BAC Information

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BAC

Clone NameB6Ng01-101D17
Chromosome2 (Build37)8 (Build37)
Map Location 109,679,746 - 109,680,25991,233,358 - 91,234,500
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043423, LOC623031, Mett5d1, Kif18a, Bdnf, LOC100043427
Downstream geneLin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101D17.bB6Ng01-101D17.g
ACCDH910487DH910488
length5621,120
definitionDH910487|Mus musculus domesticus DNA, BAC clone: B6Ng01-101D17, 5' end.DH910488|Mus musculus domesticus DNA, BAC clone: B6Ng01-101D17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,679,746 - 109,680,259)(91,233,358 - 91,234,500)
sequence
gaattccccacactttgaggcacaggatgcaaggacctggaagctggaac
tgccagctctctatggagcatgctcactaaccatgcagcccagagggata
caaagctgagaaatgcatgcaaaagatagtgtgccaggagttacagagac
aaaatttggagctgtgacgaaaggatggaccatctagtgattgccatatc
cagggatccatcccataatcagcttccaaacgctgacaccattgcataca
ctagcaagattttgctgaaaggacccagatatagctgtctcttgtgagac
tatgccggggtctaacaaacacagaagtggatgctcaccgtcagctattg
gatggatcacagggcccccaatggaggagctagagaaagtacccaagaag
ctaaagggatctgcaatcctataggtggaacaacaatatgaactaaccag
taccccggagctcttgtctctagctgcatatgtatcaaaagatggcctag
tcggccatcactggaaagagaggcccattagacttgcaaactttatatgc
cccagtacaggg
gaattctggagtaacttaccattctgctatagaaagtcatacagtaattc
agatgagcaaagtgtccaaggatataaatgtgtgattaacttttaagggt
aggtttctgagttaaataatgcattcctagtgaattttcatatgcaaaca
atgtcactttaaacctcaggtggtgttattaatacagattaaagtatgaa
aaatactttaaactatttttctgtgtgttttctataacattattattgtt
gttgttattataaaacctagttactttagcagctatttctaatataacct
ttcttttgggcaaagtagttaaaggttctcaatgtaaaataatttagaag
attcttctgtaagaaatggagatgttcatatttacatttaattgaggagg
gcttaaaggcttcctttgtatgtcatttctaggataaccctattggcaac
tgggatggaaggtttgatggagtacagctctgtagttttgcaagtgttga
aagtacaattctcctgcacatcaatgacatcatcccaggtatgtctcctt
tatgtattcagaagacagtttctaacgtgtgttttgttatgagaatggaa
atatattctttaagataggtcttttgaaattgggttttataaggcagaat
tgtcaataaatagaatatcctttatttacctcaaacaaaagcaataaagg
ttatttctaaaagtagtatttctaaaagtactgagtgaagtttataaatt
atctgttacattgttgtctcctagcattctaatagagaaaaaaaacccct
ttcttataattggaaaggtcaaaaatacaaaaactgctgcctgttggagc
aagagttgaaagtaggatcctgtaaagagaaattggttacctcatctaca
ctccacagtagattcaggattctgttaaatgatggctgaagttcttttgt
ttagatggcattatgatggatcatgctccatgacagtggtcagaacatta
catatttattatatatattattattattatcatatagaagtatatcagga
cgacagatatctcagtggtaaagcagttaacattattcgggatggaacca
aggcttaacgtgtggtacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_109679746_109680259
seq2: B6Ng01-101D17.b_94_609

seq1  GAACTGCCAGCTCTCT--------TGCTGTATATCTGAGCTG----GAGG  38
      ||||||||||||||||        ||||   || |   || |    ||||
seq2  GAACTGCCAGCTCTCTATGGAGCATGCTCACTAACCATGCAGCCCAGAGG  50

seq1  --TTCACTGTCTCTGAATAAAATCCTTTC-----CTACTTTGCCACTGTA  81
        | ||  |   ||||   |||| | | |      || | |||||     
seq2  GATACAAAG---CTGA--GAAATGCATGCAAAAGATAGTGTGCCAGGAGT  95

seq1  TACACTGATACA-----GTGGTGTGAATAAGGCTCCAAGAACCTAAAGAC  126
      ||||  || | |     | | |||||  || |     |  | |||  || 
seq2  TACAGAGACAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTAGTGAT  145

seq1  AGTCCAGATAGAGGGCACCATAACACAGTCATTGCACTTTTTAAATCCCA  176
       | ||| ||  ||||  ||||  || | |||  ||    ||  || | | 
seq2  TG-CCATATCCAGGGATCCATCCCATAATCA--GC----TTCCAAACGC-  187

seq1  TGTGCTCTTAGTGGAGTAAAGGAGTACCAAGGTCATAGTGACAGAAAATC  226
        ||     | || | ||    | || ||||   ||  || | ||||   
seq2  --TGACACCATTGCA-TA---CACTAGCAAG---ATTTTG-CTGAAA---  224

seq1  GGGCCTTAGGACTTCCCTATCACAATGTCAG---ATGGCTG---CTAGGA  270
      || ||    ||  |  || || |  ||| ||   ||| | |   |||  |
seq2  GGACC--CAGATATAGCTGTCTC-TTGTGAGACTATGCCGGGGTCTAACA  271

seq1  ---ACAGAAGTGGATGCTCACAGTCATCTATAGGATGGAACACAGGGCCC  317
         |||||||||||||||||| |||| |||| ||||||| ||||||||||
seq2  AACACAGAAGTGGATGCTCACCGTCAGCTATTGGATGGATCACAGGGCCC  321

seq1  CCAATGGAGGAGCTAGAGAAAGTACCCAAG-AGCTGAAGGGGTCTGTAAC  366
      |||||||||||||||||||||||||||||| |||| ||||| |||| || 
seq2  CCAATGGAGGAGCTAGAGAAAGTACCCAAGAAGCTAAAGGGATCTGCAAT  371

seq1  CCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCCTGGAGCTCG  416
      |||||||||||||||||||||||||||||||||||||||   ||||||| 
seq2  CCTATAGGTGGAACAACAATATGAACTAACCAGTACCCC---GGAGCTCT  418

seq1  TGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTTGGCCATCATTGA  466
      |||||||||||||||||||| || ||||||||||||| |||||||| || 
seq2  TGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGG  468

seq1  GAGGAAAGGCCCCTTGATCTTGCAAACTTTATATGCCCCAGTACAGGG  514
       | || |||||| ||   ||||||||||||||||||||||||||||||
seq2  AAAGAGAGGCCCATTAGACTTGCAAACTTTATATGCCCCAGTACAGGG  516

seq1: chr8_91233358_91234500
seq2: B6Ng01-101D17.g_68_1187

seq1  GAATTCTGGAGTAACTTACCATTCTGCTATAGAAAGTCATACAGTAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGTAACTTACCATTCTGCTATAGAAAGTCATACAGTAATTC  50

seq1  AGATGAGCAAAGTGTCCAAGGATATAAATGTGTGATTAACTTTTAAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGCAAAGTGTCCAAGGATATAAATGTGTGATTAACTTTTAAGGGT  100

seq1  AGGTTTCTGAGTTAAATAATGCATTCCTAGTGAATTTTCATATGCAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTGAGTTAAATAATGCATTCCTAGTGAATTTTCATATGCAAACA  150

seq1  ATGTCACTTTAAACCTCAGGTGGTGTTATTAATACAGATTAAAGTATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTTTAAACCTCAGGTGGTGTTATTAATACAGATTAAAGTATGAA  200

seq1  AAATACTTTAAACTATTTTTCTGTGTGTTTTCTATAACATTATTATTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTTAAACTATTTTTCTGTGTGTTTTCTATAACATTATTATTGTT  250

seq1  GTTGTTATTATAAAACCTAGTTACTTTAGCAGCTATTTCTAATATAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATTATAAAACCTAGTTACTTTAGCAGCTATTTCTAATATAACCT  300

seq1  TTCTTTTGGGCAAAGTAGTTAAAGGTTCTCAATGTAAAATAATTTAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGGGCAAAGTAGTTAAAGGTTCTCAATGTAAAATAATTTAGAAG  350

seq1  ATTCTTCTGTAAGAAATGGAGATGTTCATATTTACATTTAATTGAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTGTAAGAAATGGAGATGTTCATATTTACATTTAATTGAGGAGG  400

seq1  GCTTAAAGGCTTCCTTTGTATGTCATTTCTAGGATAACCCTATTGGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGGCTTCCTTTGTATGTCATTTCTAGGATAACCCTATTGGCAAC  450

seq1  TGGGATGGAAGGTTTGATGGAGTACAGCTCTGTAGTTTTGCAAGTGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGAAGGTTTGATGGAGTACAGCTCTGTAGTTTTGCAAGTGTTGA  500

seq1  AAGTACAATTCTCCTGCACATCAATGACATCATCCCAGGTATGTCTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAATTCTCCTGCACATCAATGACATCATCCCAGGTATGTCTCCTT  550

seq1  TATGTATTCAGAAGACAGTTTCTAACGTGTGTTTTGTTATGAGAATGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTCAGAAGACAGTTTCTAACGTGTGTTTTGTTATGAGAATGGAA  600

seq1  ATATATTCTTTAAGATAGGTCTTTTGAAATTGGGTTTTATAAGGCAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCTTTAAGATAGGTCTTTTGAAATTGGGTTTTATAAGGCAGAAT  650

seq1  TGTCAATAAATAGAATATCCTTTATTTACCTCAAACAAAAGCAATAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATAAATAGAATATCCTTTATTTACCTCAAACAAAAGCAATAAAGG  700

seq1  TTATTTCTAAAAGTAGTATTTCTAAAAGTACTGAGTGAAGTTTATAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTAAAAGTAGTATTTCTAAAAGTACTGAGTGAAGTTTATAAATT  750

seq1  ATCTGTTACATTGTTGTCTCCTAGGCATTCTAATAGAGAAAAAAAACCCC  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCTGTTACATTGTTGTCTCCTA-GCATTCTAATAGAGAAAAAAAACCCC  799

seq1  TTTCTTATAATTGGAAGGTTCAAAAATACAAAAACTGCTGCCTGTTGGAG  850
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  TTTCTTATAATTGGAAAGGTCAAAAATACAAAAACTGCTGCCTGTTGGAG  849

seq1  CAAGAGTTGAAAGTAGGATCCTGTAAAGAGAAATTGGTTACCTCATCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTGAAAGTAGGATCCTGTAAAGAGAAATTGGTTACCTCATCTAC  899

seq1  ACTCCACAGTAGATTCAGGATTCTTGTTAAATGATGGCTGAAGTTCTTTT  950
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  ACTCCACAGTAGATTCAGGATTC-TGTTAAATGATGGCTGAAGTTC-TTT  947

seq1  TGTTTTAAGATGGCATTATGATGGATCATGCTCCATGACAGTGGTCAGAA  1000
      |||||  ||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTTT--AGATGGCATTATGATGGATCATGCTCCATGACAGTGGTCAG-A  994

seq1  ACATTACATAATTTTATTATATATTATTATTATATATATCATTATAGAAG  1050
      |||||||||| || |  ||||||||||||||||   ||||| ||||||||
seq2  ACATTACATATTTATTATATATATTATTATTAT---TATCA-TATAGAAG  1040

seq1  TAATAATCAGGACGAACAAGATATCTCAGTGGGTAAAGGCAGTTAACATT  1100
      ||   ||||||||||   |||||||||||| |||||| |||||||||| |
seq2  TA--TATCAGGACGA--CAGATATCTCAGT-GGTAAA-GCAGTTAACA-T  1083

seq1  TATTTCTGGGGATGGAACCCAGAGTCTTACACGTGTGGTACAG  1143
      |||   | |||||||||||   || |||| |||||||||||||
seq2  TAT---TCGGGATGGAACC--AAGGCTTA-ACGTGTGGTACAG  1120