BAC Information

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BAC

Clone NameB6Ng01-099J21
Chromosome8 (Build37)
Map Location 101,884,326 - 102,083,446
singlet/doubletdoublet
Overlap geneCdh8, A330008L17Rik
Upstream genenone
Downstream geneLOC667531, LOC100042069, LOC436054, LOC100042078, LOC100042086
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099J21.bB6Ng01-099J21.g
ACCDH909362DH909363
length1,1531,124
definitionDH909362|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J21, 5' end.DH909363|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,082,284 - 102,083,446)(101,884,326 - 101,885,464)
sequence
gaattcagatttttgaaaagcaatgtaaatggtacatacttggggtgggg
aatgttgctcatcccataaaacacaacttaagcatgaggactgaagttca
aatcaaaaacaggctgtagataatatggttctgtttagaagcacactgta
atcctagtgttccagagaagagacaaaggatctttaaagtaagcttacta
gctagaatgttctaacaagtaagtttcagtttctgcaagagatcctgatt
caagagataaagaggggatgagcaagacagaagtttgatcaaaccctcac
ctacaaatgaatgcccatcatgtttgcacacacctgtacacacatatacc
ctttaaacacacacacacacacccagtacactccaaggacaaaggaaaat
cacaagtatagcaataccttggcaaactgtactttctgatatatggacta
ctaacattaaggaattggttgaattcacaaaggatgataagtgatgcagt
agctgtatttagaagtcctgagttaaaaatgattggtaaaaactgcaaga
ggaacaggcaggagaaggaaaaattataaaataacctctgaaactaagtt
cattaattgctctttctatttgtgtttgtactagaaattttacacagtaa
aatacatttcataataaaaagggaaatgaaattactataaagtatgaaag
tataatgtgaactgttaaaaatatattaaaatttgcaatttgaaagctgt
gtggacaaatatttctctagtggtaatcagtggaacccactaggagtcac
ttgagaagttaccatttatgttaacaaccattaatttaaaatagtatgct
cattataatggcttcatggatcaaactgactttataagaagactgattca
taaattataatttaaaatttattcagtctctactccacactttgtctcca
tatttcctcctttgagtattttgttcccccttctaagaaggacagaagca
cccatactttgggtcgtccacttcttgagctcatgtggtctgtgaaatgt
atcataggactctgaatatttccattttttattaagaaattttctttatt
acatttcaaagtattctctttctagttccctctgaaattccctaccctct
ctc
gaattcagaacaaattctttgatcactggatggggagcaaggaactgtta
aaattatatgtatttttaacagaatttagaaaacaaagagcatgtggatg
catctgtgttggtaataaaaaaggaaaggaaaaactactgcagacacatg
tggaaacctgagaatatttgggtaaacatggacataactatgaatctcat
aattgagttgggaagtagcttaataaatgaaaacaattcagataatattt
tggaattagaaactggaaagtcttcttaataagattttttttttaattag
taaaaacaattccagactttccccggggtttctctgtgcacacccacatt
tctttctaggctgtctcctgtgtgcacatgagtctggatgtcagtaaaga
gagacagcatcttctttttgttttggtttttcttgttactgttccctcat
attttagaacaatggttggtttaatgagacgctcaataataaatatgttg
atccactcttacatcaatccacgaggtctatgtgcagtagacggttagtt
aaattatcatagctgaagtacaccctcaatggccacattccctaaacaag
aaagatgtctcagtagctgtgaaatattaggcaagatgatgtaagtcttt
gagaaaggatggagctggtgtaaagatgtcattcacactatgctaaatgc
tgtaaaatggccgagtccatatctagatcacagaagacccatgacatttt
catttccagaaataaatctgtcaatatgggctatgctttagtgatccagt
ggttttgttaagaagaattaatgagctgatagagaaagcacttgagtcct
ccctgactctgtcctattaaagaactatgtctactgatttttctttttta
aatttctccagtttctattgttatctctcccctttcatttctggtttgta
atttgggtattgtggcctttagtagtctagctaagtgctgtttatcctgt
gggttttctcaaagaaccagcttcttggtctgtgatccttcttaatggtt
cctctcttcgtgaaggaattggagtcctgagcttgatatactgcttctaa
tcctgttggaagtgttggttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102082284_102083446
seq2: B6Ng01-099J21.b_50_1202 (reverse)

seq1  GAGAGGGGGTAGGGGATTTTCAGAGGGGAAACTAGAAAAGAGAATAACAT  50
      ||||| ||||| |||| ||||||||||  |||||| ||||||||||   |
seq2  GAGAGAGGGTA-GGGAATTTCAGAGGG--AACTAG-AAAGAGAATA--CT  44

seq1  TTGAAATGTAAATAAAGAAAATATCTAATAAAAAAATGGAAAAAAATCAG  100
      ||||||||| |||||||||||| ||| |  ||||||||| ||| | ||||
seq2  TTGAAATGT-AATAAAGAAAATTTCTTAATAAAAAATGG-AAATATTCAG  92

seq1  AGTACCTATGATACAATTCACAGACCACATGAAGCTCAAGAAGTTGGACG  150
      ||| ||||||||||| ||||||||||||||| ||||||||||| ||||||
seq2  AGT-CCTATGATACATTTCACAGACCACATG-AGCTCAAGAAG-TGGACG  139

seq1  A-CCAAAGTATGGGTGCTTCTGTCCTTCTTAGAAGGGGGAACAAAATACT  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGTATGGGTGCTTCTGTCCTTCTTAGAAGGGGGAACAAAATACT  189

seq1  CAAAGGAGGAAATATGGAGACAAAGTGTGGAGTAGAGACTGAATAAATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGGAAATATGGAGACAAAGTGTGGAGTAGAGACTGAATAAATTT  239

seq1  TAAATTATAATTTATGAATCAGTCTTCTTATAAAGTCAGTTTGATCCATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATAATTTATGAATCAGTCTTCTTATAAAGTCAGTTTGATCCATG  289

seq1  AAGCCATTATAATGAGCATACTATTTTAAATTAATGGTTGTTAACATAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTATAATGAGCATACTATTTTAAATTAATGGTTGTTAACATAAA  339

seq1  TGGTAACTTCTCAAGTGACTCCTAGTGGGTTCCACTGATTACCACTAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACTTCTCAAGTGACTCCTAGTGGGTTCCACTGATTACCACTAGAG  389

seq1  AAATATTTGTCCACACAGCTTTCAAATTGCAAATTTTAATATATTTTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGTCCACACAGCTTTCAAATTGCAAATTTTAATATATTTTTAA  439

seq1  CAGTTCACATTATACTTTCATACTTTATAGTAATTTCATTTCCCTTTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCACATTATACTTTCATACTTTATAGTAATTTCATTTCCCTTTTTA  489

seq1  TTATGAAATGTATTTTACTGTGTAAAATTTCTAGTACAAACACAAATAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATGTATTTTACTGTGTAAAATTTCTAGTACAAACACAAATAGA  539

seq1  AAGAGCAATTAATGAACTTAGTTTCAGAGGTTATTTTATAATTTTTCCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAATTAATGAACTTAGTTTCAGAGGTTATTTTATAATTTTTCCTT  589

seq1  CTCCTGCCTGTTCCTCTTGCAGTTTTTACCAATCATTTTTAACTCAGGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTGTTCCTCTTGCAGTTTTTACCAATCATTTTTAACTCAGGAC  639

seq1  TTCTAAATACAGCTACTGCATCACTTATCATCCTTTGTGAATTCAACCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATACAGCTACTGCATCACTTATCATCCTTTGTGAATTCAACCAA  689

seq1  TTCCTTAATGTTAGTAGTCCATATATCAGAAAGTACAGTTTGCCAAGGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAATGTTAGTAGTCCATATATCAGAAAGTACAGTTTGCCAAGGTA  739

seq1  TTGCTATACTTGTGATTTTCCTTTGTCCTTGGAGTGTACTGGGTGTGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATACTTGTGATTTTCCTTTGTCCTTGGAGTGTACTGGGTGTGTGT  789

seq1  GTGTGTGTTTAAAGGGTATATGTGTGTACAGGTGTGTGCAAACATGATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTTTAAAGGGTATATGTGTGTACAGGTGTGTGCAAACATGATGG  839

seq1  GCATTCATTTGTAGGTGAGGGTTTGATCAAACTTCTGTCTTGCTCATCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATTTGTAGGTGAGGGTTTGATCAAACTTCTGTCTTGCTCATCCC  889

seq1  CTCTTTATCTCTTGAATCAGGATCTCTTGCAGAAACTGAAACTTACTTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATCTCTTGAATCAGGATCTCTTGCAGAAACTGAAACTTACTTGT  939

seq1  TAGAACATTCTAGCTAGTAAGCTTACTTTAAAGATCCTTTGTCTCTTCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATTCTAGCTAGTAAGCTTACTTTAAAGATCCTTTGTCTCTTCTC  989

seq1  TGGAACACTAGGATTACAGTGTGCTTCTAAACAGAACCATATTATCTACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACTAGGATTACAGTGTGCTTCTAAACAGAACCATATTATCTACA  1039

seq1  GCCTGTTTTTGATTTGAACTTCAGTCCTCATGCTTAAGTTGTGTTTTATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTTTGATTTGAACTTCAGTCCTCATGCTTAAGTTGTGTTTTATG  1089

seq1  GGATGAGCAACATTCCCCACCCCAAGTATGTACCATTTACATTGCTTTTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGCAACATTCCCCACCCCAAGTATGTACCATTTACATTGCTTTTC  1139

seq1  AAAAATCTGAATTC  1163
      ||||||||||||||
seq2  AAAAATCTGAATTC  1153

seq1: chr8_101884326_101885464
seq2: B6Ng01-099J21.g_64_1187

seq1  GAATTCAGAACAAATTCTTTGATCACTGGATGGGGAGCAAGGAACTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACAAATTCTTTGATCACTGGATGGGGAGCAAGGAACTGTTA  50

seq1  AAATTATATGTATTTTTAACAGAATTTAGAAAACAAAGAGCATGTGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATGTATTTTTAACAGAATTTAGAAAACAAAGAGCATGTGGATG  100

seq1  CATCTGTGTTGGTAATAAAAAAGGAAAGGAAAAACTACTGCAGACACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGTTGGTAATAAAAAAGGAAAGGAAAAACTACTGCAGACACATG  150

seq1  TGGAAACCTGAGAATATTTGGGTAAACATGGACATAACTATGAATCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCTGAGAATATTTGGGTAAACATGGACATAACTATGAATCTCAT  200

seq1  AATTGAGTTGGGAAGTAGCTTAATAAATGAAAACAATTCAGATAATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGTTGGGAAGTAGCTTAATAAATGAAAACAATTCAGATAATATTT  250

seq1  TGGAATTAGAAACTGGAAAGTCTTCTTAATAAGATTTTTTTTTTAATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTAGAAACTGGAAAGTCTTCTTAATAAGATTTTTTTTTTAATTAG  300

seq1  TAAAAACAATTCCAGACTTTCCCCGGGGTTTCTCTGTGCACACCCACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAATTCCAGACTTTCCCCGGGGTTTCTCTGTGCACACCCACATT  350

seq1  TCTTTCTAGGCTGTCTCCTGTGTGCACATGAGTCTGGATGTCAGTAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAGGCTGTCTCCTGTGTGCACATGAGTCTGGATGTCAGTAAAGA  400

seq1  GAGACAGCATCTTCTTTTTGTTTTGGTTTTTCTTGTTACTGTTCCCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCATCTTCTTTTTGTTTTGGTTTTTCTTGTTACTGTTCCCTCAT  450

seq1  ATTTTAGAACAATGGTTGGTTTAATGAGACGCTCAATAATAAATATGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAACAATGGTTGGTTTAATGAGACGCTCAATAATAAATATGTTG  500

seq1  ATCCACTCTTACATCAATCCACGAGGTCTATGTGCAGTAGACGGTTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTCTTACATCAATCCACGAGGTCTATGTGCAGTAGACGGTTAGTT  550

seq1  AAATTATCATAGCTGAAGTACACCCTCAATGGCCACATTCCCTAAACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCATAGCTGAAGTACACCCTCAATGGCCACATTCCCTAAACAAG  600

seq1  AAAGATGTCTCAGTAGCTGTGAAATATTAGGCAAGATGATGTAAGTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTCTCAGTAGCTGTGAAATATTAGGCAAGATGATGTAAGTCTTT  650

seq1  GAGAAAGGATGGAGCTGGTGTAAAGATGTCATTCACACTATGCTAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGATGGAGCTGGTGTAAAGATGTCATTCACACTATGCTAAATGC  700

seq1  TGTAAAATGGCCGAGTCCATATCTAGATCACAGAAGACCCATGACATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATGGCCGAGTCCATATCTAGATCACAGAAGACCCATGACATTTT  750

seq1  CATTTCCAGAAATAAATCTGTCAATATGGGCTATGCTTTAGTGATCCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAGAAATAAATCTGTCAATATGGGCTATGCTTTAGTGATCCAGT  800

seq1  GGTTTTGTTAAGAAGAATTAATGAGCTGATAGAGAAAGCACTTGAGTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTAAGAAGAATTAATGAGCTGATAGAGAAAGCACTTGAGTCCT  850

seq1  CCCTGACTCTGTCCTATTAAAGAACTATGTCTACTGATTTTTCTTTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCTGACTCTGTCCTATTAAAGAACTATGTCTACTGATTTTTC-TTTTTT  899

seq1  AAATTTCTCCAGTTTCTATTGTTATCTCTCCCCTTTCATTTCTGGTTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AAATTTCTCCAGTTTCTATTGTTATCTCTCCCCTTTCATTTCTGGTTT--  947

seq1  TTAATTTGGGTATTGTGCCTTTTAGTTAGTCTAGCTAAGTGCTTGTTTAT  1000
       |||||||||||||||| | ||||| |||||||||||||||| |||||||
seq2  GTAATTTGGGTATTGTGGCCTTTAG-TAGTCTAGCTAAGTGC-TGTTTAT  995

seq1  CTTGTTGGTTTTCTCAAAGAACCAGC-TCTTGGTTCTGTTGATCCTTCTT  1049
      | ||| |||||||||||||||||||| |||||| |||| |||||||||||
seq2  CCTGTGGGTTTTCTCAAAGAACCAGCTTCTTGG-TCTG-TGATCCTTCTT  1043

seq1  TATTGTTCCCTCTCTTTCTAATTGATGGATTTGAGCCCTGAGCTTGATTA  1099
       || ||| ||||||||  | |   | | ||| ||| ||||||||||| ||
seq2  AATGGTT-CCTCTCTTCGTGA---AGGAATTGGAGTCCTGAGCTTGA-TA  1088

seq1  TTACCTGCCTTCTATTCCTGTTGGATGTGTTTGTTTCTTT  1139
      |   ||| |||||| |||||||||| ||| ||| ||||||
seq2  T--ACTG-CTTCTAATCCTGTTGGAAGTG-TTGGTTCTTT  1124