATGTGCATTCCTACAC------  490
        ||| || |  |||||||| ||    ||||||||| | |||||      
seq2  ACACACACACACACACACACGCATATGCATGTGCATGCATACACTTTAAA  57

seq1  ACA-TGCATATTATCTCAGTTTCTTTTCTATTGCTGTGATAAG-ACACTA  538
      | | || | | ||    || || |||   |        | ||| | |  |
seq2  ATAGTGAAAAATA---AAGCTTTTTTAAAAAAAAAAAAAGAAGAAGAAGA  104

seq1  TGACCAGCCAGGCAGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAG  588
       ||  |||||||| ||||||| ||||||||||||||||||||||  ||||
seq2  AGAAGAGCCAGGC-GTGGTGGTGCACACCTTTAATCCCAGCACTCAGGAG  153

seq1  GCAGAGGCAGGTGGAATTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  638
      | |||||||| |||| ||||||||||||||||||||||||||||| ||||
seq2  GGAGAGGCAGATGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTG  203

seq1  AGTTCCAGGACAGCCAGGGCTACACAGAGAAAAACCCTATCTCGAAAAAC  688
      |||||||||||||||||||||| ||||||  ||||||| |||| ||||||
seq2  AGTTCCAGGACAGCCAGGGCTATACAGAG--AAACCCTGTCTCAAAAAAC  251

seq1  ---AAAAACAAAAACAA-TAAAGACACTATGACCAGCCGGGCGTGGTGGC  734
         ||||| ||||| ||  ||| | |                        
seq2  CAAAAAAAGAAAAAAAAGAAAAAAAA------------------------  277

seq1  GCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGTTCGAGGCCAGC  784
                                                        
seq2  --------------------------------------------------  277

seq1  CTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATAGAGAAACCCTG  834
                                                        
seq2  --------------------------------------------------  277

seq1  TCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAA  871
                                           
seq2  -------------------------------------  277

seq1: chr2_151778028_151779092
seq2: B6Ng01-099I20.g_68_1126

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACACTGACCTGTGTGCTCAGGTTTCTGGCTTCCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACACTGACCTGTGTGCTCAGGTTTCTGGCTTCCTGAC  200

seq1  TGTCCTGCCATGGTTTCAGGACACACAGGCACATGCCAGACAAGTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGCCATGGTTTCAGGACACACAGGCACATGCCAGACAAGTATTCT  250

seq1  GCTGCTGTACTATGCTTCCTGCCCTGGAAGAGAGTTCAGGTGTTGATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTACTATGCTTCCTGCCCTGGAAGAGAGTTCAGGTGTTGATTCT  300

seq1  GGTCTGGAAAGGGGTGAGGGTCGGGGTGTGGGACCAGAGTGTCTCCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGAAAGGGGTGAGGGTCGGGGTGTGGGACCAGAGTGTCTCCTGGC  350

seq1  TGTCCCAGACCCTTCCTGAGTGGCCAACACCTACCACTTCCCATCCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGACCCTTCCTGAGTGGCCAACACCTACCACTTCCCATCCAGAG  400

seq1  TCTGGAAGCCATTGTGTCTAGACTTTAGGAATAGAGTGGGTTGAGAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGCCATTGTGTCTAGACTTTAGGAATAGAGTGGGTTGAGAGAGC  450

seq1  AGTGGATTAGAACCCATACGATGACTGTGCAATTGGTGACCACTGTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATTAGAACCCATACGATGACTGTGCAATTGGTGACCACTGTGTCA  500

seq1  AGGGTGACCTAGGGTACTACTGTGTTTTCCCATCATCCCCTGCTTCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGACCTAGGGTACTACTGTGTTTTCCCATCATCCCCTGCTTCTTGC  550

seq1  TCATTGTCACTACTGAAACTCAGAAATGGACCTCAAAGGCTCTCAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTCACTACTGAAACTCAGAAATGGACCTCAAAGGCTCTCAACACA  600

seq1  GAAGCCAGTCCAGGAATCTGTTCTTTTTCCTGCTGATTGGGAAATGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGTCCAGGAATCTGTTCTTTTTCCTGCTGATTGGGAAATGATCT  650

seq1  CAGGGTTCCATGGAAACACAGTTTGAGAATAAGTCCCAAAGAAAGGTAAA  700
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGGGTTCCATGGAAACACAGTTTGAGAAAAAGTCCCAAAGAAAGGTAAA  700

seq1  AGATTATCTAACACCCTTACATCTGTGTCCCTGGGCCTAAGGGCTGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATCTAACACCCTTACATCTGTGTCCCTGGGCCTAAGGGCTGTGAC  750

seq1  CAGAGCTGGAATTCAGAAAGCACATTGTAAGTAGCCTCTGAGAAGCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGGAATTCAGAAAGCACATTGTAAGTAGCCTCTGAGAAGCAACA  800

seq1  GAAGATAATGAGTAAGTAGTAGTAGTCAGACAGTGGAAGGCGCAT-CTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAAGATAATGAGTAAGTAGTAGTAGTCAGACAGTGGAAGGCGCATCCTTC  850

seq1  ACTTGGAGGAGGCTCAGCGCAGTGTCCAGGGTCCTGGGAACGCTGGCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGGAGGCTCAGCGCAGTGTCCAGGGTCCTGGGAACGCTGGCTTC  900

seq1  CCAACCTTTGTGATGGCTGCAGGTGTGTTCAGTTTGTTCTTGCACTTAAA  949
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  CCAACCTTTGTGATGGCTGCAGGTGTGTTCAGTTTG-TCCTGCACTTAAA  949

seq1  GTGTGTCTCTCCATGAAGTCAGGCATGTGAGGAAGGAGCAGACATGTTCA  999
      | |||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  GGGTGTCTCT-CATG-AGTCAGGCATGTGAGGAAGGAGCAGACATGTTCA  997

seq1  CACACACTTAAAAGGGAAAGAAAGCCATTCTGGGAAGAAAATATGATTTT  1049
      ||| || || |||||||||||||| |||||| |||||||||  ||| |||
seq2  CACCCA-TTTAAAGGGAAAGAAAGGCATTCT-GGAAGAAAAATTGA-TTT  1044

seq1  GTAGAGGAATTCGGGG  1065
      || || ||||||||||
seq2  GT-GAAGAATTCGGGG  1059