BAC Information

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BAC

Clone NameB6Ng01-100K17
Chromosome8 (Build37)
Map Location 8,883,043 - 9,034,632
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneTmem28, Lig4, Abhd13, Tnfsf13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100K17.bB6Ng01-100K17.g
ACCDH910099DH910100
length1,0051,114
definitionDH910099|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K17, 5' end.DH910100|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,033,624 - 9,034,632)(8,883,043 - 8,884,145)
sequence
gaattccaaaaacaggaatgaaccgaaaacccatgttgcttcggtgatgc
ttacaattgtatttcctcttatcccagtgtaatggtttatatatgcttgg
cccagggagtggcactactagaaggtgtggactttgttggtgtagctgtg
tcactgtgcttgtaggcttcttcccatcctagctccttggaagtcagaat
tctgctagcagccttcagatgaagatgtagaactctagcccctcctgccc
agatgctgccatgttcccaccttgatgataatggactgaacctctgaacc
tgtaagccagacccaattaaatgctgtcctttataagagttgccttggtc
atggtgtctgttcacagcagtcagaccctaactaagacaccaagttaaaa
taaatttaattggaaatggcaccaaaaatgaatgaactgatgcataatac
ttgatagactaaatactaagagtatgcctcatgaaagatttcaaactatc
aaacatcacctgtcgcataatttttgagaactatgtagaacaagcaaata
taattaagtttcattcttaaaaaaaaaaaagactcagagaggtgtagatt
attcaccgatgtcagtcactcatgaatatgccattatgaagatgaagagg
tgggcttgacaatcaggtcagtctggatgcaagtcttacagttgatggtg
gttctatttcagggggggctgtggggggtgaagcagaggtgggagaaact
ggggatgtgagagctgttcctcgagttgtcgagttggtcccagcctggtc
tttgtgccacctgatgtactgagatgggagcaagctgagttgcaagtgtc
tgctacatggacagaagccaccgctgcatcacctctgtgaagcatttttc
atcataaacctgtgaatcaaaaaaaaaataaaaaaagagaaagaaagaaa
aggaaatcttcctccctaatttcttcctgcagatatttggtcatagtcac
aagaa

gaattcctttcatcataactgtgacccaggaaaagcaacctgaagaagaa
agggagtattcgggctcacagttcaaaagcgcagaggcagaagtaactct
gttatggctcctcagatttcagtgaaataggaagcaaagagcaggaaatg
ctgatgtccaactgactttctgatgtttctgttccttcaccctggatccc
cacccatggattgctgcccaaggtcaggatggaacttccttccttagtca
catcaagggaatgctcagatgtgggcctcttaagtgatttcaaatccagt
tgagtgcccatgcagaccaagtggggaacagtaggaacctacagagtgac
agagtgagacaaacttacatttgggggtggggtttacacgtgtgaggtga
ttgtttctaatccacgtggtgggatacatgtaggatgagtgtgtcttact
ggaggataaattccagaaaggtaagagtcagaaagcagaaggcaagccca
gagcttgagtagtagtgatattgaataatacttgatctagctttaagcaa
acgctggagggatgaggttctttagaaactacatcagagatgaattgtgg
tgacatggcacagttggggagtgactgttgagcccagaaaagataatctg
agagtgaatcctgcccctgtacccagttttagcagaaagtggaagaatag
ccagaccgagagacaggaaccctgacctttcattaccaaggcaaagatgc
cgttttaaaatcttatttcaactgaaacacagcctacacaaactttcctg
tctccatgattgtaaaagccagtcatcactcccctccaatgcgtatgaca
tttgacccccccccccttgtttctcatggcccttgtcactctctaacact
gaaagtatgaatttttttttaacagacacatcattttctaatagacttat
gaagattctagctagttatcagaatcaatttctattcttctttgactcac
tgagaagatgtggcacataaataggcacttggttttttatgaagagaaga
agtgaatctaattggtgtaacagaaagattaatgtagacttatgttaaaa
aggattgcccaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_9033624_9034632
seq2: B6Ng01-100K17.b_47_1051 (reverse)

seq1  TTCTTGTGACTATGACAAAATATCTGGCAGGAAGAAATTTAGGGAGGAAG  50
      |||||||||||||||| |||||||| ||||||||||| ||||||||||||
seq2  TTCTTGTGACTATGACCAAATATCT-GCAGGAAGAAA-TTAGGGAGGAAG  48

seq1  GATTTTCTTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTGATTCACAG  100
         |||| ||||||||  || ||||||||| |||||||||||||||||||
seq2  --ATTTCCTTTTCTTTCTTTCTCTTTTTTTATTTTTTTTTTGATTCACAG  96

seq1  GTTTATGATGGAAAAATGCTTCACAGAGGTGATGGCAGC-GTGGCTTCTG  149
      ||||||||| ||||||||||||||||||||||| ||||| ||||||||||
seq2  GTTTATGAT-GAAAAATGCTTCACAGAGGTGAT-GCAGCGGTGGCTTCTG  144

seq1  TCCATGTGGCAGACACTTGCAACTCAGCTTGCTCCCATCTCAGTACATCA  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTAGCAGACACTTGCAACTCAGCTTGCTCCCATCTCAGTACATCA  194

seq1  GGTGGCACAAAGACCAGGCTGGGACCAACTCGACAACTCGAGGAACAGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACAAAGACCAGGCTGGGACCAACTCGACAACTCGAGGAACAGCT  244

seq1  CTCACATCCCCAGTTTCTCCCACCTCTGCTTCACCCCCCACAG-CCCCCC  298
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTCACATCCCCAGTTTCTCCCACCTCTGCTTCACCCCCCACAGCCCCCCC  294

seq1  TGAAATAGAACCACCATCAACTGTAAGACTTGCATCCAGACTGACCTGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGAACCACCATCAACTGTAAGACTTGCATCCAGACTGACCTGAT  344

seq1  TGTCAAGCCCACCTCTTCATCTTCATAATGGCATATTCATGAGTGACTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGCCCACCTCTTCATCTTCATAATGGCATATTCATGAGTGACTGA  394

seq1  CATCGGTGAATAATCTACACCTCTCTGAGTCTTTTTTTTTTTTAAGAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGTGAATAATCTACACCTCTCTGAGTCTTTTTTTTTTTTAAGAATG  444

seq1  AAACTTAATTATATTTGCTTGTTCTACATAGTTCTCAAAAATTATGCGAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAATTATATTTGCTTGTTCTACATAGTTCTCAAAAATTATGCGAC  494

seq1  AGGTGATGTTTGATAGTTTGAAATCTTTCATGAGGCATACTCTTAGTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATGTTTGATAGTTTGAAATCTTTCATGAGGCATACTCTTAGTATT  544

seq1  TAGTCTATCAAGTATTATGCATCAGTTCATTCATTTTTGGTGCCATTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTATCAAGTATTATGCATCAGTTCATTCATTTTTGGTGCCATTTCC  594

seq1  AATTAAATTTATTTTAACTTGGTGTCTTAGTTAGGGTCTGACTGCTGTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTTATTTTAACTTGGTGTCTTAGTTAGGGTCTGACTGCTGTGA  644

seq1  ACAGACACCATGACCAAGGCAACTCTTATAAAGGACAGCATTTAATTGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACCATGACCAAGGCAACTCTTATAAAGGACAGCATTTAATTGGG  694

seq1  TCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGTGGGAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGTGGGAACA  744

seq1  TGGCAGCATCTGGGCAGGAGGGGCTAGAGTTCTACATCTTCATCTGAAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCATCTGGGCAGGAGGGGCTAGAGTTCTACATCTTCATCTGAAGG  794

seq1  CTGCTAGCAGAATTCTGACTTCCAAGGAGCTAGGATGGGAAGAAGCCTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGCAGAATTCTGACTTCCAAGGAGCTAGGATGGGAAGAAGCCTAC  844

seq1  AAGCACAGTGACACAGCTACACCAACAAAGTCCACACCTTCTAGTAGTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGTGACACAGCTACACCAACAAAGTCCACACCTTCTAGTAGTGC  894

seq1  CACTCCCTGGGCCAAGCATATATAAACCATTACACTGGGATAAGAGGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTGGGCCAAGCATATATAAACCATTACACTGGGATAAGAGGAAA  944

seq1  TACAATTGTAAGCATCACCGAAGCAACATGGGTTTTCGGTTCATTCCTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTGTAAGCATCACCGAAGCAACATGGGTTTTCGGTTCATTCCTGT  994

seq1  TTTTGGAATTC  1009
      |||||||||||
seq2  TTTTGGAATTC  1005


seq1: chr8_8883043_8884145
seq2: B6Ng01-100K17.g_70_1183

seq1  GAATTCCTTTCATCATAACTGTGACCCAGGAAAAGCAACCTGAAGAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCATCATAACTGTGACCCAGGAAAAGCAACCTGAAGAAGAA  50

seq1  AGGGAGTATTCGGGCTCACAGTTCAAAAGCGCAGAGGCAGAAGTAACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTATTCGGGCTCACAGTTCAAAAGCGCAGAGGCAGAAGTAACTCT  100

seq1  GTTATGGCTCCTCAGATTTCAGTGAAATAGGAAGCAAAGAGCAGGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGCTCCTCAGATTTCAGTGAAATAGGAAGCAAAGAGCAGGAAATG  150

seq1  CTGATGTCCAACTGACTTTCTGATGTTTCTGTTCCTTCACCCTGGATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCCAACTGACTTTCTGATGTTTCTGTTCCTTCACCCTGGATCCC  200

seq1  CACCCATGGATTGCTGCCCAAGGTCAGGATGGAACTTCCTTCCTTAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATGGATTGCTGCCCAAGGTCAGGATGGAACTTCCTTCCTTAGTCA  250

seq1  CATCAAGGGAATGCTCAGATGTGGGCCTCTTAAGTGATTTCAAATCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGGGAATGCTCAGATGTGGGCCTCTTAAGTGATTTCAAATCCAGT  300

seq1  TGAGTGCCCATGCAGACCAAGTGGGGAACAGTAGGAACCTACAGAGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCCCATGCAGACCAAGTGGGGAACAGTAGGAACCTACAGAGTGAC  350

seq1  AGAGTGAGACAAACTTACATTTGGGGGTGGGGTTTACACGTGTGAGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGACAAACTTACATTTGGGGGTGGGGTTTACACGTGTGAGGTGA  400

seq1  TTGTTTCTAATCCACGTGGTGGGATACATGTAGGATGAGTGTGTCTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTAATCCACGTGGTGGGATACATGTAGGATGAGTGTGTCTTACT  450

seq1  GGAGGATAAATTCCAGAAAGGTAAGAGTCAGAAAGCAGAAGGCAAGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATAAATTCCAGAAAGGTAAGAGTCAGAAAGCAGAAGGCAAGCCCA  500

seq1  GAGCTTGAGTAGTAGTGATATTGAATAATACTTGATCTAGCTTTAAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGAGTAGTAGTGATATTGAATAATACTTGATCTAGCTTTAAGCAA  550

seq1  ACGCTGGAGGGATGAGGTTCTTTAGAAACTACATCAGAGATGAATTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGAGGGATGAGGTTCTTTAGAAACTACATCAGAGATGAATTGTGG  600

seq1  TGACATGGCACAGTTGGGGAGTGACTGTTGAGCCCAGAAAAGATAATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGCACAGTTGGGGAGTGACTGTTGAGCCCAGAAAAGATAATCTG  650

seq1  AGAGTGAATCCTGCCCCTGTACCCAGTTTTAGCAGAAAGTGGAAGAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAATCCTGCCCCTGTACCCAGTTTTAGCAGAAAGTGGAAGAATAG  700

seq1  CCAGACCGAGAGACAGGAACCCTGACCTTTCATTACCAAGGCAAAGATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCGAGAGACAGGAACCCTGACCTTTCATTACCAAGGCAAAGATGC  750

seq1  CGTTTTAAAATCTTATTTCAACTGAAACACAGCCTACACAAACTTTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTAAAATCTTATTTCAACTGAAACACAGCCTACACAAACTTTCCTG  800

seq1  TCTCCATGATTGTAAAAGCCAGTCATCACTCCCCTCCAATGCGTATGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGATTGTAAAAGCCAGTCATCACTCCCCTCCAATGCGTATGACA  850

seq1  TTTGACCCCCCCCCCC-TGTTTCTCCATGGCCC-TGTCACTCTCT-ACAC  897
      |||||||||||||||| ||||||| |||||||| ||||||||||| ||||
seq2  TTTGACCCCCCCCCCCTTGTTTCT-CATGGCCCTTGTCACTCTCTAACAC  899

seq1  TG-AAGTATG-ATTTTTTTTTAACAGACACATCA-TTTCT-ATAGAC-TA  942
      || ||||||| ||||||||||||||||||||||| ||||| |||||| ||
seq2  TGAAAGTATGAATTTTTTTTTAACAGACACATCATTTTCTAATAGACTTA  949

seq1  TG-AGATTCTAGCTAG-TATCAGAATCTATTTCTTATTCTTCTTTGACTC  990
      || ||||||||||||| |||||||||| ||||| ||||||||||||||||
seq2  TGAAGATTCTAGCTAGTTATCAGAATCAATTTC-TATTCTTCTTTGACTC  998

seq1  ACTGAG-AGATGT-GCACAT-AATAAGCACTTGGTTTTTATTGAAGAGAA  1037
      |||||| |||||| |||||| |||| |||||||||||||  |||||||||
seq2  ACTGAGAAGATGTGGCACATAAATAGGCACTTGGTTTTTTATGAAGAGAA  1048

seq1  G-AGTG-ATCTAATTTGTGTAACAGAAAGATGAATGGTAGACTTATGTAT  1085
      | |||| |||||||| ||||||||||||||| ||| |||||||||||| |
seq2  GAAGTGAATCTAATTGGTGTAACAGAAAGATTAAT-GTAGACTTATGT-T  1096

seq1  AAAAGGGATTGCCAAAGA  1103
      |||| |||||||| ||||
seq2  AAAAAGGATTGCCCAAGA  1114


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