BAC Information

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BAC

Clone NameB6Ng01-103D23
Chromosome8 (Build37)
Map Location 109,403,063 - 109,404,137
singlet/doubletsinglet
Overlap geneHas3
Upstream geneNutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7
Downstream gene5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103D23.bB6Ng01-103D23.g
ACCDH911897DH911898
length4671,084
definitionDH911897|Mus musculus domesticus DNA, BAC clone: B6Ng01-103D23, 5' end.DH911898|Mus musculus domesticus DNA, BAC clone: B6Ng01-103D23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgctttataagtgatggattcttgggacagagtttttagctcaatggt
agaacccttgcctaacatgtgcaagtacttgcttgccagtactgaattaa
aaatggatggatggatggatggatggatggatggatggatggatagatag
atagatagatagatagatagatagatagatagatagatagatagatagaa
tgccaggagtaactgatgcttatactcccagcacttaggaggaaatctgc
tgtgtattattggagactagcttgggctacatgagaccctcatctcaaca
gacaagtacattgcttgcttagcatgcaagaagccctgagtctgattttc
cagcaccacattaactgggcttagtgacacatacctataatcccaacact
tgggaactgaaagcagaagagcagaagtccaaggccatccttaactactt
agcaaatttgaggccag
gaattccttggagaagccactgagaatggatgctctcaaagatgaccaac
atggatctgaaggttcatttgggcaactccagaaagctttcctttgggaa
tgattgtcgagaaagttacagatgctaactaaccagctgccgaagtcctg
accagtcctggacgatgaacagtgtggccagaggctgttgttacgtccat
gcatgtagggaacagccttgaaagccttgtaagcgtctattctctaccat
ggtcacatgggaatttacccatgaaaatgaagaggtaactgctgctctcc
ccaccagaaaacaacaactaagcgacatgcgcggctctgaagagattgaa
atagcaagcaggatgagagccatatgtgagaggcattcaggtaggaatga
gctagaataactaaagacttcttatctgaatccactggggttgagtcttc
ccggtagatggctaaaacatccagtctgcccagcaagttctcttgacaac
ttggggaattttgtaaaagaccaagcagttttcagttggaacacattcac
tccaaggcatccatggtttttagcaccaacgcaatctttgatcctcccgt
caaaccatttttgtatgagacagtcaggatctcatgtagtctagcctaac
cctgaccctctcatctctttctgcttctaagtgctgggatgacaaatgtg
cagcagaacaactgggcggcttttgtttggtgcattgcagactttgcttt
gtactgtgcacccaaaacagataaaatccccaccagactcattccttact
tctggtgacttggctcatccctgggatgttttggtgtggagtggaataat
attaattacataaagcaccattttcttagaccctgttttttgaccaaagg
tcaaggctttccagcctcattatctcaggcacagtcttaacgcattgatg
gctaattcggaggttaggggaaatgggacagtagccggtatgggacagta
cacttgacaggaactccttgtcattgtttcagctgggctaggaggatata
atctatgagcttgtcattgctttgttttctgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109403063_109404137
seq2: B6Ng01-103D23.g_67_1150 (reverse)

seq1  GTACAGAAA--CAAGCAATGAC-AGCTCATAGAATATATCCTCCTAGCCC  47
      |||||||||   |||||||||| |||||||||| ||||||||||||||||
seq2  GTACAGAAAACAAAGCAATGACAAGCTCATAGATTATATCCTCCTAGCCC  50

seq1  AGCTGAA--CATGACAAGGAGTTCCTGTCAAGTGTTACTGTCCCATACCG  95
      |||||||   |||||||||||||||||||||||| |||||||||||||||
seq2  AGCTGAAACAATGACAAGGAGTTCCTGTCAAGTG-TACTGTCCCATACCG  99

seq1  GCTACTGTCCCATTT-CCCTAACCTCCG-ATTAGCCATCAATGCGTTAAG  143
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  GCTACTGTCCCATTTCCCCTAACCTCCGAATTAGCCATCAATGCGTTAAG  149

seq1  ACTGTGCCTGAGATAATGAGGCTGGGAAGCC-TGACCTTTGGTCAAAAAA  192
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  ACTGTGCCTGAGATAATGAGGCTGGAAAGCCTTGACCTTTGGTCAAAAAA  199

seq1  CAGGGTCTAAG-AAATGGTGCTTTATGTAATTAATA-TATTCCACTCCAC  240
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  CAGGGTCTAAGAAAATGGTGCTTTATGTAATTAATATTATTCCACTCCAC  249

seq1  ACCAAAACATCCCAGGGATGAGCCAAGTCACCAGAAGTAAGGAATGAGTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACATCCCAGGGATGAGCCAAGTCACCAGAAGTAAGGAATGAGTC  299

seq1  TGGTGGGGATTTTATCTGTTTTGGGTGCACAGTACAAAGCAAAGTCTGCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGGATTTTATCTGTTTTGGGTGCACAGTACAAAGCAAAGTCTGCA  349

seq1  ATGCACCAAACAAAAGCCGCCCAGTTGTTCTGCTGCACATTTGTCATCCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCAAACAAAAGCCGCCCAGTTGTTCTGCTGCACATTTGTCATCCC  399

seq1  AGCACTTAGAAGCAGAAAGAGATGAGAGGGTCAGGGTTAGGCTAGACTAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTAGAAGCAGAAAGAGATGAGAGGGTCAGGGTTAGGCTAGACTAC  449

seq1  ATGAGATCCTGACTGTCTCATACAAAAATGGTTTGACGGGAGGATCAAAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATCCTGACTGTCTCATACAAAAATGGTTTGACGGGAGGATCAAAG  499

seq1  ATTGCGTTGGTGCTAAAAACCATGGATGCCTTGGAGTGAATGTGTTCCAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCGTTGGTGCTAAAAACCATGGATGCCTTGGAGTGAATGTGTTCCAA  549

seq1  CTGAAAACTGCTTGGTCTTTTACAAAATTCCCCAAGTTGTCAAGAGAACT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACTGCTTGGTCTTTTACAAAATTCCCCAAGTTGTCAAGAGAACT  599

seq1  TGCTGGGCAGACTGGATGTTTTAGCCATCTACCGGGAAGACTCAACCCCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGCAGACTGGATGTTTTAGCCATCTACCGGGAAGACTCAACCCCA  649

seq1  GTGGATTCAGATAAGAAGTCTTTAGTTATTCTAGCTCATTCCTACCTGAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTCAGATAAGAAGTCTTTAGTTATTCTAGCTCATTCCTACCTGAA  699

seq1  TGCCTCTCACATATGGCTCTCATCCTGCTTGCTATTTCAATCTCTTCAGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCACATATGGCTCTCATCCTGCTTGCTATTTCAATCTCTTCAGA  749

seq1  GCCGCGCATGTCGCTTAGTTGTTGTTTTCTGGTGGGGAGAGCAGCAGTTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCGCATGTCGCTTAGTTGTTGTTTTCTGGTGGGGAGAGCAGCAGTTA  799

seq1  CCTCTTCATTTTCATGGGTAAATTCCCATGTGACCATGGTAGAGAATAGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCATTTTCATGGGTAAATTCCCATGTGACCATGGTAGAGAATAGA  849

seq1  CGCTTACAAGGCTTTCAAGGCTGTTCCCTACATGCATGGACGTAACAACA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTACAAGGCTTTCAAGGCTGTTCCCTACATGCATGGACGTAACAACA  899

seq1  GCCTCTGGCCACACTGTTCATCGTCCAGGACTGGTCAGGACTTCGGCAGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGCCACACTGTTCATCGTCCAGGACTGGTCAGGACTTCGGCAGC  949

seq1  TGGTTAGTTAGCATCTGTAACTTTCTCGACAATCATTCCCAAAGGAAAGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGTTAGCATCTGTAACTTTCTCGACAATCATTCCCAAAGGAAAGC  999

seq1  TTTCTGGAGTTGCCCAAATGAACCTTCAGATCCATGTTGGTCATCTTTGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAGTTGCCCAAATGAACCTTCAGATCCATGTTGGTCATCTTTGA  1049

seq1  GAGCATCCATTCTCAGTGGCTTCTCCAAGGAATTC  1075
      |||||||||||||||||||||||||||||||||||
seq2  GAGCATCCATTCTCAGTGGCTTCTCCAAGGAATTC  1084