BAC Information

Click to search

BAC

Clone NameB6Ng01-103F20
Chromosome8 (Build37)
Map Location 51,584,480 - 51,745,935
singlet/doubletdoublet
Overlap geneLOC100039966
Upstream geneLOC100039919, EG667495, LOC100039954
Downstream geneLOC667517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103F20.bB6Ng01-103F20.g
ACCDH911977DH911978
length1,0001,085
definitionDH911977|Mus musculus domesticus DNA, BAC clone: B6Ng01-103F20, 5' end.DH911978|Mus musculus domesticus DNA, BAC clone: B6Ng01-103F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,745,416 - 51,745,935)(51,584,480 - 51,585,562)
sequence
gaattcaacaagatttttttgttttatccattcaaaatacacttgttctt
agccaaaagaccgagaagcgattatccattcgaaatatgtattacataag
atttttgtctctgtttcaaagaagttcagaaagcatttacataaatctct
ctgtctagattatctctttctctatctaatctcttcctctagttaataat
gaagatgataaccatctcatatagtctctaattaatgatgaagataacca
tctcatatactcttaagaagcacatgtatatttttcatcagatatttttt
attagatattttctttatttacatttcaaatgttatcccctttcctagtt
tcccctcctaaaatcccctattccctccctcttccacctgctcaccaaac
cacccactcccacttcctggccctggcattcccctatactggggcattta
accttcacaggactgagggcctctcctcccattgatgactgacaaggtca
tcctctgctacatatgcagctagagccatgagtcccaccagggagctctg
agggcactggttaattcatgctgttgtttctcctatggtgctgcaaaccc
tttcagctcctcgggtactttctctagctccttcattgggtgaagtgctc
tgtccaatggatagctgtgagcattcacttctgtattttttcagatgctg
gcagagcctctcaggagacagctatatcaggctcctgtcagcaagctctt
gttggcatccacaacagagtctgggtttggtggttgtttatgggatggat
caccaggtgggagagtctctgtatggtcattcttcagtctctgctctgaa
ctttgtctctataactccttccatgggtattttgttcccccttctgaaaa
ggatcgaagtttccacactttggttccttgttcttgagtttatgtgtttt
gcgaaatgtatctgggtattcctgcttctgggctatatcacttacggtga

gaattccattcacattgcttacatgtgttttggtcaaagttcaaaccctt
attagtgattaacttggggccacaatttattaagaaaattttatttgaag
agttaacgttaactgttcaaatgaatagtccttagaaaagaagtgtacat
ttatacttttatatttttcagtgaagtttatcatcccatttaatcaagtt
ttattgctaagtgtttagtgtgttcaggatgacctgataagaactggatg
ttaaaggcttagtcaaatacaactattgatttggaggctgctcggtgttt
cagaccgacatctcatgattctatcatgaagttacaaggcaagtgacaga
ttattccatataatgaggttttccatggtaatggaggaactgattgagct
aggtgatgagacttttggagtgagctgaagaatacaaaatgtatttgtgg
aagcaagaatgattccagttagagaaaagtgcctatgcaaatgacagatg
cagaacggaaactctgatatattggctgaatgaaaatcaaagtaaatcag
cttgtctggaatatgcagtagatagaaagctgtcaatacccttcctttgc
acatcactgagacttatccatactgggataagatatttaatggaataaat
tgtttataaagaatataccccaaaaatttccaacatataacaaggacaca
tgctctactatgtccatagcagctttattcataatagccagaagctggaa
acaacccagatgtccctcaacaaaggaatgaatacagaaaatatggtaca
tattcacatggagtactactgagtgattaaaaacaatgaattttatgaaa
tcaacaggcaaatggatggaaatagaaaatatcatcccaaccctgcacag
aagaacacacatggtatgtacttgctgattagtggatataggcccaaatg
cccatggtcaatccacagaccttatagatttacgaggaaggaaggtcagg
aggggtggatgcttcagttctaccttggagaagaagagaacaggatcata
aacaggaggaggaaaggaggagaggggggaccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_51745416_51745935
seq2: B6Ng01-103F20.b_48_567 (reverse)

seq1  GCTGCATATGTAGCAGAGGATGACCTTGTCAGTCATCAATGGGAGGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATATGTAGCAGAGGATGACCTTGTCAGTCATCAATGGGAGGAGAG  50

seq1  GCCCTCAGTCCTGTGAAGGTTAAATGCCCCAGTATAGGGGAATGCCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCAGTCCTGTGAAGGTTAAATGCCCCAGTATAGGGGAATGCCAGGG  100

seq1  CCAGGAAGTGGGAGTGGGTGGTTTGGTGAGCAGGTGGAAGAGGGAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGTGGGAGTGGGTGGTTTGGTGAGCAGGTGGAAGAGGGAGGGAA  150

seq1  TAGGGGATTTTAGGAGGGGAAACTAGGAAAGGGGATAACATTTGAAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGATTTTAGGAGGGGAAACTAGGAAAGGGGATAACATTTGAAATGT  200

seq1  AAATAAAGAAAATATCTAATAAAAAATATCTGATGAAAAATATACATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAAAATATCTAATAAAAAATATCTGATGAAAAATATACATGTG  250

seq1  CTTCTTAAGAGTATATGAGATGGTTATCTTCATCATTAATTAGAGACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAAGAGTATATGAGATGGTTATCTTCATCATTAATTAGAGACTAT  300

seq1  ATGAGATGGTTATCATCTTCATTATTAACTAGAGGAAGAGATTAGATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGGTTATCATCTTCATTATTAACTAGAGGAAGAGATTAGATAGA  350

seq1  GAAAGAGATAATCTAGACAGAGAGATTTATGTAAATGCTTTCTGAACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGATAATCTAGACAGAGAGATTTATGTAAATGCTTTCTGAACTTC  400

seq1  TTTGAAACAGAGACAAAAATCTTATGTAATACATATTTCGAATGGATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACAGAGACAAAAATCTTATGTAATACATATTTCGAATGGATAAT  450

seq1  CGCTTCTCGGTCTTTTGGCTAAGAACAAGTGTATTTTGAATGGATAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCTCGGTCTTTTGGCTAAGAACAAGTGTATTTTGAATGGATAAAAC  500

seq1  AAAAAAATCTTGTTGAATTC  520
      ||||||||||||||||||||
seq2  AAAAAAATCTTGTTGAATTC  520

seq1: chr8_51584480_51585562
seq2: B6Ng01-103F20.g_68_1152

seq1  GAATTCCATTCACATTGCTTACATGTGTTTTGGTCAAAGTTCAAACCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCACATTGCTTACATGTGTTTTGGTCAAAGTTCAAACCCTT  50

seq1  ATTAGTGATTAACTTGGGGCCACAATTTATTAAGAAAATTTTATTTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGATTAACTTGGGGCCACAATTTATTAAGAAAATTTTATTTGAAG  100

seq1  AGTTAACGTTAACTGTTCAAATGAATAGTCCTTAGAAAAGAAGTGTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACGTTAACTGTTCAAATGAATAGTCCTTAGAAAAGAAGTGTACAT  150

seq1  TTATACTTTTATATTTTTCAGTGAAGTTTATCATCCCATTTAATCAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTTTATATTTTTCAGTGAAGTTTATCATCCCATTTAATCAAGTT  200

seq1  TTATTGCTAAGTGTTTAGTGTGTTCAGGATGACCTGATAAGAACTGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCTAAGTGTTTAGTGTGTTCAGGATGACCTGATAAGAACTGGATG  250

seq1  TTAAAGGCTTAGTCAAATACAACTATTGATTTGGAGGCTGCTCGGTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCTTAGTCAAATACAACTATTGATTTGGAGGCTGCTCGGTGTTT  300

seq1  CAGACCGACATCTCATGATTCTATCATGAAGTTACAAGGCAAGTGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCGACATCTCATGATTCTATCATGAAGTTACAAGGCAAGTGACAGA  350

seq1  TTATTCCATATAATGAGGTTTTCCATGGTAATGGAGGAACTGATTGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCATATAATGAGGTTTTCCATGGTAATGGAGGAACTGATTGAGCT  400

seq1  AGGTGATGAGACTTTTGGAGTGAGCTGAAGAATACAAAATGTATTTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATGAGACTTTTGGAGTGAGCTGAAGAATACAAAATGTATTTGTGG  450

seq1  AAGCAAGAATGATTCCAGTTAGAGAAAAGTGCCTATGCAAATGACAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAATGATTCCAGTTAGAGAAAAGTGCCTATGCAAATGACAGATG  500

seq1  CAGAACGGAAACTCTGATATATTGGCTGAATGAAAATCAAAGTAAATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACGGAAACTCTGATATATTGGCTGAATGAAAATCAAAGTAAATCAG  550

seq1  CTTGTCTGGAATATGCAGTAGATAGAAAGCTGTCAATACCCTTCCTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGGAATATGCAGTAGATAGAAAGCTGTCAATACCCTTCCTTTGC  600

seq1  ACATCACTGAGACTTATCCATACTGGGATAAGATATTTAATGGAATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACTGAGACTTATCCATACTGGGATAAGATATTTAATGGAATAAAT  650

seq1  TGTTTATAAAGAATATACCCCAAAAATTTCCAACATATAACAAGGACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATAAAGAATATACCCCAAAAATTTCCAACATATAACAAGGACACA  700

seq1  TGCTCTACTATGTCCATAGCAGCTTTATTCATAATAGCCAGAAGCTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTACTATGTCCATAGCAGCTTTATTCATAATAGCCAGAAGCTGGAA  750

seq1  ACAACCCAGATGTCCCTCAACAAAGGAATGAATACAGAAAATATGGTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCAGATGTCCCTCAACAAAGGAATGAATACAGAAAATATGGTACA  800

seq1  TATTCACAATGGAGTACTACTGAGTGATTAAAAACAATGAA-TTTATGAA  849
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  TATTCAC-ATGGAGTACTACTGAGTGATTAAAAACAATGAATTTTATGAA  849

seq1  ATCAACAGGCAAATGGATGGAAATAGAAAATATCATCCCAAACCCTGCAC  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCAACAGGCAAATGGATGGAAATAGAAAATATCATCCC-AACCCTGCAC  898

seq1  AGAAGAACACACATGGTATGTACTTGCTGATTAGTGGATATAAGCCCAAA  949
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  AGAAGAACACACATGGTATGTACTTGCTGATTAGTGGATATAGGCCC-AA  947

seq1  ATGCCCATGGTTCAATCCACAGACCTTATAGAATTTACGAGGAAGGAAGG  999
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  ATGCCCATGG-TCAATCCACAGACCTTATAG-ATTTACGAGGAAGGAAGG  995

seq1  TCAG--AGGGTGGATGCTTCAGTCCTACCTT-GAGAAGAAGAGAACAGGA  1046
      ||||   |||||||||||||||| ||||||| ||||||||||||||||||
seq2  TCAGGAGGGGTGGATGCTTCAGTTCTACCTTGGAGAAGAAGAGAACAGGA  1045

seq1  TCAT-AACAGGAGGAGG-AAGGAGGAGA-GGGGGACCTGG  1083
      |||| |||||||||||| |||||||||| ||||||||| |
seq2  TCATAAACAGGAGGAGGAAAGGAGGAGAGGGGGGACCTTG  1085