This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
B6Ng01-100K17
Chromosome
8 (Build37)
Map Location
8,883,043 - 9,034,632
singlet/doublet
doublet
Overlap gene
none
Upstream gene
LOC100039836
,
Efnb2
,
9430010O03Rik
Downstream gene
Tmem28
,
Lig4
,
Abhd13
,
Tnfsf13b
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC100039836
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100039836
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
name
Efnb2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13642
MGI:105097
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
9430010O03Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:234023
MGI:2442985
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Tmem28
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:270028
MGI:2142765
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Lig4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:319583
MGI:1335098
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Abhd13
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:68904
MGI:1916154
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Tnfsf13b
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:24099
MGI:1344376
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100039836
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149258346
GeneID:100039836
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
product
: hypothetical protein LOC100039836
transcript_id
: XM_001473637.1
name
Efnb2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:144227251
GeneID:13642
MGI:105097
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ephrin B2
transcript_id
: NM_010111.3
name
9430010O03Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:134152668
GeneID:234023
MGI:2442985
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA 9430010O03 gene
transcript_id
: NM_176849.3
name
Tmem28
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118129839
GeneID:270028
MGI:2142765
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: transmembrane protein 28
transcript_id
: NM_173446.2
name
Lig4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:84794636
GeneID:319583
MGI:1335098
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ligase IV, DNA, ATP-dependent
transcript_id
: NM_176953.3
name
Abhd13
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124487440
GeneID:68904
MGI:1916154
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: abhydrolase domain containing 13
transcript_id
: NM_001081119.1
name
Tnfsf13b
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:15826857
GeneID:24099
MGI:1344376
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: tumor necrosis factor (ligand) superfamily, member 13b
transcript_id
: NM_033622.1
name
LOC100039836
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149258347
GeneID:100039836
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001473687.1
name
Efnb2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31542597
CCDS:CCDS22090.1
GeneID:13642
MGI:105097
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]
GO_function
: GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0001945 - lymph vessel development [Evidence IMP]; GO:0007399 - nervous system development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IMP]
codon_start
: 1
product
: ephrin B2
protein_id
: NP_034241.2
name
9430010O03Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:134152669
GeneID:234023
MGI:2442985
definition
codon_start
: 1
product
: hypothetical protein LOC234023
protein_id
: NP_789819.2
name
Tmem28
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27734096
GeneID:270028
MGI:2142765
definition
codon_start
: 1
product
: transmembrane protein 28
protein_id
: NP_775622.1
name
Lig4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:84794637
CCDS:CCDS22092.1
GeneID:319583
MGI:1335098
definition
GO_function
: GO:0003910 - DNA ligase (ATP) activity [Evidence TAS]; GO:0000166 - nucleotide binding [Evidence IEA]
GO_process
: GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006281 - DNA repair [Evidence TAS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]
codon_start
: 1
product
: DNA ligase IV
protein_id
: NP_795927.2
name
Abhd13
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124487441
GeneID:68904
MGI:1916154
definition
GO_function
: GO:0016787 - hydrolase activity [Evidence IEA]
GO_process
: GO:0006725 - aromatic compound metabolism [Evidence IEA]
codon_start
: 1
product
: abhydrolase domain containing 13
protein_id
: NP_001074588.1
name
Tnfsf13b
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:15826858
CCDS:CCDS22094.1
GeneID:24099
MGI:1344376
definition
GO_component
: GO:0005615 - extracellular space [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005125 - cytokine activity [Evidence IEA]; GO:0005164 - tumor necrosis factor receptor binding [Evidence IEA]
GO_process
: GO:0031296 - B cell costimulation [Evidence IDA]; GO:0001782 - B cell homeostasis [Evidence IMP]; GO:0006955 - immune response [Evidence IEA]; GO:0048305 - immunoglobulin secretion [Evidence IGI]; GO:0030890 - positive regulation of B cell proliferation [Evidence IDA]; GO:0045885 - positive regulation of survival gene product activity [Evidence IDA]; GO:0042102 - positive regulation of T cell proliferation [Evidence IDA]; GO:0050776 - regulation of immune response [Evidence IMP]; GO:0031295 - T cell costimulation [Evidence IDA]
codon_start
: 1
product
: tumor necrosis factor (ligand) superfamily, member 13b
protein_id
: NP_296371.1
clone name
MSMg01-271H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-092O18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-156A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477A22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-149G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493F14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-331K07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-396K20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-089K09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-260I07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-132L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-100A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-297J11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-470J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-156L09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-068I06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-217C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-423G24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-145E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-377B09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-430D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517O08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-426N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-295A14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-477D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-462A13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-128F23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-054A18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-178E04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-344J22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-344J23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-345G15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-359P05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-105K13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493K05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-522C03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396O15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-456H16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-525J02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-122F09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-466C24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-361B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-163J18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-163N14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-070A05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-296F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-147L05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-237J15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-470A11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-458N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066F15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-233N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-168F21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-294C18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-420E07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-264A09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-083C18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080M09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-527L11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493M11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-217P13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-051B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-526J18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-325P22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322I23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-458E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-086C07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-052C15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-453C07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-318J13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-060P07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-144N08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-460L01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-532K03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-114N08
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-114O08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-408J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384E17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-141F12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-397B03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-105I21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-484L11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-450I21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-509L18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-490L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-366E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-363K20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-111I17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-387A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-276P11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-396C15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-428H10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-277I24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-210P20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-333K11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-394I09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-095D21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-488D18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-166O10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-045E08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-343P13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-125H06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-085K24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-151G22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-187D07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-326I20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-011D01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-344H17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-147K18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-085E21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-025H22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-054I10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-326P21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-058M23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-340F02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-305D08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-279N01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-151F09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-100C01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-246C13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-055B23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-237N23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-167B24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-026N14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-307D04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-094C20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-225O08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-063D13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-069E05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-299A04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-300F08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-100K17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-239E08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-301N20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-211P20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-076G21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-302A10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-302C05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259F17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-135L24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-224D18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-218F10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-229M19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-277K23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-097P02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-063C08
singlet/doublet
doublet
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unique
clone name
B6Ng01-100N20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-063J01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-227A04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-184B18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-328L20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-052G12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-246B06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-134E02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-082I01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-263A23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-321G11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-044E17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-009J12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-209H20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-342N17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-107A14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-107P09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-076J02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-293K15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-130I15
singlet/doublet
doublet
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unique
clone name
B6Ng01-225E09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-034I23
singlet/doublet
singlet
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unique
clone name
B6Ng01-165A12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-013N19
singlet/doublet
doublet
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unique
clone name
B6Ng01-117O23
singlet/doublet
doublet
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unique
clone name
B6Ng01-279N06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-143P19
singlet/doublet
doublet
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unique
clone name
B6Ng01-060K11
singlet/doublet
singlet
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unique
clone name
B6Ng01-134K10
singlet/doublet
doublet
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unique
clone name
B6Ng01-129A04
singlet/doublet
singlet
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B6Ng01-223F13
singlet/doublet
doublet
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unique
clone name
B6Ng01-276B12
singlet/doublet
singlet
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unique
clone name
B6Ng01-027N21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-175G12
singlet/doublet
doublet
plural/unique
unique