BAC Information

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BAC

Clone NameB6Ng01-103N19
Chromosome1 (Build37)8 (Build37)
Map Location 87,711,033 - 87,711,18583,391,688 - 83,392,776
singlet/doubletsingletsinglet
Overlap geneCab39
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik
Downstream geneItm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103N19.bB6Ng01-103N19.g
ACCDH912324DH912325
length7471,083
definitionDH912324|Mus musculus domesticus DNA, BAC clone: B6Ng01-103N19, 5' end.DH912325|Mus musculus domesticus DNA, BAC clone: B6Ng01-103N19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,711,033 - 87,711,185)(83,391,688 - 83,392,776)
sequence
gaattccttctgtgttagccatctacagctgggcagggggcctactcctg
agtggtttccccagtgacacttgaagaaaactaatttttcatttccaagt
agtatcagttggagttagcttctggttagggattggtggggggtgtccac
ttctctcagctctaagaccccataagagacgcagaccagtatatgccccg
tgcatgccgccccaatctgaaccaaaggctctcaaccatcctaatgctga
cctttttgttcctcgcgctgtggtaacccctaaccacaaaactctgttca
ttgctacttcacagctgtaatgttactactgttatgaatgataatgtagg
ggtggggatttagctcagtggtgaagtgcttgccagagtgttcagtcctc
agctcctggggtccagggggagggagaatgtattgtaatgtaaatattca
tgttttccaatcagtgttcaggctaccactgtgaaagagtcattcaacac
ctcaaaacacacacacacacacacacacacacacacacacacactaaggg
gtcaccacccactggttgaggaccactggtttagaaagtcttgtcatgtt
gtgacccccatccctctggccctttgacactttccatgtcctcttcagaa
gtccctgatccctgaggggtggaatttggtggagacatcccatttagagc
tgagtattcctctctctctctctctccctctctctctctctccctct
gaattcctccttgccctagataggtgtctattcttaaaacaaaaaacaaa
atccccaacatcctaaaaaggaggtgaggaccaaattgccacattgtttt
ttgaatttaaaacaatatactaaagtctaaacatttcttttcaatttaaa
aatatcccccccccgtttttttttatttaaaggaagaaaaatactaacct
tagctttaactatattattgtgtttccttcctccctttttgtttattttc
ttttgctttgactcagctcaagtccagctcgatgcagtcttctggtcgtc
tccagagtatggagcacatggagactaacaatggcggccccactggctgt
caggagagaggcctgacctctgaagagaagggggatgatatcacaaagca
aagaaggctttattgtgtcctctcgtgacactaaattgaattatcttagc
attattagaacactacaagaagtaagcagataaatggaattgtattcctt
taaaaatactttagatttattgatgtagttttacatggatggatgtttgc
tggagctgtttgtctgtgccaccagtacatgtgtgcccagtgtgcagcag
tggcgtgtagaagaggcaatcgggtcatctggtctggcgtccttgatagc
tgtgaagcacctgtcgtgcaggtgctgggaacggaacctgggacccctga
agagcagtaagtggtcctaagtgttgtaccaccgctctgggtaaccgtaa
ttttggttaggaggtctgctttctctgatagatactgactgttgcactag
gattttttttttttttgatagcttgacttatttttgttgtcgtttctgtt
gtatttaatgctttggcttgcctgttgctgtcaaatggtttttaccagag
aaaagtaagtctgtccctgttgctggagtcctcagcctctgctcttaact
tgtgctactactgtaaggtagccaggactggagtagtggcggtactttac
tcagtaggcagctgcttcatcagtctgctacatggctttagttaccagtg
catggaaatgttgcgggtctactctgactccgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87711033_87711185
seq2: B6Ng01-103N19.b_553_795 (reverse)

seq1  AGAGAGAGAGAGAGAGGGAGGGAGAGAGAGAGAGAGAGGGA---------  41
      |||| ||||||||||| |||||||||||||||||||||| |         
seq2  AGAGGGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGGAATACTCAGCT  50

seq1  ------GGGA--------------------------GAAAGAGAGA----  55
            ||||                          | |  || ||    
seq2  CTAAATGGGATGTCTCCACCAAATTCCACCCCTCAGGGATCAGGGACTTC  100

seq1  --GAGA-GAGAGGTAATGTG-CACATGTCTCAG------GGGAGACACAG  95
         ||| || | | || ||| || | | | |||      ||| | |||| 
seq2  TGAAGAGGACATGGAAAGTGTCAAAGGGC-CAGAGGGATGGGGGTCACAA  149

seq1  AATGAGGAG-----------------------------GAGAGGTG----  112
       ||||  ||                             | | ||||    
seq2  CATGACAAGACTTTCTAAACCAGTGGTCCTCAACCAGTGGGTGGTGACCC  199

seq1  ---TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT  153
          ||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT  243

seq1: chr8_83391688_83392776
seq2: B6Ng01-103N19.g_69_1151 (reverse)

seq1  GCGGAGTCAGAAGTAGCCCGGCCACATTTCCCAATGCACTGGTAACTAAG  50
      |||||||||| ||||| || || ||||||||  |||||||||||||||| 
seq2  GCGGAGTCAG-AGTAGACCCGCAACATTTCC--ATGCACTGGTAACTAAA  47

seq1  GCCATGTAGCAGACTGGATGAAGCAAGCTGCCTACTGAGTAAAGTTACCG  100
      ||||||||||||||| |||||||| ||||||||||||||||||| |||||
seq2  GCCATGTAGCAGACT-GATGAAGC-AGCTGCCTACTGAGTAAAG-TACCG  94

seq1  CCACTACTCCAGTCTTGGCTACCTTACAGTAGTAGCACAAGTTAAGAGCA  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCACTACTCCAGTCCTGGCTACCTTACAGTAGTAGCACAAGTTAAGAGCA  144

seq1  GAGGGCTGAGGACTCCAGCAACAGGGACAGACTTACTTTTCTCTGGTAAA  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-GGCTGAGGACTCCAGCAACAGGGACAGACTTACTTTTCTCTGGTAAA  193

seq1  AACCATTTGACAGCAACAGGCAAGCCAAAGCATTAAATACAACAGAAACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTGACAGCAACAGGCAAGCCAAAGCATTAAATACAACAGAAACG  243

seq1  ACAACAAAAATAAGTCAAGCTATC-AAAAAAAAAAAAATCCTAGTGCAAC  299
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACAACAAAAATAAGTCAAGCTATCAAAAAAAAAAAAAATCCTAGTGCAAC  293

seq1  AGTCAGTATCTATCAGAGAAAGCAGACCTCCTAACCAAAATTACGGTTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTATCTATCAGAGAAAGCAGACCTCCTAACCAAAATTACGGTTAC  343

seq1  CCAGAGCGGTGGTACAACACTTAGGACCACTTACTGCTCTTCAGGGGTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCGGTGGTACAACACTTAGGACCACTTACTGCTCTTCAGGGGTCC  393

seq1  CAGGTTCCGTTCCCAGCACCTGCACGACAGGTGCTTCACAGCTATCAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCCGTTCCCAGCACCTGCACGACAGGTGCTTCACAGCTATCAAGG  443

seq1  ACGCCAGACCAGATGACCCGATTGCCTCTTCTACACGCCACTGCTGCACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAGACCAGATGACCCGATTGCCTCTTCTACACGCCACTGCTGCACA  493

seq1  CTGGGCACACATGTACTGGTGGCACAGACAAACAGCTCCAGCAAACATCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCACACATGTACTGGTGGCACAGACAAACAGCTCCAGCAAACATCC  543

seq1  ATCCATGTAAAACTACATCAATAAATCTAAAGTATTTTTAAAGGAATACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGTAAAACTACATCAATAAATCTAAAGTATTTTTAAAGGAATACA  593

seq1  ATTCCATTTATCTGCTTACTTCTTGTAGTGTTCTAATAATGCTAAGATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTTATCTGCTTACTTCTTGTAGTGTTCTAATAATGCTAAGATAA  643

seq1  TTCAATTTAGTGTCACGAGAGGACACAATAAAGCCTTCTTTGCTTTGTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTAGTGTCACGAGAGGACACAATAAAGCCTTCTTTGCTTTGTGA  693

seq1  TATCATCCCCCTTCTCTTCAGAGGTCAGGCCTCTCTCCTGACAGCCAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCCCCTTCTCTTCAGAGGTCAGGCCTCTCTCCTGACAGCCAGTG  743

seq1  GGGCCGCCATTGTTAGTCTCCATGTGCTCCATACTCTGGAGACGACCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGCCATTGTTAGTCTCCATGTGCTCCATACTCTGGAGACGACCAGA  793

seq1  AGACTGCATCGAGCTGGACTTGAGCTGAGTCAAAGCAAAAGAAAATAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCATCGAGCTGGACTTGAGCTGAGTCAAAGCAAAAGAAAATAAAC  843

seq1  AAAAAGGGAGGAAGGAAACACAATAATATAGTTAAAGCTAAGGTTAGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGAGGAAGGAAACACAATAATATAGTTAAAGCTAAGGTTAGTAT  893

seq1  TTTTCTTCCTTTAAATAAAAAAAAACGGGGGGGGGATATTTTTAAATTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCTTTAAATAAAAAAAAACGGGGGGGGGATATTTTTAAATTGA  943

seq1  AAAGAAATGTTTAGACTTTAGTATATTGTTTTAAATTCAAAAAACAATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGTTTAGACTTTAGTATATTGTTTTAAATTCAAAAAACAATGT  993

seq1  GGCAATTTGGTCCTCACCTCCTTTTTAGGATGTTGGGGATTTTGTTTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTTGGTCCTCACCTCCTTTTTAGGATGTTGGGGATTTTGTTTTTT  1043

seq1  GTTTTAAGAATAGACACCTATCTAGGGCAAGGAGGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAGAATAGACACCTATCTAGGGCAAGGAGGAATTC  1083