BAC Information

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BAC

Clone NameB6Ng01-100C01
Chromosome8 (Build37)
Map Location 8,566,350 - 8,785,278
singlet/doubletdoublet
Overlap geneEfnb2, 9430010O03Rik
Upstream geneLOC100039836
Downstream geneTmem28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100C01.bB6Ng01-100C01.g
ACCDH909718DH909719
length1,1171,009
definitionDH909718|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C01, 5' end.DH909719|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,784,163 - 8,785,278)(8,566,350 - 8,567,359)
sequence
gaattctttcctgtctgcttcaccacctacccattcttgaaggagttaca
gcagtcacgatggtgtttactcaacacaactccttcgggctgtcacttct
tcctcatctggtagacgccatcgagtcaccaaattgagatactcatgctt
taaataccatttgtcattttaacaatttactaaataaacgtactcacctc
ttcattgagcatagagcgagacttcatctcggacaaagcataaaagaaag
gaagtcattgggcatatacaacgtctgaaagtagggtaggaaagatgagg
ccagtgggaaacagggaggcaggagcgaagaggcggggctgagtagatga
atgatgctcaggtgagcacacaggtgtccttgaaggaggaatcctttttc
tgaccaaacagaagccacttaaatacccccacagccttctgcccagtgcg
tgaaagattcagtaaaatcaacactgcctctcagggttgaatcgcaacac
cactgaggtgactcctcccagccttctgtactctttagttcataacagct
tttgttgctgttcattcattttctgcttacaattgcttaggtaagtcaca
cttttagattgtttcttttacaagacaagcgaccatgcagttagaaagtc
tgcatccagtgtggtcttagactggggtctggtgtgttttgggagtttct
caagggctacgccttgcttctcatgccctgagtgcctgtcagacaaggcc
aggggccattctgtatgtgaaagtaggagagcccttctccacttacccct
cactggggcataccttagactttagagagatggaagtaaggtttcagaac
taatatcacttgaaactctgacttctttgaaccttttgtcccaggaattt
gcttcaggggaaataccccttgtctgagggacttgaacttttcttggagg
ataaattatacctgaagggcccaaatagtgggtctgtggacacaggcagt
tggacagtggtgactgacggagttatgatggagttatgggactgacatcc
caagaagctgattgggaatttagcattgttggccatcagcaagaggaggt
gggagaaggaactgagt

gaattctctgcctttttaggctggagaaggcgaggacacaggctagacag
gtagccaagatagacactcaggcctgcacaggagaattatgaagggagat
acgaggggcagtaggttcccactaaatggatgtcttgggcttgccatctt
tcacagtaattgctgtgtccgggaagttgactgtctctggagatgaatct
attttaagtttaatggatcagtagacactgttgaaagactagtatgggtg
gctttccttgactcttccagtctgagtgaagaggtgcctataatgctgta
caggtacagtgcacaccaatttcttctcacctcctcctccagccccccaa
aacaaaccaccttctgtgtgtgtgtgtgtgtgtgtgtgcataaaatacta
agtcacttgaatatattagtaataatatttttgttttcctatacccgtct
ctccccctgtcagtgatataatgtgcacttcaaaccaaatcgatacaacc
caagaaaaagcagagtctgcgcgtgcgcttattcactgtgatttgcgttg
gcctttatggcagccgaatgtgcaattttcatgaacttttatttgaaaga
accttggcattcaaagatataacctttgtggaataataaaaagccaccat
aaatgtctgtggcacgtagtcattagtgatctttctgaagagcagatgaa
aatcactcaccactgtgtataaaaagctacgtagctgacgcagactccac
cagcacccaccctacacttcagaatctctgcagctctctgtctactgttg
gtccatctggaaacacttggaagaaaatgataagaatatcccttttcaaa
agcatgactttaaaagtgaagacgaaagaccactatgaagatggcatttt
ctaattctttgtgtctgtctattaatgctaagaatttatctactgaccac
ctgcacaggctgcaggcttatggtggtgagccatttctgtgtgggttcag
ttttcctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_8784163_8785278
seq2: B6Ng01-100C01.b_40_1156 (reverse)

seq1  ACTCATGTTCCTTCT-CCACCTCCTCCTTTCCTGATGGCACAAC-ATGCT  48
      ||||| ||||||||| ||||||||||  || |||||||| |||| |||||
seq2  ACTCA-GTTCCTTCTCCCACCTCCTC--TTGCTGATGGC-CAACAATGCT  46

seq1  AAATTCCCAACTCAGCTTCTCTGGGGATGCTCAGTCCCATTATCTCCATC  98
      |||||||||| ||||||  ||| |||||| ||||||||| || |||||||
seq2  AAATTCCCAA-TCAGCT--TCTTGGGATG-TCAGTCCCA-TAACTCCATC  91

seq1  ATAACTCTGTCAGTCCACACTGTCCAACTGCCTGTGTCCACAGACCCACT  148
      ||||||| |||||||  |||||||||||||||||||||||||||||||| 
seq2  ATAACTCCGTCAGTCACCACTGTCCAACTGCCTGTGTCCACAGACCCAC-  140

seq1  TATTTGGG-CCTTCAGGTATAATTTTTTCTCCAAG-AAAGTTCAAGTCCC  196
      |||||||| |||||||||||||||| | ||||||| ||||||||||||||
seq2  TATTTGGGCCCTTCAGGTATAATTTATCCTCCAAGAAAAGTTCAAGTCCC  190

seq1  TCAGAC-ATGGGTATTT-CCCTGAAGC-AATTCCTGGGAC-AAAGGTTC-  241
      |||||| | |||||||| ||||||||| |||||||||||| |||||||| 
seq2  TCAGACAAGGGGTATTTCCCCTGAAGCAAATTCCTGGGACAAAAGGTTCA  240

seq1  AAGAAGTCAGAGTTTC-AGTGATATTAGTTCTGAAACCTTACTTCCATCT  290
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGAAGTCAGAGTTTCAAGTGATATTAGTTCTGAAACCTTACTTCCATCT  290

seq1  CTCTTGAAGTCTAAGGTATGCCCCAGTGAGGGGTAAGTGGAGAAGGGCTC  340
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTC-TAAAGTCTAAGGTATGCCCCAGTGAGGGGTAAGTGGAGAAGGGCTC  339

seq1  TCCTACTTTCACATACAGAATGG-CCCTGGCCTTGTCTGACAGGCACTCA  389
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCTACTTTCACATACAGAATGGCCCCTGGCCTTGTCTGACAGGCACTCA  389

seq1  GGGCATGAGAAGCAAGGCGTAGCCCTTGAGAAACTCCC-AAACACACCAG  438
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGCATGAGAAGCAAGGCGTAGCCCTTGAGAAACTCCCAAAACACACCAG  439

seq1  ACCCCAGTCTAAGACCACACTGGATGCAGACTTTCTAACTGCATGGTCGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGTCTAAGACCACACTGGATGCAGACTTTCTAACTGCATGGTCGC  489

seq1  TTGTCTTGTAAAAGAAACAATCTAAAAGTGTGACTTACCTAAGCAATTGT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGTAAAAGAAACAATCTAAAAGTGTGACTTACCTAAGCAATTGT  539

seq1  AAGCAGAAAATGAATGAACAGCAACAAAAGCTGTTATGAACTAAAGAGTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAAATGAATGAACAGCAACAAAAGCTGTTATGAACTAAAGAGTA  589

seq1  CAGAAGGCTGGGAGGAGTCACCTCAGTGGTGTTGCGATTCAACCCTGAGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCTGGGAGGAGTCACCTCAGTGGTGTTGCGATTCAACCCTGAGA  639

seq1  GGCAGTGTTGATTTTACTGAATCTTTCACGCACTGGGCAGAAGGCTGTGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGTTGATTTTACTGAATCTTTCACGCACTGGGCAGAAGGCTGTGG  689

seq1  GGGTATTTAAGTGGCTTCTGTTTGGTCAGAAAAAGGATTCCTCCTTCAAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTAAGTGGCTTCTGTTTGGTCAGAAAAAGGATTCCTCCTTCAAG  739

seq1  GACACCTGTGTGCTCACCTGAGCATCATTCATCTACTCAGCCCCGCCTCT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTGTGTGCTCACCTGAGCATCATTCATCTACTCAGCCCCGCCTCT  789

seq1  TCGCTCCTGCCTCCCTGTTTCCCACTGGCCTCATCTTTCCTACCCTACTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCCTGCCTCCCTGTTTCCCACTGGCCTCATCTTTCCTACCCTACTT  839

seq1  TCAGACGTTGTATATGCCCAATGACTTCCTTTCTTTTATGCTTTGTCCGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACGTTGTATATGCCCAATGACTTCCTTTCTTTTATGCTTTGTCCGA  889

seq1  GATGAAGTCTCGCTCTATGCTCAATGAAGAGGTGAGTACGTTTATTTAGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTCTCGCTCTATGCTCAATGAAGAGGTGAGTACGTTTATTTAGT  939

seq1  AAATTGTTAAAATGACAAATGGTATTTAAAGCATGAGTATCTCAATTTGG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTAAAATGACAAATGGTATTTAAAGCATGAGTATCTCAATTTGG  989

seq1  TGACTCGATGGCGTCTACCAGATGAGGAAGAAGTGACAGCCCGAAGGAGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCGATGGCGTCTACCAGATGAGGAAGAAGTGACAGCCCGAAGGAGT  1039

seq1  TGTGTTGAGTAAACACCATCGTGACTGCTGTAACTCCTTCAAGAATGGGT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGAGTAAACACCATCGTGACTGCTGTAACTCCTTCAAGAATGGGT  1089

seq1  AGGTGGTGAAGCAGACAGGAAAGAATTC  1116
      ||||||||||||||||||||||||||||
seq2  AGGTGGTGAAGCAGACAGGAAAGAATTC  1117


seq1: chr8_8566350_8567359
seq2: B6Ng01-100C01.g_69_1077

seq1  GAATTCTCTGCCTTTTTAGGCTGGAGAAGGCGAGGACACAGGCTAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCTTTTTAGGCTGGAGAAGGCGAGGACACAGGCTAGACAG  50

seq1  GTAGCCAAGATAGACACTCAGGCCTGCACAGGAGAATTATGAAGGGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAAGATAGACACTCAGGCCTGCACAGGAGAATTATGAAGGGAGAT  100

seq1  ACGAGGGGCAGTAGGTTCCCACTAAATGGATGTCTTGGGCTTGCCATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGGGCAGTAGGTTCCCACTAAATGGATGTCTTGGGCTTGCCATCTT  150

seq1  TCACAGTAATTGCTGTGTCCGGGAAGTTGACTGTCTCTGGAGATGAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTAATTGCTGTGTCCGGGAAGTTGACTGTCTCTGGAGATGAATCT  200

seq1  ATTTTAAGTTTAATGGATCAGTAGACACTGTTGAAAGACTAGTATGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGTTTAATGGATCAGTAGACACTGTTGAAAGACTAGTATGGGTG  250

seq1  GCTTTCCTTGACTCTTCCAGTCTGAGTGAAGAGGTGCCTATAATGCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTTGACTCTTCCAGTCTGAGTGAAGAGGTGCCTATAATGCTGTA  300

seq1  CAGGTACAGTGCACACCAATTTCTTCTCACCTCCTCCTCCAGCCCCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACAGTGCACACCAATTTCTTCTCACCTCCTCCTCCAGCCCCCCAA  350

seq1  AACAAACCACCTTCTGTGTGTGTGTGTGTGTGTGTGTGCATAAAATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCACCTTCTGTGTGTGTGTGTGTGTGTGTGTGCATAAAATACTA  400

seq1  AGTCACTTGAATATATTAGTAATAATATTTTTGTTTTCCTATACCCGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTGAATATATTAGTAATAATATTTTTGTTTTCCTATACCCGTCT  450

seq1  CTCCCCCTGTCAGTGATATAATGTGCACTTCAAACCAAATCGATACAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTGTCAGTGATATAATGTGCACTTCAAACCAAATCGATACAACC  500

seq1  CAAGAAAAAGCAGAGTCTGCGCGTGCGCTTATTCACTGTGATTTGCGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAAGCAGAGTCTGCGCGTGCGCTTATTCACTGTGATTTGCGTTG  550

seq1  GCCTTTATGGCAGCCGAATGTGCAATTTTCATGAACTTTTATTTGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATGGCAGCCGAATGTGCAATTTTCATGAACTTTTATTTGAAAGA  600

seq1  ACCTTGGCATTCAAAGATATAACCTTTGTGGAATAATAAAAAGCCACCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGCATTCAAAGATATAACCTTTGTGGAATAATAAAAAGCCACCAT  650

seq1  AAATGTCTGTGGCACGTAGTCATTAGTGATCTTTCTGAAGAGCAGATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTGTGGCACGTAGTCATTAGTGATCTTTCTGAAGAGCAGATGAA  700

seq1  AATCACTCACCACTGTGTATAAAAAGCTACGTAGCTGACGCAGACCCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATCACTCACCACTGTGTATAAAAAGCTACGTAGCTGACGCAGACTCCAC  750

seq1  CAGCACCCACCCTACACTTCAGAATCTCTGCAGCTCTCTGTCTACTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCCACCCTACACTTCAGAATCTCTGCAGCTCTCTGTCTACTGTTG  800

seq1  GTCCATCTGGAAACACTTGGAAGAAAATGATAAGAATATCCCTTTTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCCATCTGGAAACACTTGGAAGAAAATGATAAGAATATCCCTTTTC-AA  849

seq1  AAGCATGACATTAAAAGTGAAGACGAAAGACCACTATGAAGATGGCATTT  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGACTTTAAAAGTGAAGACGAAAGACCACTATGAAGATGGCATTT  899

seq1  TCTAATTCTTTGTGTCTGTCTAATAAATGCTAAGAATTTATCTACTGACC  950
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  TCTAATTCTTTGTGTCTGTCT-ATTAATGCTAAGAATTTATCTACTGACC  948

seq1  A-CTGCACAGGCTGCAAGCATATGGTGGTGAGCAATTTCTGTGTGGTTTC  999
      | |||||||||||||| || ||||||||||||| |||||||||||| |||
seq2  ACCTGCACAGGCTGCAGGCTTATGGTGGTGAGCCATTTCTGTGTGGGTTC  998

seq1  AGTTTTCCTAC  1010
      |||||||||||
seq2  AGTTTTCCTAC  1009


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