BAC Information

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BAC

Clone NameB6Ng01-103K04
Chromosome8 (Build37)
Map Location 86,333,814 - 86,451,994
singlet/doubletdoublet
Overlap geneEG384857, Lphn1
Upstream geneRnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97
Downstream geneAsf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103K04.bB6Ng01-103K04.g
ACCDH912163DH912164
length1,1541,089
definitionDH912163|Mus musculus domesticus DNA, BAC clone: B6Ng01-103K04, 5' end.DH912164|Mus musculus domesticus DNA, BAC clone: B6Ng01-103K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,333,814 - 86,334,983)(86,450,885 - 86,451,994)
sequence
gaattcaaggccagcctgcgctacagagtgagagttccaggacagtcaga
gttacacagaaaaaccctgtctcaaacaataaatctagatttattagcct
gcatccccaccgccgtcctcaggctgaagtatcccaggctagtctaaaac
taggtgggttcttagctttgaagaaaggcagcatggcagtctcctgcagc
agcattgtgggtcctctcacaggggagagggctcctgagccattagctgg
tgagtggcccacagaggagcttgcgtcatagagtagggctcccttaggcc
agttctcctggctgttgcagaagcatggctgaggtctctcattctctgga
ctgtacagattatagagaatagtatcattgagtagcttatatgctctcta
acctgggagcttgcaaagccctgtagtttaacagcatgcacgtgggctat
attagactatgcatgtagctggcctcagcttcttttattaaggtggcatt
acacagcaccttcctctaagccaaacaactgctggcttcatatgaccagc
tgcttctgcttttaaaggaccgtcatgggctggagagatggctcaacagt
tcttacaggggactggggttcaagtcccagcactcacatgtcagctcaca
accatctgaaactcccattccagcagatctggtgccctcttctgacctcc
ttagaccccaggcacacccttgttgcatatatgcatgcatgcatgcatac
atacatacataacaggcaaaaactttatacatgtagaattacataaatct
aaaacctaaaaagatcatcaccactggagattctgactattcatgttcct
acacggaggagggcgtggcagggtcactggccctcactgagtatctgcct
ctcctcccagccagctgtgtgcagttctgctctaactgcccttggccttg
agatctggggagagctggggtataaggcaggggaagactagaagagggct
atgaagctgtgtggagccattgtcattctgatgcagactttcccagtgtg
gcttagttggtcatcagctctttcaggaagcctctgccatgccctgtgag
taagacttcaaagtcatttgtccctaggtaactttgaatttgtcttggga
gata
gaattctctgctcctgcttggttcatcaccaaagcagttagccccagggg
cacagggagggctgagatgacttggtaccagcatggtgggcagcctcagt
ttgtgagggacccctgggtaggagccaggtttagtgcctagttactcagc
aggctagcatggttggggaatgtgtaagctgggtctctcccttcacagca
ctggggcagcttggcaccaggtcactaggcgcaaggcagccagtaacaca
gccctggcgttcctgtcagctttatctgtaccctctgaccagactacctg
gcccccaccctttttttttcctgttccccaggtctttcctctgtcccaca
gaaacccttgccagggtgtgtgttcatgaagagggcctgagctagtcaga
gggtaccagtggagaaaaacacagttagaggtcattccaaggaagggggg
aagatgaggaagggtctgccaggggccttgggcagcaaggacccctcctc
agcacccagctcccacacacctcttccctccctcagcccaaccggagagg
agatccagtggcgtagttccaagcctgcaagaagagtggctagtgcaggg
ccgactcgactcaggagagcaagggagggacggtgcccaggcctctgaga
tgggcaaggtgggaaggaaagggaggggagcagctcagagggaccccgcc
cacctccccggtaggggagcctccacagaccaccttaatttcaaggctag
agggaccctgaaagggccatctcactgttgatggcttcctgccctactac
tagcaggccactctccactccctggcgtaatggatagcctcatccaccgc
cgccatggggctctctgcagaaattatggggcctgtggaagtccccagag
caagtctgtgaccccccaccgccctccctggtctctcagtctgaagaaac
cctgactgcagctttgcagtgtgcagagacagaccactccgcctcctcag
aggctgcccattctcattccaagtttgtagctgctccttccaggactgga
tagctgacaacccttcccagtactagaccgactggtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86333814_86334983
seq2: B6Ng01-103K04.b_46_1199

seq1  GAATTCAAGGCCAGCCTGCGCTACAGAGTGAGAGTTCCAGGACAGTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGCGCTACAGAGTGAGAGTTCCAGGACAGTCAGA  50

seq1  GTTACACAGAAAAACCCTGTCTCAAACAATAAATCTAGATTTATTAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACAGAAAAACCCTGTCTCAAACAATAAATCTAGATTTATTAGCCT  100

seq1  GCATCCCCACCGCCGTCCTCAGGCTGAAGTATCCCAGGCTAGTCTAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCCACCGCCGTCCTCAGGCTGAAGTATCCCAGGCTAGTCTAAAAC  150

seq1  TAGGTGGGTTCTTAGCTTTGAAGAAAGGCAGCATGGCAGTCTCCTGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGGTTCTTAGCTTTGAAGAAAGGCAGCATGGCAGTCTCCTGCAGC  200

seq1  AGCATTGTGGGTCCTCTCACAGGGGAGAGGGCTCCTGAGCCATTAGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTGGGTCCTCTCACAGGGGAGAGGGCTCCTGAGCCATTAGCTGG  250

seq1  TGAGTGGCCCACAGAGGAGCTTGCGTCATAGAGTAGGGCTCCCTTAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCCCACAGAGGAGCTTGCGTCATAGAGTAGGGCTCCCTTAGGCC  300

seq1  AGTTCTCCTGGCTGTTGCAGAAGCATGGCTGAGGTCTCTCATTCTCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCCTGGCTGTTGCAGAAGCATGGCTGAGGTCTCTCATTCTCTGGA  350

seq1  CTGTACAGATTATAGAGAATAGTATCATTGAGTAGCTTATATGCTCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGATTATAGAGAATAGTATCATTGAGTAGCTTATATGCTCTCTA  400

seq1  ACCTGGGAGCTTGCAAAGCCCTGTAGTTTAACAGCATGCACGTGGGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAGCTTGCAAAGCCCTGTAGTTTAACAGCATGCACGTGGGCTAT  450

seq1  ATTAGACTATGCATGTAGCTGGCCTCAGCTTCTTTTATTAAGGTGGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACTATGCATGTAGCTGGCCTCAGCTTCTTTTATTAAGGTGGCATT  500

seq1  ACACAGCACCTTCCTCTAAGCCAAACAACTGCTGGCTTCATATGACCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCACCTTCCTCTAAGCCAAACAACTGCTGGCTTCATATGACCAGC  550

seq1  TGCTTCTGCTTTTAAAGGACCGTCATGGGCTGGAGAGATGGCTCAACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGCTTTTAAAGGACCGTCATGGGCTGGAGAGATGGCTCAACAGT  600

seq1  TCTTACAGGGGACTGGGGTTCAAGTCCCAGCACTCACATGTCAGCTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGGGGACTGGGGTTCAAGTCCCAGCACTCACATGTCAGCTCACA  650

seq1  ACCATCTGAAACTCCCATTCCAGCAGATCTGGTGCCCTCTTCTGACCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGAAACTCCCATTCCAGCAGATCTGGTGCCCTCTTCTGACCTCC  700

seq1  TTAGACCCCAGGCACACCCTTGTTGCATATATGCATGCATGCATGCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCCCAGGCACACCCTTGTTGCATATATGCATGCATGCATGCATAC  750

seq1  ATACATACATAACAGGCAAAAACTTTATACATGTAGAATTACATAAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATAACAGGCAAAAACTTTATACATGTAGAATTACATAAATCT  800

seq1  AAAACCTAAAAAGATCATCACCACTGGAGATTCTGACTATTCATGTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTAAAAAGATCATCACCACTGGAGATTCTGACTATTCATGTTCCT  850

seq1  ACACGGAGGAGGGCGTGGCAGGGTCACTGGCCCTCACTGAGTATCTGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACACGGAGGAGGGCGTGGCAGGGTCACTGGCCCTCACTGAGTATCTGCCT  900

seq1  CTCCTCCCAGCCAGCTGTGTGCAGTTCTGCTCTAACTGCACTTGGCCTTG  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCCTCCCAGCCAGCTGTGTGCAGTTCTGCTCTAACTGCCCTTGGCCTTG  950

seq1  AGATCTTGGGGAGGAGCTGGGGTATAAAGGCAGGGGAAGACTAGAAAGAG  1000
      ||||| |||||| |||||||||||| |||||||||||||||||| |||||
seq2  AGATC-TGGGGA-GAGCTGGGGTAT-AAGGCAGGGGAAGACTAG-AAGAG  996

seq1  GGCCTATGAAGCTGTGGGGAGCCATTGTCCATTCTGAATGCAGAC-TTCC  1049
      || ||||||||||||| ||||||||||| ||||||| |||||||| ||||
seq2  GG-CTATGAAGCTGTGTGGAGCCATTGT-CATTCTG-ATGCAGACTTTCC  1043

seq1  CAGTGTGGCTTTAGGTTGGTCATCCAGGCTCTTGTCAGGAAGCCCTCTGC  1099
      |||||||||||   ||||||||||   |||||| |||||||| |||||||
seq2  CAGTGTGGCTT--AGTTGGTCATC--AGCTCTT-TCAGGAAG-CCTCTGC  1087

seq1  CATGCCCTGTGAGTAAGACCTACAAAGTCATTTGTCCCCCAGGGTGAACT  1149
      |||||||||||||||||| || ||||||||||||| ||| |||   ||||
seq2  CATGCCCTGTGAGTAAGA-CTTCAAAGTCATTTGT-CCCTAGG--TAACT  1133

seq1  TTG-ATTTGTCACTGGGAGATA  1170
      ||| |||||||  |||||||||
seq2  TTGAATTTGTC-TTGGGAGATA  1154

seq1: chr8_86450885_86451994
seq2: B6Ng01-103K04.g_68_1156 (reverse)

seq1  CTGACCAGTCGGGTCTAGTACTGGGGAGGGTTGTCAGCTATCCCAGTCCC  50
      |||||||||| |||||||||||||| ||||||||||||||| ||||||| 
seq2  CTGACCAGTC-GGTCTAGTACTGGGAAGGGTTGTCAGCTAT-CCAGTCC-  47

seq1  CTGGGAGGGGGCAGCCTACCAAAACCCTGGGATGGGGGTTGGGGCGGGCT  100
         ||| || |||| ||||   || | ||| ||| |  |  |||| | ||
seq2  --TGGAAGGAGCAG-CTAC---AAACTTGGAATGAGAAT--GGGCAGCCT  89

seq1  TCCTGGAGAGGGCGGGAGTGGGTTCTGTCTCTGCACACTTGCAAAGCTGC  150
        |||  ||||   |||||||  ||||||||||||||| |||||||||||
seq2  --CTGAGGAGG--CGGAGTGG--TCTGTCTCTGCACAC-TGCAAAGCTGC  132

seq1  AGTCAGGGTTTCTTCCGGGCTGAGAGGACCAGGGAGGGGCGGTGGGGGGT  200
      |||||||||||||| | | |||||| ||||||||| ||||||||||||||
seq2  AGTCAGGGTTTCTT-CAGACTGAGA-GACCAGGGA-GGGCGGTGGGGGGT  179

seq1  CACAGACTTGCTCTGGGGACTTCCACAGGCCCCATAATTTCTTGCAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACAGACTTGCTCTGGGGACTTCCACAGGCCCCATAATTTC-TGCAGAGA  228

seq1  GCCCCATGGCGGCGGTGGATGAGGCTATCCATTACGCCAGGGAGTGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCCCATGGCGGCGGTGGATGAGGCTATCCATTACGCCAGGGAGTGGAGA  278

seq1  GTGGCCTGCTAGTAGTAGGGCAGGAAGCCATCAACAGTGAGATGGCCC-T  349
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGGCCTGCTAGTAGTAGGGCAGGAAGCCATCAACAGTGAGATGGCCCTT  328

seq1  TCAGGGTCCCTCTAGCCTTGAAATTAAGGTGGTCTGTGGAGGCTCCCCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCCCTCTAGCCTTGAAATTAAGGTGGTCTGTGGAGGCTCCCCTA  378

seq1  CCGGGGAGGTGGGCGGGGTCCCTCTGAGCTGCTCCCCTCCCTTTCCTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGAGGTGGGCGGGGTCCCTCTGAGCTGCTCCCCTCCCTTTCCTTCC  428

seq1  CACCTTGCCCATCTCAGAGGCCTGGGCACCGTCCCTCCCTTGCTCTCCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGCCCATCTCAGAGGCCTGGGCACCGTCCCTCCCTTGCTCTCCTG  478

seq1  AGTCGAGTCGGCCCTGCACTAGCCACTCTTCTTGCAGGCTTGGAACTACG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAGTCGGCCCTGCACTAGCCACTCTTCTTGCAGGCTTGGAACTACG  528

seq1  CCACTGGATCTCCTCTCCGGTTGGGCTGAGGGAGGGAAGAGGTGTGTGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGATCTCCTCTCCGGTTGGGCTGAGGGAGGGAAGAGGTGTGTGGG  578

seq1  AGCTGGGTGCTGAGGAGGGGTCCTTGCTGCCCAAGGCCCCTGGCAGACCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGTGCTGAGGAGGGGTCCTTGCTGCCCAAGGCCCCTGGCAGACCC  628

seq1  TTCCTCATCTTCCCCCCTTCCTTGGAATGACCTCTAACTGTGTTTTTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATCTTCCCCCCTTCCTTGGAATGACCTCTAACTGTGTTTTTCTC  678

seq1  CACTGGTACCCTCTGACTAGCTCAGGCCCTCTTCATGAACACACACCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTACCCTCTGACTAGCTCAGGCCCTCTTCATGAACACACACCCTG  728

seq1  GCAAGGGTTTCTGTGGGACAGAGGAAAGACCTGGGGAACAGGAAAAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGTTTCTGTGGGACAGAGGAAAGACCTGGGGAACAGGAAAAAAAA  778

seq1  AGGGTGGGGGCCAGGTAGTCTGGTCAGAGGGTACAGATAAAGCTGACAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGGGCCAGGTAGTCTGGTCAGAGGGTACAGATAAAGCTGACAGG  828

seq1  AACGCCAGGGCTGTGTTACTGGCTGCCTTGCGCCTAGTGACCTGGTGCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCAGGGCTGTGTTACTGGCTGCCTTGCGCCTAGTGACCTGGTGCCA  878

seq1  AGCTGCCCCAGTGCTGTGAAGGGAGAGACCCAGCTTACACATTCCCCAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCCCAGTGCTGTGAAGGGAGAGACCCAGCTTACACATTCCCCAAC  928

seq1  CATGCTAGCCTGCTGAGTAACTAGGCACTAAACCTGGCTCCTACCCAGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAGCCTGCTGAGTAACTAGGCACTAAACCTGGCTCCTACCCAGGG  978

seq1  GTCCCTCACAAACTGAGGCTGCCCACCATGCTGGTACCAAGTCATCTCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCACAAACTGAGGCTGCCCACCATGCTGGTACCAAGTCATCTCAG  1028

seq1  CCCTCCCTGTGCCCCTGGGGCTAACTGCTTTGGTGATGAACCAAGCAGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTGTGCCCCTGGGGCTAACTGCTTTGGTGATGAACCAAGCAGGA  1078

seq1  GCAGAGAATTC  1110
      |||||||||||
seq2  GCAGAGAATTC  1089