BAC Information

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BAC

Clone NameB6Ng01-102C23
Chromosome8 (Build37)
Map Location 113,349,099 - 113,466,963
singlet/doubletdoublet
Overlap geneSf3b3, Cog4, Fuk, St3gal2
Upstream geneAp1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik
Downstream geneDdx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102C23.bB6Ng01-102C23.g
ACCDH911150DH911151
length1,1531,060
definitionDH911150|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C23, 5' end.DH911151|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,349,099 - 113,350,250)(113,465,889 - 113,466,963)
sequence
gaattctttaccaaatattcactagaagatgaggatgaggtacaaaacaa
gctatttggctttcaagagatttcacatctgtaatctgaattagatttcc
tagtttttgtccttaatctttaaaaaaggggccaaactgtcttgtttgtg
gacacttcagagtcccaattctctttcttgtgaatccatgcatgcttaag
atacatacactgacaacactgcctaagcacaacaacagaaccccacccca
aggaccataatggaagataacacagggccagcagaacaaaacaagtaaca
tacaggatccatctcgaaatagaccagctctcccccagtcagggcgatca
ccacttgtcgctggttcactgcacacttcacaatcgttttcttgccggga
gtcttccactcattaactcttttatctgctcgtatgtgtcggatgccatc
tggatacacctagaagtcagtcaaagaagaacatctaactagcaatctga
ttgtcacccagaatggccctcacactggcacactgggaccacacaaatga
ggcactgcttgtttttgaaatgttcatgctttgccacctcagttgagaaa
ggtcccaagcccacatgttaatgataaagatgagaaaagcagtgataggg
aatgaccaacagggaggaaatgttaggcttcaaattttcctaactgccga
gttattcaaagcctgaaagggatgaattctcagtacccctttttatgttg
ataagacattagaccctcccctcaggttttctggaaggtgagaatgaaga
aacatgaattcaagcacaccacaaaacaagagaaggatgggcaaaggatg
ggcaaaggacggacggccacgcacgctgaggaggtgcacgctcacctgca
ccagtgcatcatctcctaacaaggagcagacaagttggagtggtgcccaa
gaagcagagtcagtcacttcttccacaagtctctccgatagatagcacaa
gtgtggcattcacgaaagacacaatgatgtagcatcaaactcatctggaa
aaaagaaaaaagaggaagctgttaggaaaatttcaatttactagcattaa
gaaagccagttgagacacaaacaagtttagaaaaccttccacacaacact
tct
gaattcctagcctgtatccccacagccctggagagcatcctgaggcataa
gccctgcacataacccactagttgaccccacgccaggtcaatcagctctc
caaccctgagaacaatctcccccgggggaagcagtcttgcttcccagccc
ccagctctgaccaatcacaggcactgttaccccttggtgataggtacggg
cttccaggaacacagagatctcagaggcagatatgccttggtggaccctt
actcctacatagaacagaagccatatgctcactgtggggcagattgtcag
ctcttagcccagctgccacagagatcctacatagctcccccgagacccat
ctcacgcctgtagctctctagtcattaagtcaacagtaggattctaggaa
agccaggagggtttcccgtgaggtcatgaggagacatgaggagaaccaga
ggatgcatagaaactttaaagggaggagagagggagaaatcacataagac
aggacacaatcagagtatggcggtagactgaaggagagaaatccaaggct
ctcgggagggtttttagaagaagtagaaattaagctgaagaaatgctagc
ggaagaaaagccagacagaagcttgcgtggcccagacttgaggttttcat
ctgcaacctgagctttctcttcatttcttttcttttcttctttttttttt
ttttttttggtttttcgagacagggtttctctgtgtagccctgactgtcc
tggaactcactctatagaagaccaggctggccttgaactcagaaatccgc
ctgcctctgcctcccgagtgctgggattaaaggcgtgcgccaccacaccc
agcccacctgagctttctggacaccttcaatgagcagtaacacctgggca
cagcttcttcaagatgaagaaaccagggctggggagatggctcagcgtta
gaagcactgactgctcttcagagtctgagttcaaatcccggcaccacatg
tgctcacacatctgtaatggatcaatgttcctttggtgtgactgaagaag
ttacacgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113349099_113350250
seq2: B6Ng01-102C23.b_38_1190

seq1  GAATTCTTTACCAAATATTCACTAGAAGATGAGGATGAGGTACAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCAAATATTCACTAGAAGATGAGGATGAGGTACAAAACAA  50

seq1  GCTATTTGGCTTTCAAGAGATTTCACATCTGTAATCTGAATTAGATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGGCTTTCAAGAGATTTCACATCTGTAATCTGAATTAGATTTCC  100

seq1  TAGTTTTTGTCCTTAATCTTTAAAAAAGGGGCCAAACTGTCTTGTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTGTCCTTAATCTTTAAAAAAGGGGCCAAACTGTCTTGTTTGTG  150

seq1  GACACTTCAGAGTCCCAATTCTCTTTCTTGTGAATCCATGCATGCTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCAGAGTCCCAATTCTCTTTCTTGTGAATCCATGCATGCTTAAG  200

seq1  ATACATACACTGACAACACTGCCTAAGCACAACAACAGAACCCCACCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACACTGACAACACTGCCTAAGCACAACAACAGAACCCCACCCCA  250

seq1  AGGACCATAATGGAAGATAACACAGGGCCAGCAGAACAAAACAAGTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATAATGGAAGATAACACAGGGCCAGCAGAACAAAACAAGTAACA  300

seq1  TACAGGATCCATCTCGAAATAGACCAGCTCTCCCCCAGTCAGGGCGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGATCCATCTCGAAATAGACCAGCTCTCCCCCAGTCAGGGCGATCA  350

seq1  CCACTTGTCGCTGGTTCACTGCACACTTCACAATCGTTTTCTTGCCGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGTCGCTGGTTCACTGCACACTTCACAATCGTTTTCTTGCCGGGA  400

seq1  GTCTTCCACTCATTAACTCTTTTATCTGCTCGTATGTGTCGGATGCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCACTCATTAACTCTTTTATCTGCTCGTATGTGTCGGATGCCATC  450

seq1  TGGATACACCTAGAAGTCAGTCAAAGAAGAACATCTAACTAGCAATCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACACCTAGAAGTCAGTCAAAGAAGAACATCTAACTAGCAATCTGA  500

seq1  TTGTCACCCAGAATGGCCCTCACACTGGCACACTGGGACCACACAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACCCAGAATGGCCCTCACACTGGCACACTGGGACCACACAAATGA  550

seq1  GGCACTGCTTGTTTTTGAAATGTTCATGCTTTGCCACCTCAGTTGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGCTTGTTTTTGAAATGTTCATGCTTTGCCACCTCAGTTGAGAAA  600

seq1  GGTCCCAAGCCCACATGTTAATGATAAAGATGAGAAAAGCAGTGATAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAAGCCCACATGTTAATGATAAAGATGAGAAAAGCAGTGATAGGG  650

seq1  AATGACCAACAGGGAGGAAATGTTAGGCTTCAAATTTTCCTAACTGCCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCAACAGGGAGGAAATGTTAGGCTTCAAATTTTCCTAACTGCCGA  700

seq1  GTTATTCAAAGCCTGAAAGGGATGAATTCTCAGTACCCCTTTTTATGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCAAAGCCTGAAAGGGATGAATTCTCAGTACCCCTTTTTATGTTG  750

seq1  ATAAGACATTAGACCCTCCCCTCAGGTTTTCTGGAAGGTGAGAATGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACATTAGACCCTCCCCTCAGGTTTTCTGGAAGGTGAGAATGAAGA  800

seq1  AACATGAATTCAAGCACACCACAAAACAAGAGAAGGATGGGCAAAGGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAATTCAAGCACACCACAAAACAAGAGAAGGATGGGCAAAGGATG  850

seq1  GGCAAAGGACGGACGGCCAAGGCACGCTGAGGAGGTGCACGCTCACCTGC  900
      |||||||||||||||||| | |||||||||||||||||||||||||||||
seq2  GGCAAAGGACGGACGGCC-ACGCACGCTGAGGAGGTGCACGCTCACCTGC  899

seq1  ACCAGTGCATCATCTCCTAACAAGGAGCAGGACAAGGTTGGAGTGGTGCC  950
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  ACCAGTGCATCATCTCCTAACAAGGAGCA-GACAA-GTTGGAGTGGTGCC  947

seq1  CAAGAAGCCAGAGTCAGTCACTTCTTCCAC-AGTCTCTCCGATAGATAGC  999
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  CAAGAAG-CAGAGTCAGTCACTTCTTCCACAAGTCTCTCCGATAGATAGC  996

seq1  ACAAGTGTGGCATTCACGAAAGACACAATGATGTAGGCATCAAACTCATC  1049
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACAAGTGTGGCATTCACGAAAGACACAATGATGTA-GCATCAAACTCATC  1045

seq1  TGGAAAAAAGAAAACAGAGG-AGCTGTTAGGAAAAATTCAAATTTACTAG  1098
      |||||||||||||| ||||| |||||||||||||| ||| ||||||||||
seq2  TGGAAAAAAGAAAAAAGAGGAAGCTGTTAGGAAAATTTC-AATTTACTAG  1094

seq1  CATT-AGAAAGGCAGTTGAGACAC-AACAGTTTTAGAAACCTTT---CAC  1143
      |||| |||||| |||||||||||| ||||  |||||||| | ||   |||
seq2  CATTAAGAAAGCCAGTTGAGACACAAACAAGTTTAGAAAACCTTCCACAC  1144

seq1  AACACTTCT  1152
      |||||||||
seq2  AACACTTCT  1153

seq1: chr8_113465889_113466963
seq2: B6Ng01-102C23.g_67_1126 (reverse)

seq1  GTACGTTGTAACTGTCTTCAGTCACACCAGAAGGGGACATTTGATCCCAT  50
      ||||| ||||||| ||||||||||||||  || || ||| ||||| ||||
seq2  GTACG-TGTAACT-TCTTCAGTCACACC--AAAGGAACA-TTGAT-CCAT  44

seq1  TACAGATGGTTGTGAGCCACCATGTGGTTGCCGGGATTTGAACTCAGGAC  100
      ||||||||  |||||||   ||||||| |||||||||||||||||||   
seq2  TACAGATG--TGTGAGC--ACATGTGG-TGCCGGGATTTGAACTCAG--A  87

seq1  CTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCCCCAGCCC  150
      |||| |||||||||||||||||  ||| ||||||||||||||||||||||
seq2  CTCT-GAAGAGCAGTCAGTGCTTCTAA-CGCTGAGCCATCTCCCCAGCCC  135

seq1  TGGTTTCTTCATCTTGAAGAAGCTGTGGCCAGGTGTTACTGCTCATTGAA  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGTTTCTTCATCTTGAAGAAGCTGTGCCCAGGTGTTACTGCTCATTGAA  185

seq1  GGTGTCCAGAAAGCTCAGGTGGGCTGGGTGTGGTGGCGCACGCCTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCAGAAAGCTCAGGTGGGCTGGGTGTGGTGGCGCACGCCTTTAAT  235

seq1  CCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGC  285

seq1  CTGGTCTTCTATAGAGTGAGTTCCAGGACAGTCAGGGCTACACAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTTCTATAGAGTGAGTTCCAGGACAGTCAGGGCTACACAGAGAAA  335

seq1  CCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAGAAGAAAAGAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAGAAGAAAAGAAAAGA  385

seq1  AATGAAGAGAAAGCTCAGGTTGCAGATGAAAACCTCAAGTCTGGGCCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAGAAAGCTCAGGTTGCAGATGAAAACCTCAAGTCTGGGCCACG  435

seq1  CAAGCTTCTGTCTGGCTTTTCTTCCGCTAGCATTTCTTCAGCTTAATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTCTGTCTGGCTTTTCTTCCGCTAGCATTTCTTCAGCTTAATTTC  485

seq1  TACTTCTTCTAAAAACCCTCCCGAGAGCCTTGGATTTCTCTCCTTCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTCTAAAAACCCTCCCGAGAGCCTTGGATTTCTCTCCTTCAGTC  535

seq1  TACCGCCATACTCTGATTGTGTCCTGTCTTATGTGATTTCTCCCTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGCCATACTCTGATTGTGTCCTGTCTTATGTGATTTCTCCCTCTCTC  585

seq1  CTCCCTTTAAAGTTTCTATGCATCCTCTGGTTCTCCTCATGTCTCCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTAAAGTTTCTATGCATCCTCTGGTTCTCCTCATGTCTCCTCAT  635

seq1  GACCTCACGGGAAACCCTCCTGGCTTTCCTAGAATCCTACTGTTGACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCACGGGAAACCCTCCTGGCTTTCCTAGAATCCTACTGTTGACTTA  685

seq1  ATGACTAGAGAGCTACAGGCGTGAGATGGGTCTCGGGGGAGCTATGTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAGAGAGCTACAGGCGTGAGATGGGTCTCGGGGGAGCTATGTAGG  735

seq1  ATCTCTGTGGCAGCTGGGCTAAGAGCTGACAATCTGCCCCACAGTGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTGGCAGCTGGGCTAAGAGCTGACAATCTGCCCCACAGTGAGCA  785

seq1  TATGGCTTCTGTTCTATGTAGGAGTAAGGGTCCACCAAGGCATATCTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTCTGTTCTATGTAGGAGTAAGGGTCCACCAAGGCATATCTGCC  835

seq1  TCTGAGATCTCTGTGTTCCTGGAAGCCCGTACCTATCACCAAGGGGTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATCTCTGTGTTCCTGGAAGCCCGTACCTATCACCAAGGGGTAAC  885

seq1  AGTGCCTGTGATTGGTCAGAGCTGGGGGCTGGGAAGCAAGACTGCTTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGTGATTGGTCAGAGCTGGGGGCTGGGAAGCAAGACTGCTTCCC  935

seq1  CCGGGGGAGATTGTTCTCAGGGTTGGAGAGCTGATTGACCTGGCGTGGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGGAGATTGTTCTCAGGGTTGGAGAGCTGATTGACCTGGCGTGGGG  985

seq1  TCAACTAGTGGGTTATGTGCAGGGCTTATGCCTCAGGATGCTCTCCAGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAGTGGGTTATGTGCAGGGCTTATGCCTCAGGATGCTCTCCAGGG  1035

seq1  CTGTGGGGATACAGGCTAGGAATTC  1075
      |||||||||||||||||||||||||
seq2  CTGTGGGGATACAGGCTAGGAATTC  1060