BAC Information

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BAC

Clone NameB6Ng01-100O09
Chromosome8 (Build37)9 (Build37)
Map Location 109,397,586 - 109,397,68157,458,819 - 57,459,819
singlet/doubletsingletsinglet
Overlap geneHas3
Upstream geneNutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7
Downstream gene5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100O09.bB6Ng01-100O09.g
ACCDH910259DH910260
length792996
definitionDH910259|Mus musculus domesticus DNA, BAC clone: B6Ng01-100O09, 5' end.DH910260|Mus musculus domesticus DNA, BAC clone: B6Ng01-100O09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,397,586 - 109,397,681)(57,458,819 - 57,459,819)
sequence
gaattcccctaactgacaataaaagctgggcctgggagtccactatgcat
ctccgttcccaaatggggagacccctgcatgcaggacattccgttgaagt
gtttagttctttgcttttgcatactctttcagtccagggtatcatttttt
ggcaattcttggaccctaacagtcttgggtttctattgctgtgaagaagc
accatgaccaactggagaggaaagggtttattcagctaccacttccactt
cactgttcatcgtgaaaggaagtcagggaaggaactcaaaccgggaagga
acctgaaggcaggagctgatgcacaggccagtgccgctctctgacttgtt
cctcatggcttgctcagcctgctttctcatagaactcaggacaaccagcc
aaggaatggcaccacccatgggctggatcctcccacgatcgattactaat
taagacgatgccctacaagcttgcctacagcctgatctcatgaaggcatt
ttctcaactgaggctccttgctttctgatgactctagcttgtgacaagtt
gagataaaactagccagcacaactgatcccttgtcatcttgacacacaaa
cacatcattgttaagccatgactttttcctgttttgttttgttttgtttt
gtttttcgagacagggtttctctgtgtagccctggctgacctggaactca
ctttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcct
cccaagtgctgggattaaaggtgtgtgccaccactgcccagc
gaattcagcgtggctcagggtaactcacccagcctccctcaggccggact
tggactgtagaccccagctgctgtttccagtgcttctcagcctgggccat
ctgcctggagagagcctggagggcctgtaggatctggctttgtctgccca
gcgtatcctccaggttaaagaacctttcacctgggagttggggcaaaaag
gttgcttgggtggggcagaaaaatcctgttttgtggtgaagcaggaagag
ccaaggattcttcttctaagacctcccctggaaaatgggtctcaggggac
cagcaagcaggatgggtgacagaaaagcgtttgtcagggaaacctgacaa
tgtaagcttgatcctcaagtccccagatcccacaccatataaaggtggaa
ggagagaatagatttcacagtcatcctctcactgccacacaaatgctgtg
gcacacacacacatagcacacacacacacacacacacacacacacacaca
cacacacagagagagagagagagagagagagagagagagagagagagaga
gagagaatgtgtctggggtgagggtgtcagaagggaatgggtcagaaggc
tcagcccaggttttgcttagagacagcctccttgggtctttacttctcca
ctggctactgtgcttctggttcaaaggacggtgttctacagccctacaat
gtcctatggccctacctgcctgttcctgggcacttaccttcttccctggg
ctttgggattcagtggtggtatgctagccctctctggtgcccagggccag
cccttgcccttcagttcttccagcttcctggccaggagcaactgatcctt
tctccatgaatggttggggggttttctgaagaggaagagaaaacccaagc
aaatgcttgggagtatgtgagggagcctccccggggaccctgggagccag
tcttcctcctcagcctaatatcacggacttaaggaggaacccacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109397586_109397681
seq2: B6Ng01-100O09.b_744_839 (reverse)

seq1  GCTGGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAG  50
      |||||||||||||||  ||| |||||||||||||||||||||||||||||
seq2  GCTGGGCAGTGGTGGCACACACCTTTAATCCCAGCACTTGGGAGGCAGAG  50

seq1  GCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAG  96
      ||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAG  96

seq1: chr9_57458819_57459819
seq2: B6Ng01-100O09.g_68_1063

seq1  GAATTCAGCGTGGCTCAGGGTAACTCACCCAGCCTCCCTCAGGCCGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCGTGGCTCAGGGTAACTCACCCAGCCTCCCTCAGGCCGGACT  50

seq1  TGGACTGTAGACCCCAGCTGCTGTTTCCAGTGCTTCTCAGCCTGGGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGTAGACCCCAGCTGCTGTTTCCAGTGCTTCTCAGCCTGGGCCAT  100

seq1  CTGCCTGGAGAGAGCCTGGAGGGCCTGTAGGATCTGGCTTTGTCTGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGAGAGAGCCTGGAGGGCCTGTAGGATCTGGCTTTGTCTGCCCA  150

seq1  GCGTATCCTCCAGGTTAAAGAACCTTTCACCTGGGAGTTGGGGCAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTATCCTCCAGGTTAAAGAACCTTTCACCTGGGAGTTGGGGCAAAAAG  200

seq1  GTTGCTTGGGTGGGGCAGAAAAATCCTGTTTTGTGGTGAAGCAGGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTGGGTGGGGCAGAAAAATCCTGTTTTGTGGTGAAGCAGGAAGAG  250

seq1  CCAAGGATTCTTCTTCTAAGACCTCCCCTGGAAAATGGGTCTCAGGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATTCTTCTTCTAAGACCTCCCCTGGAAAATGGGTCTCAGGGGAC  300

seq1  CAGCAAGCAGGATGGGTGACAGAAAAGCGTTTGTCAGGGAAACCTGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCAGGATGGGTGACAGAAAAGCGTTTGTCAGGGAAACCTGACAA  350

seq1  TGTAAGCTTGATCCTCAAGTCCCCAGATCCCACACCATATAAAGGTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCTTGATCCTCAAGTCCCCAGATCCCACACCATATAAAGGTGGAA  400

seq1  GGAGAGAATAGATTTCACAGTCATCCTCTCACTGCCACACAAATGCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAATAGATTTCACAGTCATCCTCTCACTGCCACACAAATGCTGTG  450

seq1  GCACACACACACATAGCACACACACACACACACACACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACACATAGCACACACACACACACACACACACACACACACACA  500

seq1  CACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  550

seq1  GAGAGAATGTGTCTGGGGTGAGGGTGTCAGAAGGGAATGGGTCAGAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATGTGTCTGGGGTGAGGGTGTCAGAAGGGAATGGGTCAGAAGGC  600

seq1  TCAGCCCAGGTTTTGCTTAGAGACAGCCTCCTTGGGTCTTTACTTCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCAGGTTTTGCTTAGAGACAGCCTCCTTGGGTCTTTACTTCTCCA  650

seq1  CTGGCTACTGTGCTTCTGGTTCAAAGGACGGTGTTCTACAGCCCTACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTACTGTGCTTCTGGTTCAAAGGACGGTGTTCTACAGCCCTACAAT  700

seq1  GTCCTATGGCCCTACCTGCCTGTTCCTGGGCACTTACCTTCTT-CCTGGG  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCCTATGGCCCTACCTGCCTGTTCCTGGGCACTTACCTTCTTCCCTGGG  750

seq1  CTTTGGGATTCAGTGGTGGTATGCTAG-CCTCTCTGGTGCCCAGGGCCAG  798
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTGGGATTCAGTGGTGGTATGCTAGCCCTCTCTGGTGCCCAGGGCCAG  800

seq1  -CCTTG-CCTTCAGTTCTTCCAGCTTCCTGGCCAGGAGCAACTGATCC-T  845
       ||||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  CCCTTGCCCTTCAGTTCTTCCAGCTTCCTGGCCAGGAGCAACTGATCCTT  850

seq1  TCTCCATGAATGGCTGGGGGGTTTCCTGGAAGAGGAAGAGAAAAACCCAA  895
      ||||||||||||| |||||||||| || |||||||||||| |||||||||
seq2  TCTCCATGAATGGTTGGGGGGTTTTCT-GAAGAGGAAGAG-AAAACCCAA  898

seq1  AGGCAAATGCATGGGAGTACTGTGAGGGGCAGCCTCCCCGCGGACCCTGG  945
        |||||||| |||||||| ||||||||  |||||||||| |||||||||
seq2  --GCAAATGCTTGGGAGTA-TGTGAGGG--AGCCTCCCCGGGGACCCTGG  943

seq1  GAGCCCAGTCTTCCTCCCCAGCCATATACTCACCGGGAC-TAAGGAGGAA  994
      ||| ||||||||||||| |||||  ||| ||||  |||| ||||||||||
seq2  GAG-CCAGTCTTCCTCCTCAGCCTAATA-TCAC--GGACTTAAGGAGGAA  989

seq1  CCCACAG  1001
      |||||||
seq2  CCCACAG  996