BAC Information

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BAC

Clone NameB6Ng01-101H23
Chromosome8 (Build37)
Map Location 95,017,137 - 95,195,810
singlet/doubletdoublet
Overlap genenone
Upstream geneAJ237917, LOC100041254, LOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
Downstream geneIrx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101H23.bB6Ng01-101H23.g
ACCDH910663DH910664
length1,0701,100
definitionDH910663|Mus musculus domesticus DNA, BAC clone: B6Ng01-101H23, 5' end.DH910664|Mus musculus domesticus DNA, BAC clone: B6Ng01-101H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,017,137 - 95,018,190)(95,194,717 - 95,195,810)
sequence
gaattcttagaatccattcctcacatggagggcaggggcagtaaaatctg
aattccacagccaagtgggcagcaaaggatcctgggaacctctaggcttc
ccacctctgtctgccttgcatctgccctgggccagagggtgcagcttcag
catccaagccattcggtggcgtctccctccctgaagcagcagatggatgg
tgccctcagcaccccacacagcactccactagagcctttagacctggaga
tgagcttcaagtttctgtccctgagagcaggcaggaagaaaggaggagaa
atggagacagcaggggtcagtatttgttcagtggaggccatggcagacca
gtatggaggactggctgtctttaggcacgatgcccagtacctctcagaca
cataacaccagagccacagactgctctggccctggccccagtaggggaag
gcagcactgaagcctcccaggaatccacacggctgcttaggaaaggtccc
tgctttgcaccacgttgacaatttgccagctgttgttttgtagcaacaga
atctttcctctgataattctctttgaagttttaaattaaggtgtatactt
ttgtgtttggtggaattgttataaacatgggattgggcagatagccccag
cagagttacagacaagttccatctttcccccaatctccaccccagcaacc
taccttgtggttatctctgccagcaactaccagtctgttgtcttttcctt
agagctcagccttttccaggatgtttctgtaaatgaaaacacgcacaatg
caggcactgcattgaccacggtgtacacgagagccaactgtgctgtagag
cacattgggtagcttgcagctccttacatgagcaagcagacatccttaca
gagaaaggtcccattgggttcatcggttcccttaggaggattgaaagttg
aagtgaagaagagtgcccaactgctcctactttaggtcgtttatcaggtg
aagttgctgttgagcactgcttacgaaagttgttgcatggtgtttgtcct
tttttggtagtaggaattgg
gaattctatagagtttgctttcggcttcctctctctttccggattttcac
acctatagcctggtgctctgggctcctctatcatgttagcttttcattgc
tttgctcaatgatgattaatttattttttgggggaaaaatccccaattgt
atacgggtgctcatagactcttattgaagccagtaaataaaaccgtcaaa
tagagatgcccccccccacaccctgttatattggagggagtcaacaaaac
tactcaatgtcttttgaaaaacaacgatattggttcttttgtggtcttgt
acaatgtgtctgctgatttttctagctgctcattaaaactaataggaagc
aaaactgcacagaggcccgtttggaccacagagaacgctaatcctcagtg
ttcatttgaagtttatattgctccttgtcaagcgcactgatgatcttgaa
caagtggagtaaaagctgtgtctttgaaaaatagcttgaggaacaccacc
ttgaatggggatggggggaccaaccaaaccgaggaaagccgaaccatcct
gtagtgtttgagatttaaaactgcccttgatttcccagctatttatacag
atcaccagagcttatggggaggcaaagaataacttcaaattgcagataca
gtgagtgagttcaggcacataagggtagagtagaaaccatgctaaaatac
attaaaaaaaaaaaaaggatggtgtatttttagtgactgttttttgaact
gagaagaatgaaatttccctccaccctatgcatgaattgaacaagtgtat
ctggatagatgctgcatctggacagatgcatccataatttatactgatca
gtcaccgcaggtctcccgagtaaagccgaaatgaacaattaattgttttg
acggaaggtagtgttcacagcattcttgatagagaaaacacagtgagtct
ctgccttttctgaatacatatttgtgacaggaatgctggcatcagaaggg
gagagaaaaggcagcaattcccaggcgagggtgtcggtgcacctcctcct
gaaggggcaagaagaaaggatttacctctatgaatagagtatgtaatgcg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_95017137_95018190
seq2: B6Ng01-101H23.b_47_1116

seq1  GAATTCTTAGAATCCATTCCTCACATGGAGGGCAGGGGCAGTAAAATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAATCCATTCCTCACATGGAGGGCAGGGGCAGTAAAATCTG  50

seq1  AATTCCACAGCCAAGTGGGCAGCAAAGGATCCTGGGAACCTCTAGGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCACAGCCAAGTGGGCAGCAAAGGATCCTGGGAACCTCTAGGCTTC  100

seq1  CCACCTCTGTCTGCCTTGCATCTGCCCTGGGCCAGAGGGTGCAGCTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTGTCTGCCTTGCATCTGCCCTGGGCCAGAGGGTGCAGCTTCAG  150

seq1  CATCCAAGCCATTCGGTGGCGTCTCCCTCCCTGAAGCAGCAGATGGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGCCATTCGGTGGCGTCTCCCTCCCTGAAGCAGCAGATGGATGG  200

seq1  TGCCCTCAGCACCCCACACAGCACTCCACTAGAGCCTTTAGACCTGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAGCACCCCACACAGCACTCCACTAGAGCCTTTAGACCTGGAGA  250

seq1  TGAGCTTCAAGTTTCTGTCCCTGAGAGCAGGCAGGAAGAAAGGAGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCAAGTTTCTGTCCCTGAGAGCAGGCAGGAAGAAAGGAGGAGAA  300

seq1  ATGGAGACAGCAGGGGTCAGTATTTGTTCAGTGGAGGCCATGGCAGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACAGCAGGGGTCAGTATTTGTTCAGTGGAGGCCATGGCAGACCA  350

seq1  GTATGGAGGACTGGCTGTCTTTAGGCACGATGCCCAGTACCTCTCAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAGGACTGGCTGTCTTTAGGCACGATGCCCAGTACCTCTCAGACA  400

seq1  CATAACACCAGAGCCACAGACTGCTCTGGCCCTGGCCCCAGTAGGGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACACCAGAGCCACAGACTGCTCTGGCCCTGGCCCCAGTAGGGGAAG  450

seq1  GCAGCACTGAAGCCTCCCAGGAATCCACACGGCTGCTTAGGAAAGGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACTGAAGCCTCCCAGGAATCCACACGGCTGCTTAGGAAAGGTCCC  500

seq1  TGCTTTGCACCACGTTGACAATTTGCCAGCTGTTGTTTTGTAGCAACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCACCACGTTGACAATTTGCCAGCTGTTGTTTTGTAGCAACAGA  550

seq1  ATCTTTCCTCTGATAATTCTCTTTGAAGTTTTAAATTAAGGTGTATACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCTCTGATAATTCTCTTTGAAGTTTTAAATTAAGGTGTATACTT  600

seq1  TTGTGTTTGGTGGAATTGTTATAAACATGGGATTGGGCAGATAGCCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTGGTGGAATTGTTATAAACATGGGATTGGGCAGATAGCCCCAG  650

seq1  CAGAGTTACAGACAAGTTCCATC-TTCCCCCAATCTCCACCCCAGCAACC  699
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGAGTTACAGACAAGTTCCATCTTTCCCCCAATCTCCACCCCAGCAACC  700

seq1  TACCTTGTGGTTATCTCTGCCAGCAACTACCAGTCTGTTGTC-TTTCCTT  748
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TACCTTGTGGTTATCTCTGCCAGCAACTACCAGTCTGTTGTCTTTTCCTT  750

seq1  AGAGCTCAGCCTTTTCCAGGATG-TTCTGTAAATGAAAACACGCACAATG  797
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGAGCTCAGCCTTTTCCAGGATGTTTCTGTAAATGAAAACACGCACAATG  800

seq1  CAGGCACTGCATTGACCACGGTGTACACGAGAGCCAACTGTGCTGTAGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTGCATTGACCACGGTGTACACGAGAGCCAACTGTGCTGTAGAG  850

seq1  CACATT-GGTAGCTTGCAGCTCCTTACATGAGCAAGCAGACATCCTTACA  896
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGGTAGCTTGCAGCTCCTTACATGAGCAAGCAGACATCCTTACA  900

seq1  GAG-AAGGTCCCATT-GGTTCATCGGCTCCC-TAGGAGGAATGAA--GTG  941
      ||| ||||||||||| |||||||||| |||| |||||||| ||||   ||
seq2  GAGAAAGGTCCCATTGGGTTCATCGGTTCCCTTAGGAGGATTGAAAGTTG  950

seq1  AAGTGAAGGAGAAGTGCCC-ACTGCTTCTACTTTAGGCCG-TTATCA-GT  988
      |||||||| || ||||||| |||||| |||||||||| || |||||| ||
seq2  AAGTGAAGAAG-AGTGCCCAACTGCTCCTACTTTAGGTCGTTTATCAGGT  999

seq1  GAAGTTGCTG-TGAGCACT-CTTACACAAGTTG-TGCAT-GTGTTTGTCC  1034
      |||||||||| |||||||| |||||  |||||| ||||| ||||||||||
seq2  GAAGTTGCTGTTGAGCACTGCTTACGAAAGTTGTTGCATGGTGTTTGTCC  1049

seq1  TTTTTGGTAAGTAGG-ATTGG  1054
      ||||| |  |||||| |||||
seq2  TTTTTTGGTAGTAGGAATTGG  1070

seq1: chr8_95194717_95195810
seq2: B6Ng01-101H23.g_68_1167 (reverse)

seq1  CGCATTTCATACTCTATCTCTAAGAAGTTAATCCTTTCTCTTTGCCCCTT  50
      |||||| |||||||||| ||  ||| || ||||||||||  |||||||||
seq2  CGCATTACATACTCTAT-TCATAGAGGTAAATCCTTTCTTCTTGCCCCTT  49

seq1  CCAGAGGAGCTGCACCG-CACCCTCGCCTGGGAATTGCTGCCTTTTTCTC  99
      |  |||||| ||||||| |||||||||||||||||||||||| |||||||
seq2  CAGGAGGAGGTGCACCGACACCCTCGCCTGGGAATTGCTGCC-TTTTCTC  98

seq1  TTCCCCTTCTGATGCCAGCCTTTCTGTTCAC-AATATGTATTCAGGCAAG  148
       |||||||||||||||||| || ||| |||| |||||||||||||  |||
seq2  -TCCCCTTCTGATGCCAGCATTCCTG-TCACAAATATGTATTCAGAAAAG  146

seq1  GCAGGGACTCACTGTG-TTTCTCTATCA--GATGCTGTGTACACTA-CTT  194
      |||| ||||||||||| |||||||||||   |||||||| |||||| |||
seq2  GCAGAGACTCACTGTGTTTTCTCTATCAAGAATGCTGTGAACACTACCTT  196

seq1  CCGTCAAAACAATT-AGTGTTCATTTCGGCTTTACTCGGGGAGACCTGCG  243
      |||||||||||||| | |||||||||||||||||||| ||||||||||||
seq2  CCGTCAAAACAATTAATTGTTCATTTCGGCTTTACTC-GGGAGACCTGCG  245

seq1  GTGACTGATCAGTATAAATTATGGATGCATCTGTCCAGATGCAGCATCTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGATCAGTATAAATTATGGATGCATCTGTCCAGATGCAGCATCTA  295

seq1  TCCAGATACACTTGTTC-ATTCATGCATAGGGTGGA-GGAAATTTCATTC  341
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  TCCAGATACACTTGTTCAATTCATGCATAGGGTGGAGGGAAATTTCATTC  345

seq1  TTCTCAGTTC-AAAAACAGTCACTAAAAATACACCATCC-TTTTTTTTTT  389
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TTCTCAGTTCAAAAAACAGTCACTAAAAATACACCATCCTTTTTTTTTTT  395

seq1  TTAATGTATTTTAGCATGGTTTCTACTCTACCCTTATGTGCCTGAACTCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTATTTTAGCATGGTTTCTACTCTACCCTTATGTGCCTGAACTCA  445

seq1  CTCACTGTATCTGCAATTTGAAGTTATTCTTTGCCTCCCCATAAGCTCTG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTATCTGCAATTTGAAGTTATTCTTTGCCTCCCCATAAGCTCTG  495

seq1  GTGATCTGTATAAATAGCTGGGAAATCAAGGGCAGTTTTAAATCTCAAAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTGTATAAATAGCTGGGAAATCAAGGGCAGTTTTAAATCTCAAAC  545

seq1  ACTACAGGATGGTTCGGCTTTCCTCGGTTTGGTTGGTCCCCCCATCCCCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGGATGGTTCGGCTTTCCTCGGTTTGGTTGGTCCCCCCATCCCCA  595

seq1  TTCAAGGTGGTGTTCCTCAAGCTATTTTTCAAAGACACAGCTTTTACTCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTGGTGTTCCTCAAGCTATTTTTCAAAGACACAGCTTTTACTCC  645

seq1  ACTTGTTCAAGATCATCAGTGCGCTTGACAAGGAGCAATATAAACTTCAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTCAAGATCATCAGTGCGCTTGACAAGGAGCAATATAAACTTCAA  695

seq1  ATGAACACTGAGGATTAGCGTTCTCTGTGGTCCAAACGGGCCTCTGTGCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACTGAGGATTAGCGTTCTCTGTGGTCCAAACGGGCCTCTGTGCA  745

seq1  GTTTTGCTTCCTATTAGTTTTAATGAGCAGCTAGAAAAATCAGCAGACAC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTTCCTATTAGTTTTAATGAGCAGCTAGAAAAATCAGCAGACAC  795

seq1  ATTGTACAAGACCACAAAAGAACCAATATCGTTGTTTTTCAAAAGACATT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACAAGACCACAAAAGAACCAATATCGTTGTTTTTCAAAAGACATT  845

seq1  GAGTAGTTTTGTTGACTCCCTCCAATATAACAGGGTGTGGGGGGGGGCAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTTTGTTGACTCCCTCCAATATAACAGGGTGTGGGGGGGGGCAT  895

seq1  CTCTATTTGACGGTTTTATTTACTGGCTTCAATAAGAGTCTATGAGCACC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTGACGGTTTTATTTACTGGCTTCAATAAGAGTCTATGAGCACC  945

seq1  CGTATACAATTGGGGATTTTTCCCCCAAAAAATAAATTAATCATCATTGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATACAATTGGGGATTTTTCCCCCAAAAAATAAATTAATCATCATTGA  995

seq1  GCAAAGCAATGAAAAGCTAACATGATAGAGGAGCCCAGAGCACCAGGCTA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCAATGAAAAGCTAACATGATAGAGGAGCCCAGAGCACCAGGCTA  1045

seq1  TAGGTGTGAAAATCCGGAAAGAGAGAGGAAGCCGAAAGCAAACTCTATAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGAAAATCCGGAAAGAGAGAGGAAGCCGAAAGCAAACTCTATAG  1095

seq1  AATTC  1094
      |||||
seq2  AATTC  1100