BAC Information

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BAC

Clone NameB6Ng01-101N05
Chromosome8 (Build37)
Map Location 18,511,584 - 18,626,318
singlet/doubletdoublet
Overlap geneMcph1
Upstream geneCsmd1, LOC665638, LOC100040466
Downstream geneAngpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101N05.bB6Ng01-101N05.g
ACCDH910893DH910894
length1,100805
definitionDH910893|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N05, 5' end.DH910894|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,625,203 - 18,626,318)(18,511,584 - 18,512,386)
sequence
gaattccaaacatacaaccacagaaactatcctgaagctggcaaaatcac
acacctcctagagcacaaggcaagtcacagtcagctgctgtggataacct
gaagcagccccgtatcctacagccggggttaaaacaaaaacacattccta
taatatttctgtgtttttcaaagaaaccaaaatgtcaaaattgtcattat
agatgaggcattcattaaagagacagaattaagaaatgagattgctggag
ctggcaagatggctcagcaggtaagagcactgaccgttcttctgaaggtc
ctgagttcaaatcccagcaaccacatggtggctcacaaccacctgcaatg
agatctgacgccctcttttggtgcatctgaagtcagctacagtgtactta
tgtataataataaataaatcttaaaacaaacaaacaaacaaaaaaccaaa
agaaagaaacaagattgcttttctcctgtaatcctccccagatcaggatc
ccactgacttgatgagccgtgaggactatctgatggcccttgccagaggc
tctacccgtgactactccaagtgagaaggcatgtgctggagcctccttcc
tccccacctccctgtagctgtcaggcacacgggatgtggcttacctagag
ctgccttttgcctttgtagctcttcagccattttctcaaatttcttttga
agtcttttgtcattttctggtgttttaagaataaaatctttgggttgcat
acatttgtgctaggcaaaaaggttataaacattagtgagggtgtattgtt
ttcttttattgtttaaaagatttacttgttgttatgtgagtaaatgttga
cctgcatttatgcatatacatcaaatgaatggctggtgctgagaggccaa
agagggtgtcagattccccgaaaccatgtagttgcacgagaaactcagca
aagtcttgtgcaggagaatgaccctgactgccaagccatctctcagtccc
tacaactgctgactgttttaaacaagagagaaagcatttcatacagttgg
tacttaatgaattcaaaatttaaagaccttctatgagttgttcatacacg

gaattcagttcagacatggtctgttttccctgggctgcatggcactggac
tggtggtcatctcaggctatgtccgtggtccatggcaccaatctggtggt
cctcttgcttgacccttggcagctgaccctaccatatgtctctggtggga
aggtgtggacaatggtgaaatacccttctccctcctttgatcctcaccac
ctgtggcatgctgcagtcctggtcctagaatcctgagagcaggagatctg
gccctgtcgctcactagctgcagttgggtgagtgttgagagcttttggtg
ctacttataggaatttgacatttgtcactgagctcaagcaagtaagtagg
ctcaggtaagaacgtcagaaacagtgaccatggggctttgtttactgctt
tgtttaattactacttgtgtgatctctttgcttactctctacttgattac
tatcttgtgtgatctttttgtttgctacttggcttgattactttgtcttt
gatctaagaactgaccatgtatttttggatgtacctagaatgatataaaa
gcaggctggagagacatagagctgcttcagcttcagcactggctgggggt
cgggttatcattttgtctaattgtccttgtcttttcatcctcactcccct
ccctttgagatctggttgacggactgagcttggcttggtcaggaaagcaa
aaggggtacaagcttgctttctacccagcctgcctgagtgccccttagaa
tgggttgctatctcgggctcatttttgctagagtttctgggtataggcag
ggttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18625203_18626318
seq2: B6Ng01-101N05.b_48_1146 (reverse)

seq1  GTGTAATGAACAACTCATTAAGAAGTTCTTTTAATTTTTGATATCATTAA  50
      |||| |||||||||||||  ||||| || ||||| ||||||  |||||||
seq2  GTGT-ATGAACAACTCAT--AGAAGGTC-TTTAAATTTTGAATTCATTAA  46

seq1  AGTTACCAAAACTGTATGGAAATGGCTTTCTCTCTTGTTTTAAAAACAGT  100
         ||||  |||||||| ||||| ||||||||||||||||  ||||||||
seq2  --GTACC--AACTGTAT-GAAAT-GCTTTCTCTCTTGTTT--AAAACAGT  88

seq1  CAGCAGTTGTAGGGACTGGAGAGATGGCTTGGCAGTCAGGGTCATTTCTC  150
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  CAGCAGTTGTAGGGACT-GAGAGATGGCTTGGCAGTCAGGGTCA-TTCTC  136

seq1  TTGCACAAGACCTTGCTGAGTTTCTTCGTGGCACCTACATGGTTTCGGGG  200
       |||||||||| |||||||||||| |||| ||| ||||||||||||||||
seq2  CTGCACAAGACTTTGCTGAGTTTC-TCGT-GCAACTACATGGTTTCGGGG  184

seq1  AATCTGACACCCTCTTTTGGCCTCTCAGCACCAGCCATTCATGTGATGTA  250
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  AATCTGACACCCTC-TTTGGCCTCTCAGCACCAGCCATTCATTTGATGTA  233

seq1  TATGCATAAATGCAGGTCAACATTTACTCACATAACAACAAGTAAATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATAAATGCAGGTCAACATTTACTCACATAACAACAAGTAAATCTT  283

seq1  TTAAACAATAAAAGAAAACAATACACCCTCACTAATGTTTATAACCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAATAAAAGAAAACAATACACCCTCACTAATGTTTATAACCTTTT  333

seq1  TGCCTAGCACAAATGTATGCAACCCAAAGATTTTATTCTTAAAACACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGCACAAATGTATGCAACCCAAAGATTTTATTCTTAAAACACCAG  383

seq1  AAAATGACAAAAGACTTCAAAAGAAATTTGAGAAAATGGCTGAAGAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACAAAAGACTTCAAAAGAAATTTGAGAAAATGGCTGAAGAGCTA  433

seq1  CAAAGGCAAAAGGCAGCTCTAGGTAAGCCACATCCCGTGTGCCTGACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCAAAAGGCAGCTCTAGGTAAGCCACATCCCGTGTGCCTGACAGC  483

seq1  TACAGGGAGGTGGGGAGGAAGGAGGCTCCAGCACATGCCTTCTCACTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGAGGTGGGGAGGAAGGAGGCTCCAGCACATGCCTTCTCACTTGG  533

seq1  AGTAGTCACGGGTAGAGCCTCTGGCAAGGGCCATCAGATAGTCCTCACGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCACGGGTAGAGCCTCTGGCAAGGGCCATCAGATAGTCCTCACGG  583

seq1  CTCATCAAGTCAGTGGGATCCTGATCTGGGGAGGATTACAGGAGAAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAAGTCAGTGGGATCCTGATCTGGGGAGGATTACAGGAGAAAAGC  633

seq1  AATCTTGTTTCTTTCTTTTGGTTTTTTGTTTGTTTGTTTGTTTTAAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTTTCTTTCTTTTGGTTTTTTGTTTGTTTGTTTGTTTTAAGATT  683

seq1  TATTTATTATTATACATAAGTACACTGTAGCTGACTTCAGATGCACCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTATTATACATAAGTACACTGTAGCTGACTTCAGATGCACCAAA  733

seq1  AGAGGGCGTCAGATCTCATTGCAGGTGGTTGTGAGCCACCATGTGGTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCGTCAGATCTCATTGCAGGTGGTTGTGAGCCACCATGTGGTTGC  783

seq1  TGGGATTTGAACTCAGGACCTTCAGAAGAACGGTCAGTGCTCTTACCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTGAACTCAGGACCTTCAGAAGAACGGTCAGTGCTCTTACCTGC  833

seq1  TGAGCCATCTTGCCAGCTCCAGCAATCTCATTTCTTAATTCTGTCTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTTGCCAGCTCCAGCAATCTCATTTCTTAATTCTGTCTCTTT  883

seq1  AATGAATGCCTCATCTATAATGACAATTTTGACATTTTGGTTTCTTTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGCCTCATCTATAATGACAATTTTGACATTTTGGTTTCTTTGAA  933

seq1  AAACACAGAAATATTATAGGAATGTGTTTTTGTTTTAACCCCGGCTGTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGAAATATTATAGGAATGTGTTTTTGTTTTAACCCCGGCTGTAG  983

seq1  GATACGGGGCTGCTTCAGGTTATCCACAGCAGCTGACTGTGACTTGCCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGGGGCTGCTTCAGGTTATCCACAGCAGCTGACTGTGACTTGCCTT  1033

seq1  GTGCTCTAGGAGGTGTGTGATTTTGCCAGCTTCAGGATAGTTTCTGTGGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTAGGAGGTGTGTGATTTTGCCAGCTTCAGGATAGTTTCTGTGGT  1083

seq1  TGTATGTTTGGAATTC  1116
      ||||||||||||||||
seq2  TGTATGTTTGGAATTC  1099

seq1: chr8_18511584_18512386
seq2: B6Ng01-101N05.g_73_877

seq1  GAATTCAGCTCAGACATGGTCTGTTTTCCCTGGGCTGCATGGCACTGGAC  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCAGACATGGTCTGTTTTCCCTGGGCTGCATGGCACTGGAC  50

seq1  TGGTGGTCATCTCAGGCTATGTCCGTGGTCCATGGCACCAATCTGGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTCATCTCAGGCTATGTCCGTGGTCCATGGCACCAATCTGGTGGT  100

seq1  CCTCTTGCTTGACCCTTGGCAGCTGACCCTACCATATGTCTCTGGTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCTTGACCCTTGGCAGCTGACCCTACCATATGTCTCTGGTGGGA  150

seq1  AGGTGTGGACAATGGTGAAATACCCTTCTCCCTCCTTTGATCCTCACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGGACAATGGTGAAATACCCTTCTCCCTCCTTTGATCCTCACCAC  200

seq1  CTGTGGCATGCTGCAGTCCTGGTCCTAGAATCCTGAGAGCAGGAGATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCATGCTGCAGTCCTGGTCCTAGAATCCTGAGAGCAGGAGATCTG  250

seq1  GCCCTGTCGCTCACTAGCTGCAGTTGGGTGAGTGTTGAGAGCTTTTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTCGCTCACTAGCTGCAGTTGGGTGAGTGTTGAGAGCTTTTGGTG  300

seq1  CTACTTATAGGAATTTGACATTTGTCACTGAGCTCAAGCAAGTAAGTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTATAGGAATTTGACATTTGTCACTGAGCTCAAGCAAGTAAGTAGG  350

seq1  CTCAGGTAAGAACGTCAGAAACAGTGACCATGGGGCTTTGTTTACTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTAAGAACGTCAGAAACAGTGACCATGGGGCTTTGTTTACTGCTT  400

seq1  TGTTTAATTACTACTTGTGTGATCTCTTTGCTTACTCTCTACTTGATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATTACTACTTGTGTGATCTCTTTGCTTACTCTCTACTTGATTAC  450

seq1  TATCTTGTGTGATCTTTTTGTTTGCTACTTGGCTTGATTACTTTGTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGTGTGATCTTTTTGTTTGCTACTTGGCTTGATTACTTTGTCTTT  500

seq1  GATCTAAGAACTGACCATGTATTTTTGGATGTACCTAGAATGATATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAGAACTGACCATGTATTTTTGGATGTACCTAGAATGATATAAAA  550

seq1  GCAGGCTGGAGAGACATAGAGCTGCTTCAGCTTCAGCACTGGCT-GGGGT  599
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCAGGCTGGAGAGACATAGAGCTGCTTCAGCTTCAGCACTGGCTGGGGGT  600

seq1  CGGGTTATCATTTTGTCTAATTGTCCTTGTCTTTTCAATCCTCACT-CCC  648
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  CGGGTTATCATTTTGTCTAATTGTCCTTGTCTTTTC-ATCCTCACTCCCC  649

seq1  TCCC-TTGAGATCTGGTTGACGGACTGAGC-TGGCTTGGTCAGGAAAGC-  695
      |||| ||||||||||||||||||||||||| |||||||||||||||||| 
seq2  TCCCTTTGAGATCTGGTTGACGGACTGAGCTTGGCTTGGTCAGGAAAGCA  699

seq1  AAAGGGGTACAAGCTTGCTTCCTACCCAGCCTGCCTGAGTGGCCCCTTAG  745
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  AAAGGGGTACAAGCTTGCTTTCTACCCAGCCTGCCTGAGT-GCCCCTTAG  748

seq1  AA-GGGTTGTCTATCTCGGGCTCACTTTTGCTAGAGTCTCGTGGTCACAG  794
      || |||||| |||||||||||||| |||||||||||| || |||  | ||
seq2  AATGGGTTG-CTATCTCGGGCTCATTTTTGCTAGAGTTTC-TGGGTATAG  796

seq1  GCAGGGTTC  803
      |||||||||
seq2  GCAGGGTTC  805