BAC Information

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BAC

Clone NameB6Ng01-104H11
Chromosome8 (Build37)
Map Location 80,554,689 - 80,703,341
singlet/doubletdoublet
Overlap geneEG622803
Upstream geneNr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
Downstream geneTtc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6, EG666340, EG666346, D630040G17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104H11.bB6Ng01-104H11.g
ACCDH912757DH912758
length9401,130
definitionDH912757|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H11, 5' end.DH912758|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,702,756 - 80,703,341)(80,554,689 - 80,555,837)
sequence
gaattcaaggctggatagactgaactgaactgacttaaggctgcctaaag
cactgcaatcatgaggacctgacttggattctgcagacataattccaaag
ctggtgaaccagtgacaggctgatccctggggtcactgcacagctaacct
caagttcatgtgtgccaggctgcagagagaccctgcctcaaaattcaggg
tagatagctcttaagaaatgacgcagggcctgtattctgatctccatatg
cacccacagattcatgtgaaacacacctgcccccaacagcaacaacaaca
acaaaaacacatctagaaatgcagaagcaagccatgagaactaagaacat
acttgtgcattgtaggcttatgatggatgtctggctacttgtggtggtcc
atgcatttaatgctagcacccaagaggcagaggcaaacacatctctgagt
attcaaggtcaacctggttgagattgtgagtttcaggccagccagagcta
cacagtaagactctgtctcaaacaaacagaaagaaaataggcatatttag
aaatgaaaacaattcctataaataatttgttaaaaataaatagctcaatc
taaaaattggaccaaagttttcaacacacttcccaaatgaaagtatagaa
atgcccaattaaaaacatcaaaaactgtttaaatgttgctggttggtggt
caggaaaatgtaaatttcagctgtaaagaagtatggcttccaactcacta
aaatcagtaagaagttttataaagcaaataacacaaatattcatgaagat
gtcaagccactgggatgcttatccattgcgagctggaaaggaaaaccatt
tcaaccaagctgggaaaaacccttttgctatttcagataaacctaacgac
ctgtcttacaacttcagcaactcttattgacagcatttac
gaattcatttggttactgtctgtgtctaataattttaaactttgatctcc
atctagctagtgtggcaatgggctcatcatatcccttttggttaaactct
ttggcttccaggcctaattagcacatttttttttctattgctgaaacaaa
acagaaatgacctttcttcaaaccccccccccccccacacacacacagaa
tgttcaccagaaggaaaactggatctcaacgtagaggaagacttggtcta
gccaaggtccactttcgctttgaaactgccaggctccttctgcctctggc
ctgtggctcactcctttcaccactcgctcacagtggcgtttgagtggtgg
agctttgaaagtgtcaatgcccccatttgaaactttgcacttgaatcaaa
ttagagctggaagttgtccaaagcttagttgggtagagcctcatcgatgt
ggttttaatatttcaaattcaggacgtttctggtgcttgctgtacaacaa
aacacaggtgaagaggatttagaggacgcttatgcagaggagggtggcct
cacaaatatttgttgagtaaacacttgtgtcactctgacaaaacgtctga
gagaaataacttagaggaagaagggttaggtctttcctgaggctaaaggg
atttcagtgtgtggtccttagctctggggattctgggcccacgattagat
aaagcatcattcagatgtggtaggagctgttcgattcctgactgatcgga
tgcagagtgtgtgaggaagtgactagggtttggacacctttcaagccctg
ccataaagatctatgtcttatacctaggtggtgcttttcttcattcttca
caatcacgtagtgcagcagcactagcaaggcatcaggtgttcaataagtg
ggcctgggggtagaggtgcattcactacagtcacaactcaggacacacac
acacacacacacacacacacacacacacacacggaacatgtgtttgtact
ttaacttatacatttaggtgctgaccagaaatactggatagacctaaagt
aatgcagtcattatattacctaaaataaaatactattctttattcctctt
gtccacgtcgcctcttttcactgcactcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_80702756_80703341
seq2: B6Ng01-104H11.b_33_618 (reverse)

seq1  TTTTTAACAAATTATTTATAGGAATTGTTTTCATTTCTAAATATGCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACAAATTATTTATAGGAATTGTTTTCATTTCTAAATATGCCTAT  50

seq1  TTTCTTTCTGTTTGTTTGAGACAGAGTCTTACTGTGTAGCTCTGGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTGTTTGTTTGAGACAGAGTCTTACTGTGTAGCTCTGGCTGGC  100

seq1  CTGAAACTCACAATCTCAACCAGGTTGACCTTGAATACTCAGAGATGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTCACAATCTCAACCAGGTTGACCTTGAATACTCAGAGATGTGT  150

seq1  TTGCCTCTGCCTCTTGGGTGCTAGCATTAAATGCATGGACCACCACAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTGCCTCTTGGGTGCTAGCATTAAATGCATGGACCACCACAAGT  200

seq1  AGCCAGACATCCATCATAAGCCTACAATGCACAAGTATGTTCTTAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGACATCCATCATAAGCCTACAATGCACAAGTATGTTCTTAGTTCT  250

seq1  CATGGCTTGCTTCTGCATTTCTAGATGTGTTTTTGTTGTTGTTGTTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTTGCTTCTGCATTTCTAGATGTGTTTTTGTTGTTGTTGTTGCTG  300

seq1  TTGGGGGCAGGTGTGTTTCACATGAATCTGTGGGTGCATATGGAGATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCAGGTGTGTTTCACATGAATCTGTGGGTGCATATGGAGATCAG  350

seq1  AATACAGGCCCTGCGTCATTTCTTAAGAGCTATCTACCCTGAATTTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGGCCCTGCGTCATTTCTTAAGAGCTATCTACCCTGAATTTTGAG  400

seq1  GCAGGGTCTCTCTGCAGCCTGGCACACATGAACTTGAGGTTAGCTGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTCTCTCTGCAGCCTGGCACACATGAACTTGAGGTTAGCTGTGCA  450

seq1  GTGACCCCAGGGATCAGCCTGTCACTGGTTCACCAGCTTTGGAATTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCCAGGGATCAGCCTGTCACTGGTTCACCAGCTTTGGAATTATGT  500

seq1  CTGCAGAATCCAAGTCAGGTCCTCATGATTGCAGTGCTTTAGGCAGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAATCCAAGTCAGGTCCTCATGATTGCAGTGCTTTAGGCAGCCTT  550

seq1  AAGTCAGTTCAGTTCAGTCTATCCAGCCTTGAATTC  586
      ||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGTTCAGTTCAGTCTATCCAGCCTTGAATTC  586

seq1: chr8_80554689_80555837
seq2: B6Ng01-104H11.g_69_1198

seq1  GAATTCATTTGGTTACTGTCTGTGTCTAATAATTTTAAACTTTGATCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGTTACTGTCTGTGTCTAATAATTTTAAACTTTGATCTCC  50

seq1  ATCTAGCTAGTGTGGCAATGGGCTCATCATATCCCTTTTGGTTAAACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCTAGTGTGGCAATGGGCTCATCATATCCCTTTTGGTTAAACTCT  100

seq1  TTGGCTTCCAGGCCTAATTAGCACATTTTTTTTTCTATTGCTGAAACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCCAGGCCTAATTAGCACATTTTTTTTTCTATTGCTGAAACAAA  150

seq1  ACAGAAATGACCTTTCTTCAAA-CCCCCCCCCCCCCACACACACACAGAA  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACAGAAATGACCTTTCTTCAAACCCCCCCCCCCCCCACACACACACAGAA  200

seq1  TGTTCACCAGAAGGAAAACTGGATCTCAACGTAGAGGAAGACTTGGTCTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACCAGAAGGAAAACTGGATCTCAACGTAGAGGAAGACTTGGTCTA  250

seq1  GCCAAGGTCCACTTTCGCTTTGAAACTGCCAGGCTCCTTCTGCCTCTGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGTCCACTTTCGCTTTGAAACTGCCAGGCTCCTTCTGCCTCTGGC  300

seq1  CTGTGGCTCACTCCTTTCACCACTCGCTCACAGTGGCGTTTGAGTGGTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTCACTCCTTTCACCACTCGCTCACAGTGGCGTTTGAGTGGTGG  350

seq1  AGCTTTGAAAGTGTCAATGCCCCCATTTGAAACTTTGCACTTGAATCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGAAAGTGTCAATGCCCCCATTTGAAACTTTGCACTTGAATCAAA  400

seq1  TTAGAGCTGGAAGTTGTCCAAAGCTTAGTTGGGTAGAGCCTCATCGATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCTGGAAGTTGTCCAAAGCTTAGTTGGGTAGAGCCTCATCGATGT  450

seq1  GGTTTTAATATTTCAAATTCAGGACGTTTCTGGTGCTTGCTGTACAACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAATATTTCAAATTCAGGACGTTTCTGGTGCTTGCTGTACAACAA  500

seq1  AACACAGGTGAAGAGGATTTAGAGGACGCTTATGCAGAGGAGGGTGGCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGTGAAGAGGATTTAGAGGACGCTTATGCAGAGGAGGGTGGCCT  550

seq1  CACAAATATTTGTTGAGTAAACACTTGTGTCACTCTGACAAAACGTCTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATATTTGTTGAGTAAACACTTGTGTCACTCTGACAAAACGTCTGA  600

seq1  GAGAAATAACTTAGAGGAAGAAGGGTTAGGTCTTTCCTGAGGCTAAAGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATAACTTAGAGGAAGAAGGGTTAGGTCTTTCCTGAGGCTAAAGGG  650

seq1  ATTTCAGTGTGTGGTCCTTAGCTCTGGGGATTCTGGGCCCACGATTAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTGTGTGGTCCTTAGCTCTGGGGATTCTGGGCCCACGATTAGAT  700

seq1  AAAGCATCATTCAGATGTGGTAGGAGCTGTTCGATTCCTGACTGATCGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCATTCAGATGTGGTAGGAGCTGTTCGATTCCTGACTGATCGGA  750

seq1  TGCAGAGTGTGTGAGGAAGTGACTAGGGTTTGGACACCTTTCAAGCCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGTGTGTGAGGAAGTGACTAGGGTTTGGACACCTTTCAAGCCCTG  800

seq1  CCATAAAGATCTATGTCTTATACCTAGGTGGTGC-TTTCTTCATTCTTCA  848
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCATAAAGATCTATGTCTTATACCTAGGTGGTGCTTTTCTTCATTCTTCA  850

seq1  CAATCACGTAGTGCAGCAGCACTAGCAAGGCATCAGGTGTTCAATAAGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACGTAGTGCAGCAGCACTAGCAAGGCATCAGGTGTTCAATAAGTG  900

seq1  GGCCTGGGGGTAGGAGGTGCAATTCACTACAAGTCACAACTCAAGGACAC  948
      |||||||||||| ||||||| ||||||||| ||||||||||| |||||||
seq2  GGCCTGGGGGTA-GAGGTGC-ATTCACTAC-AGTCACAACTC-AGGACAC  946

seq1  ACACACACACACACACACACACACACACACACACACGGAACATGTGTTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACGGAACATGTGTTTG  996

seq1  TACTTTAACTTATACATTTAAGGTTGCTGAACAGATATACTTGATAGACC  1048
      ||||||||||||||||||||  | |||||| |||| ||||| ||||||||
seq2  TACTTTAACTTATACATTTA--GGTGCTGACCAGAAATACTGGATAGACC  1044

seq1  TAAAGTAATGGCAGTCATTATAATTACTTTATAAATAAATATTACTATTC  1098
      ||||||||| ||||||||||| ||||| |   ||||||  | ||||||||
seq2  TAAAGTAAT-GCAGTCATTAT-ATTACCT--AAAATAA--AATACTATTC  1088

seq1  TTTATTCCCTCTTTGTCCACCTTTCGGGCTCTCTTTTCATCTGCATCTCA  1148
      |||||| |||| |||||||| |  |     ||||||||| ||||| ||||
seq2  TTTATT-CCTC-TTGTCCACGTCGC-----CTCTTTTCA-CTGCA-CTCA  1129

seq1  A  1149
      |
seq2  A  1130