BAC Information

Click to search

BAC

Clone NameB6Ng01-102C16
Chromosome8 (Build37)8 (Build37)
Map Location 94,266,885 - 94,267,56939,661,600 - 39,662,722
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneChd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628
Downstream geneIrx3, 4933436C20Rik, Irx5, Irx6, LOC100041325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102C16.bB6Ng01-102C16.g
ACCDH911136DH911137
length9601,115
definitionDH911136|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C16, 5' end.DH911137|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,266,885 - 94,267,569)(39,661,600 - 39,662,722)
sequence
gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccatgacccgcagttctggttccggaatgagggatcttccttgcg
ccggtgatggtaaccttcccaggttttctcgtcccaggtcttctcgtccc
aggtcttctcatcccgggtcttctcgtcccgtcccgagttttcttgtccc
gggtttttttcgtcccaggttctttcttcccgggttttctcgtcccggat
ttctcgtcccaggttttctcgtcccgggtttcggcaccaactcttgcatg
ctttctcacgaccggccaggaagaacacaacaaaccagaatcttctgcgg
caaaactttattgcttacatcttcaggagcaagagtgctaaactcaaaac
ccccaaaaacgaaagcgaaaccccgtccctaattaggagagttatccttc
gcctaggacgtatcactccctgattggctgcagcccatcggcccagttgt
catcacgggaaaggcagaacacatggcgggaaaactgcccctgcacgtgt
gcagattatgtttactacttagaacacagctgtcagcgccatcttataat
ggcaaatgtgagggcggctccccacaggtcagagttttgactttgggatg
gcaactccacacctcacttgatgcactgtctttctgctggaggtgggctc
tacaagttcctgctccccactgtaggacatttcatctaaggtccctccct
ttgagtcctgaaattcagtcctttccccatccaatacgtgattatattcc
ccctttcccttcaattccctcaatccctcccctcctcctgtgattgcttt
catctccctgcaagtgggactgaggcattctcacttgtgcccttcagctg
ttgacctttttaagttctttggactgtatctgggtatctgtatttttagc
tatatccact
gaattcataattcatgtaaaaataccttgatggaatctttgaattaaaaa
tagtgatggccatagggctataggtctagaaaatgaaagaaaaagaaatt
taaatttaggctctctggctaacaagtttggagtagaaagatgtgccatg
tagtggaggtgaggtggctatgatgataaaggtctccagagggagaatgg
gtctataaagaggtctaccttgagtccaaggagtcaaaggtacaacatga
ccatgtcatagcaacatctgacaatggacttgaagtgacttccagcccct
gattcctcactttacctgaaattattgaaatctataaacataagttggct
cctatctatgaccacttggtatctaagattaagaaaaaacaataagggtt
tatatacaataagtgggacaagcaggtcagagatgtgaaaatgttgactt
atttattggtaagatatgcataagagaatttaccatcttgaactacatta
tccactgagcagacagacttttatcatcttgtaaaataaaaactctaata
tttatatctctgagaattgagaaatttatacgaagcacatactaatacaa
tcatacatgtacctcttttggttacttattttacttgatataaatactgt
taatgtaacaaggaacagaattttcttcctttttgtgacagaatagttct
ttctcataattaggatgtggttttgttatgtcatttgcctatcaatgtgg
caatttcataacttctacttctcggctagtaattgtgaacaattctatta
gaaacacagtactgaaatcaaagtcctgagttgactgactcatcaaattc
ttggttttttagaaccccctattatgaaaaagagcaatttaaccatgtga
aaatacatgcaatggtttttctgttatatacaacattccttagcttgttt
acatttggggaaactttttgatgcaaatactagaccttgaacagcactct
acttaaacataagcagaagtctcagcttagtatgctataccacccttcag
attttttctactgttcacctgagaagtagtctgccctgactgtaacaagc
aaaggacattcttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_94266885_94267569
seq2: B6Ng01-102C16.b_48_673

seq1  GAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAAC-CTT  49
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTT  50

seq1  TATGACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCG  99
       || ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCATGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCG  100

seq1  CCAGTGATGGTAACCGTCCCGTCCCGAGTTTTCTTGTCCCGGGTTTTTTC  149
      || ||||||||||     || ||||  ||||||| ||||| ||| || ||
seq2  CCGGTGATGGTAA-----CCTTCCCAGGTTTTCTCGTCCCAGGTCTTCTC  145

seq1  GTCCCAGGTCTTCTCGTCCCAGGTCTTCT-----CGTCCCAGGTCTTCTC  194
      ||||||||||||||| |||| ||||||||     ||||||  || |||| 
seq2  GTCCCAGGTCTTCTCATCCCGGGTCTTCTCGTCCCGTCCCGAGTTTTCTT  195

seq1  GTCCCAGG-TTTTCTCGTCCCAGGTCTTCTCGTCCCGGGTTTTCTCGTCC  243
      ||||| || |||| |||||||||||  | || ||||||||||||||||||
seq2  GTCCCGGGTTTTTTTCGTCCCAGGTTCTTTCTTCCCGGGTTTTCTCGTCC  245

seq1  CGTCCCGAGTTTTCGGCACCAACTCTTACCCACGTCTCACTCTTCCCGGG  293
      ||    || || |||             |||| || |  ||| |||||||
seq2  CG----GATTTCTCG------------TCCCAGGT-TTTCTCGTCCCGGG  278

seq1  TTTCGGCACCAACTCTTACCCGCATTCTCGCGACCGGCCAGGAAGAACGC  343
      ||||||||||||||||| |  || ||||| |||||||||||||||||| |
seq2  TTTCGGCACCAACTCTTGCATGCTTTCTCACGACCGGCCAGGAAGAACAC  328

seq1  AACAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACATCTTCAGG  393
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  AACAAACCAGAATCTTCTGCGGCAAAA-CTTTATTGCTTACATCTTCAGG  377

seq1  AGCTAGAGAGCAAGAGCAAGAGAGAGAAAAAGCAAGAACAAGAGAGAGAA  443
      ||| |||| ||                |||  |||             ||
seq2  AGCAAGAGTGC---------------TAAACTCAA-------------AA  399

seq1  AAAGCAAGAACAAGAGAGAGAAAAAGAATGGCAAAACCCCGTCCCTTTTA  493
          ||| |||        ||||       || |||||||||||||  | 
seq2  CCCCCAAAAAC--------GAAA-------GCGAAACCCCGTCCCTAATT  434

seq1  AGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCAGC  543
      |||||| ||||||| |||||||||||||| ||||||||||||||||||||
seq2  AGGAGAGTTATCCTTCGCCTAGGACGTATCACTCCCTGATTGGCTGCAGC  484

seq1  CCATCGGCCCAGTTGTCATCACGAGAAAGGCAGAACACATGGCGGGAAAA  593
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCATCGGCCCAGTTGTCATCACGGGAAAGGCAGAACACATGGCGGGAAAA  534

seq1  CTGCCCCTGCACGTGTGCAGATTATGTTTACCACTTAGAACACAGCTGTC  643
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGCCCCTGCACGTGTGCAGATTATGTTTACTACTTAGAACACAGCTGTC  584

seq1  AGTGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCTCACA  685
      || |||||||||||||||||||||||||||||||||| ||||
seq2  AGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCCCACA  626

seq1: chr8_39661600_39662722
seq2: B6Ng01-102C16.g_67_1181

seq1  GAATTCATAATTCATGTAAAAATACCTTGATGGAATCTTTGAATTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATTCATGTAAAAATACCTTGATGGAATCTTTGAATTAAAAA  50

seq1  TAGTGATGGCCATAGGGCTATAGGTCTAGAAAATGAAAGAAAAAGAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATGGCCATAGGGCTATAGGTCTAGAAAATGAAAGAAAAAGAAATT  100

seq1  TAAATTTAGGCTCTCTGGCTAACAAGTTTGGAGTAGAAAGATGTGCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAGGCTCTCTGGCTAACAAGTTTGGAGTAGAAAGATGTGCCATG  150

seq1  TAGTGGAGGTGAGGTGGCTATGATGATAAAGGTCTCCAGAGGGAGAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAGGTGAGGTGGCTATGATGATAAAGGTCTCCAGAGGGAGAATGG  200

seq1  GTCTATAAAGAGGTCTACCTTGAGTCCAAGGAGTCAAAGGTACAACATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAAAGAGGTCTACCTTGAGTCCAAGGAGTCAAAGGTACAACATGA  250

seq1  CCATGTCATAGCAACATCTGACAATGGACTTGAAGTGACTTCCAGCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCATAGCAACATCTGACAATGGACTTGAAGTGACTTCCAGCCCCT  300

seq1  GATTCCTCACTTTACCTGAAATTATTGAAATCTATAAACATAAGTTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCACTTTACCTGAAATTATTGAAATCTATAAACATAAGTTGGCT  350

seq1  CCTATCTATGACCACTTGGTATCTAAGATTAAGAAAAAACAATAAGGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTATGACCACTTGGTATCTAAGATTAAGAAAAAACAATAAGGGTT  400

seq1  TATATACAATAAGTGGGACAAGCAGGTCAGAGATGTGAAAATGTTGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACAATAAGTGGGACAAGCAGGTCAGAGATGTGAAAATGTTGACTT  450

seq1  ATTTATTGGTAAGATATGCATAAGAGAATTTACCATCTTGAACTACATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGGTAAGATATGCATAAGAGAATTTACCATCTTGAACTACATTA  500

seq1  TCCACTGAGCAGACAGACTTTTATCATCTTGTAAAATAAAAACTCTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGAGCAGACAGACTTTTATCATCTTGTAAAATAAAAACTCTAATA  550

seq1  TTTATATCTCTGAGAATTGAGAAATTTATACGAAGCACATACTAATACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCTCTGAGAATTGAGAAATTTATACGAAGCACATACTAATACAA  600

seq1  TCATACATGTACCTCTTTTGGTTACTTATTTTACTTGATATAAATACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATGTACCTCTTTTGGTTACTTATTTTACTTGATATAAATACTGT  650

seq1  TAATGTAACAAGGAACAGAATTTTCTTCCTTTTTGTGACAGAATAGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAACAAGGAACAGAATTTTCTTCCTTTTTGTGACAGAATAGTTCT  700

seq1  TTCTCATAATTAGGATGTGGTTTTGTTATGTCATTTGCCTATCAATGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATAATTAGGATGTGGTTTTGTTATGTCATTTGCCTATCAATGTGG  750

seq1  CAATTTCATAACTTCTACTTCTCGGCTAGTAATTGTGAACAATTCTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCATAACTTCTACTTCTCGGCTAGTAATTGTGAACAATTCTATTA  800

seq1  GAAACACAGTACTGAAATCAAAGTCCTGAGTTGACTGACTCATCAAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAGTACTGAAATCAAAGTCCTGAGTTGACTGACTCATCAAATTC  850

seq1  TTGGTTTTTTAGAACCCCCTATTATGAAAAAGAGCAATTTAACCATGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGGTTTTTTAGAACCCCCTATTATGAAAAAGAGCAATTTAACCATGTG-  899

seq1  AAAATACATGCAATGGTTTTTCTGTTATATACAACATTCCTTAGCTTGTT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAATACATGCAATGGTTTTTCTGTTATATACAACATTCCTTAGCTTG-T  948

seq1  TTACATTTGGGGAAAACTTTTTGATGCAAATACTAGACCTTGAAACAGCA  1000
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  TTACATTTGGGG-AAACTTTTTGATGCAAATACTAGACCTTG-AACAGCA  996

seq1  CCTCTACTTAAACATAAGCAGGAAGTCTCAAGCTTAGTATGCTATAACCA  1050
       ||||||||||||||||||| |||||||| ||||||||||||||| ||||
seq2  -CTCTACTTAAACATAAGCA-GAAGTCTC-AGCTTAGTATGCTAT-ACCA  1042

seq1  CCCTTCAGA-TCTTTCTACTTGTTCA-CTGAGAAGTAGTCTGCCCTTGAC  1098
      ||||||||| | ||||||| |||||| |||||||||||||||||| ||||
seq2  CCCTTCAGATTTTTTCTAC-TGTTCACCTGAGAAGTAGTCTGCCC-TGAC  1090

seq1  TGTAAACAGCAAAAGACATTCTTTA  1123
      |||||  |||||| |||||||||||
seq2  TGTAACAAGCAAAGGACATTCTTTA  1115