BAC Information

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BAC

Clone NameB6Ng01-103A19
Chromosome8 (Build37)
Map Location 13,056,881 - 13,084,927
singlet/doubletdoublet
Overlap geneProz, Pcid2
Upstream geneLOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10
Downstream geneCul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103A19.bB6Ng01-103A19.g
ACCDH911761DH911762
length1,118151
definitionDH911761|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A19, 5' end.DH911762|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,056,881 - 13,058,010)(13,084,777 - 13,084,927)
sequence
gaattcccctgagctaaccagggtgttgaatttacacaggcccttcttcc
tgaacacaatatcaaatcacaatatcaactcaccagttgctaatagagat
cctacccccaccagtatgtgggtcttagccccagctttgattaggagctc
agcagtctttgcaaaacctaagtcctggccttatcccagacatccaatcc
taagtcccgagagtgagcctaaccctatataacactatcatgccatccca
gcaggtgttcgttgagtggcatgatgtggccggacagggttcagggcatg
tctctcccctctagtcttctattgcttccaagccccaaattaaatgtgga
aaccaagcctacattcagtaaatagagtaactttttcccaaaagtaccta
tagcttgaactttacataactttcctaagcaaagtgtaaaggttccagta
caaaacttcccccaaatcaagagctggacagagtcctttgtaaacagatt
ttgcaacatttggaaaagtcaaacaaaaacaacacttgatttcctagaac
cataatggctgagagtgaggccagggtctgagagcagagctgacctcagc
agctgcagcggggacagtgatgtggaccctggagaacacctgctctgtag
cgtggtcccctggccctgcctgcaggtcagcagtgggaggatcacagttt
cacctgcctctggggatggactttgtccttaagaacaagaactccctggg
ctccaacaaccccaggacaaggtcagcatccacacaggtccctgaatcaa
tagaaagacaagcccgatactctgtgtgggtgtggggtcagcccacgggg
gaaactgaggagacactaaaatgtgagttttcaggctacagggatggctc
agcggtgaagagcactgactgttctgccggaggccctgggttcccagcac
ccacatggcagcgcacagctgtctttacaccagctccagggaacccacta
ctcagacgcacatgcagacaatcactatttcacatatataaaaaaaataa
tacattatttttgaagacgtaatttcaagtcatttactcagaacacttca
tgttatacattttttacc
actatgtaacctagactatcctcaaattcatggttatcctccggcctcag
gctcctgagtgtcctggaattacagggggtaccacacctagatttattgt
atttttgaaatttattattttgtgtatgtgtgtgtgtgtgtgtgtgtgtg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_13056881_13058010
seq2: B6Ng01-103A19.b_30_1147

seq1  GAATTCCCCTGAGCTAACCAGGGTGTTGAATGTACACAGGCCCTTCTTCC  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATTCCCCTGAGCTAACCAGGGTGTTGAATTTACACAGGCCCTTCTTCC  50

seq1  TGAACACAATATCAAATCACAATATCAACTCACCAGTTGCTAATAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAATATCAAATCACAATATCAACTCACCAGTTGCTAATAGAGAT  100

seq1  CCTACCCCCACCAGTATGTGGGTCTTAGCCCCAGCTTTGATTAGGAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCCCACCAGTATGTGGGTCTTAGCCCCAGCTTTGATTAGGAGCTC  150

seq1  AGCAGTCTTTGCAAAACCTAAGTCCTGGCCTTATCCCAGACATCCAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTTTGCAAAACCTAAGTCCTGGCCTTATCCCAGACATCCAATCC  200

seq1  TAAGTCCCGAGAGTGAGCCTAACCCTATATAACACTATCATGCCATCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCCGAGAGTGAGCCTAACCCTATATAACACTATCATGCCATCCCA  250

seq1  GCAGGTGTTCGTTGAGTGGCATGATGTGGCCGGACAGGGTTCAGGGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTTCGTTGAGTGGCATGATGTGGCCGGACAGGGTTCAGGGCATG  300

seq1  TCTCTCCCCTCTAGTCTTCTATTGCTTCCAAGCCCCAAATTAAATGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCCTCTAGTCTTCTATTGCTTCCAAGCCCCAAATTAAATGTGGA  350

seq1  AACCAAGCCTACATTCAGTAAATAGAGTAACTTTTTCCCAAAAGTACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCCTACATTCAGTAAATAGAGTAACTTTTTCCCAAAAGTACCTA  400

seq1  TAGCTTGAACTTTACATAACTTTCCTAAGCAAAGTGTAAAGGTTCCAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGAACTTTACATAACTTTCCTAAGCAAAGTGTAAAGGTTCCAGTA  450

seq1  CAAAACTTCCCCCAAATCAAGAGCTGGACAGAGTCCTTTGTAAACAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTCCCCCAAATCAAGAGCTGGACAGAGTCCTTTGTAAACAGATT  500

seq1  TTGCAACATTTGGAAAAGTCAAACAAAAACAACACTTGATTTCCTAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACATTTGGAAAAGTCAAACAAAAACAACACTTGATTTCCTAGAAC  550

seq1  CATAATGGCTGAGAGTGAGGCCAGGGTCTGAGAGCAGAGCTGACCTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGGCTGAGAGTGAGGCCAGGGTCTGAGAGCAGAGCTGACCTCAGC  600

seq1  AGCTGCAGCGGGGACAGTGATGTGGACCCTGGAGAACACCTGCTCTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGCGGGGACAGTGATGTGGACCCTGGAGAACACCTGCTCTGTAG  650

seq1  CGTGGTCCCCTGGCCCTGCCTGCAGGTCAGCAGTGGGAGGATCACAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTCCCCTGGCCCTGCCTGCAGGTCAGCAGTGGGAGGATCACAGTTT  700

seq1  CACCTGCCTCTGGGGATGGACTTTGTCCTTAAGAACAAGAACTCCCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTCTGGGGATGGACTTTGTCCTTAAGAACAAGAACTCCCTGGG  750

seq1  CTCCAACAACCCCAGGACAAGGTCAGCATCCACACAGGTCCCTGAATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACAACCCCAGGACAAGGTCAGCATCCACACAGGTCCCTGAATCAA  800

seq1  TAGAAAGACAAGCCCGATACTCTGTGTGGGTGTGGGGTCAGCCCACGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGACAAGCCCGATACTCTGTGTGGGTGTGGGGTCAGCCCACGGGG  850

seq1  GAAACTGAGGAGACACTAAAATGTGAGTTTTCAGGCTACAGGGATGGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAGGAGACACTAAAATGTGAGTTTTCAGGCTACAGGGATGGCTC  900

seq1  AGCGGTGAAGAGCACTGACTGTTCTGCCGGAGGCCCTGGGTTCCCAGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTGAAGAGCACTGACTGTTCTGCCGGAGGCCCTGGGTTCCCAGCAC  950

seq1  CCACATGGCAGCGCACAGCTGTCTTTAACACCAGCTCCAGGGAACCCAAC  1000
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  CCACATGGCAGCGCACAGCTGTCTTT-ACACCAGCTCCAGGGAACCC-AC  998

seq1  TACTCAGACGCACATGCAGGACAATCACTAATTCACATATAATTAAAAAA  1050
      |||||||||||||||||| ||||||||||| ||||||||||  |||||||
seq2  TACTCAGACGCACATGCA-GACAATCACTATTTCACATATA--TAAAAAA  1045

seq1  AAATAAATACATTATTTTTGAAGACGTAATTTTCAAAGTCAATTTACTCA  1100
      ||   |||||||||||||||||||||||||||   ||||| |||||||| 
seq2  AA--TAATACATTATTTTTGAAGACGTAATTT--CAAGTC-ATTTACTC-  1089

seq1  AGAACACTTTCATGTTATACATATTTTACC  1130
      ||||||| |||||||||||||| |||||||
seq2  AGAACAC-TTCATGTTATACATTTTTTACC  1118

seq1: chr8_13084777_13084927
seq2: B6Ng01-103A19.g_74_224 (reverse)

seq1  GCACACACACACACACACACACACATACACAAAATAATAAATTTCAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACACACACACACACACATACACAAAATAATAAATTTCAAAAA  50

seq1  TACAATAAATCTAGGTGTGGTACCCCCTGTAATTCCAGGACACTCAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAATCTAGGTGTGGTACCCCCTGTAATTCCAGGACACTCAGGAG  100

seq1  CCTGAGGCCGGAGGATAACCATGAATTTGAGGATAGTCTAGGTTACATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGCCGGAGGATAACCATGAATTTGAGGATAGTCTAGGTTACATAG  150

seq1  T  151
      |
seq2  T  151