BAC Information

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BAC

Clone NameB6Ng01-104I19
Chromosome8 (Build37)
Map Location 80,215,730 - 80,356,427
singlet/doubletdoublet
Overlap geneEdnra
Upstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34
Downstream geneEG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104I19.bB6Ng01-104I19.g
ACCDH912814DH912815
length1,1861,102
definitionDH912814|Mus musculus domesticus DNA, BAC clone: B6Ng01-104I19, 5' end.DH912815|Mus musculus domesticus DNA, BAC clone: B6Ng01-104I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,355,233 - 80,356,427)(80,215,730 - 80,216,833)
sequence
gaattcttcacagtttgggccccttcccagttactcttttatagtatggc
aagttaacaagttggtgacctgtacaaatcgagacacagctatttaatct
cttgcccgacattgcccttcttgatgcgatgctctgcagatctctgaaaa
agcccttactggctcagcagccaatcaatttagagaggtttttttttttt
ttcccctgggattttgttttgtttttgtttcctttctaatcgaggtgtga
aaaagttctaggttcagttgaagttcctggtgaagaaacacgattgagat
ttttttttcagtgataaaatctacatatttgtatttcaacaatgtagcta
aaatcttgatgtaaattcctcctttttccccttttgaacttaatgaatat
catttattcagaatgaaatctttacactatatgttccacgtgttaagaat
aaatgtacattaaatcttaaataaataaataaacaaacaaacaaacaaac
ttaggtacaatatgagacctcagggaagtctgttattttacgtgatacca
tgcactgcctttgtaaagtgacttttaaagataaattattttactaacaa
caaatgtatcatctttattattaaaccaagagtgtgttttataagattgg
atagtactcatgcactatttaaagggataaataaagacttaaaagaaaga
aagaaacaaaaaacaaaacaaaacaaaacaaaacaaaccagaaaatcatc
caccaagtaaaactttgcccaggtaaattctttcattcaataaacatcca
ctgaagggttttctaagctaaacattaagcaacaagcacaaggcagttgg
agttcctgctgtccacagagttgacattcaggggaaatggtgagtcctaa
gcaaataccagtggaattggtgttaagactttaaaggacagaggtgctaa
gatgacatctagagtattcctggggatgaggtatttagactgaagatctt
gagcttaagtgacacttcacaggaaagtgagccagctttatacgtaggca
ttagaccatcagcttaaagaagacttagaaagcattttttaaacccagga
aaggagaaggtaggtttggcaagtttggagaaatggagcatggccagagc
tcaggtcagccttgccacatgcaaatttttatccct
gaattcttatcttttgctagtgcggcctttcttgtttccctaccccaccc
cagtggggctggcttgccctgtgcttgctgcctctgccaggggtccagca
gcactccaggactgttactggcatcgagcgccagaggagggttatggaag
cagcagccacatgcactgggtaactacctctcatggcccctaagtcaggg
actactgttctggggctgctctgactgttgaggcccccagactcatggac
tgaggaatgggcgggttctcagcgtcccaggtgtgatttggccatcatgg
ttatttcctgtctgcgtggaggcggacagttccttccccatgccctgtcg
ttgtaatatgctgccttgctaccagctcaaggcagtgagtgaggtgaact
gaccataggttgcaacctctgaaactgggacctcagactgtcgtcttagc
caccgtgacctcaagaagggcctgcatgttaatctcgctctcccaagcac
tattagggtatgtggtaagctggcctgggagatactccagctccttctgt
cttagaaataacacaggtatagaagaattgtcatcatggaagcaaacagt
ctaactcacagatttttctttttaaatctcatttgtttatttattctctc
tctctctcctccctccctacctccattccttccttccccctctctcctac
tcttttctttcattatttcagctttccttgtttcttcccccccccccttt
tttttgggaaaacaggtatttctttcctattatttactaacacttaaaat
taaagctacgctgttttgaaatagtaaacataagctgtctaatgcttaga
taacaacaatcaaacagtgagtctaccacagcctgggattcctacccaaa
gggcacccttgctgatggtgatgtttctttcaggaaacttacatggtgca
cacttgggcttttttttaatcaatgggaacaaatattaaaaaatactttt
agaagttactgtgttctcatttctggagaaatttacggaaaggactattt
tctaaggcaagagtcttgtttggtaaaactttttgagagaccgtttaaac
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_80355233_80356427
seq2: B6Ng01-104I19.b_46_1231 (reverse)

seq1  AGGGATAAAAAATTTGCATGGTGGCAAGGGCTTCCACTCTGAGC-CTGGC  49
      |||||| |||||||||||| ||||||| ||||  |   |||||| |||||
seq2  AGGGAT-AAAAATTTGCAT-GTGGCAA-GGCTGAC---CTGAGCTCTGGC  44

seq1  CATGCCTCCATTTCTCCAAACTTGCC-AACCTACCTCTTCTTTTCCTTGG  98
      |||| ||||||||||||||||||||| |||||||||  || |||||| ||
seq2  CATG-CTCCATTTCTCCAAACTTGCCAAACCTACCTTCTCCTTTCCTGGG  93

seq1  TTT-TAATATGCTTTTCTCAGTTCTCTTT-AGCTGATGGTCTATTGCCTA  146
      |||  || |||| ||||| |||  ||||| ||||||||||||| ||||||
seq2  TTTAAAAAATGC-TTTCTAAGTCTTCTTTAAGCTGATGGTCTAATGCCTA  142

seq1  CGTATAAAGCTGGCTCACTTTCCTTGGTGAGTTGTCACCTAAGGCTC-AG  195
      ||||||||||||||||||||||||  ||||  |||||| ||| |||| ||
seq2  CGTATAAAGCTGGCTCACTTTCCT--GTGAAGTGTCACTTAA-GCTCAAG  189

seq1  ATC-TCAGTCTAAATACCTCATCCCCAGGAATACCTCTTAGATGTCATTC  244
      ||| ||||||||||||||||||||||||||||| ||| ||||||||| ||
seq2  ATCTTCAGTCTAAATACCTCATCCCCAGGAATA-CTC-TAGATGTCA-TC  236

seq1  TTAGCACCTCTGTCCTTTTAAAGTCTTAACACCAATTCCACTGGTATTTG  294
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTAGCACCTCTGTCC-TTTAAAGTCTTAACACCAATTCCACTGGTATTTG  285

seq1  CTTAGGACTCACCATTTCCCCTGAATGTCAACTCTGTGGACAGCAGGAAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGACTCACCATTTCCCCTGAATGTCAACTCTGTGGACAGCAGGAAC  335

seq1  TCCAACTGCCTTGTGCTTGTTGCTTAATGTTTAGCTTAGAAAACCCTTCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGCCTTGTGCTTGTTGCTTAATGTTTAGCTTAGAAAACCCTTCA  385

seq1  GTGGATGTTTATTGAATGAAAGAATTTACCTGGGCAAAGTTTTACTTGGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGTTTATTGAATGAAAGAATTTACCTGGGCAAAGTTTTACTTGGT  435

seq1  GGATGATTTTCTGGTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGTTTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATTTTCTGGTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGTTTCT  485

seq1  TTCTTTCTTTTAAGTCTTTATTTATCCCTTTAAATAGTGCATGAGTACTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTTAAGTCTTTATTTATCCCTTTAAATAGTGCATGAGTACTA  535

seq1  TCCAATCTTATAAAACACACTCTTGGTTTAATAATAAAGATGATACATTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCTTATAAAACACACTCTTGGTTTAATAATAAAGATGATACATTT  585

seq1  GTTGTTAGTAAAATAATTTATCTTTAAAAGTCACTTTACAAAGGCAGTGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAGTAAAATAATTTATCTTTAAAAGTCACTTTACAAAGGCAGTGC  635

seq1  ATGGTATCACGTAAAATAACAGACTTCCCTGAGGTCTCATATTGTACCTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATCACGTAAAATAACAGACTTCCCTGAGGTCTCATATTGTACCTA  685

seq1  AGTTTGTTTGTTTGTTTGTTTATTTATTTATTTAAGATTTAATGTACATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTGTTTGTTTGTTTATTTATTTATTTAAGATTTAATGTACATT  735

seq1  TATTCTTAACACGTGGAACATATAGTGTAAAGATTTCATTCTGAATAAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAACACGTGGAACATATAGTGTAAAGATTTCATTCTGAATAAAT  785

seq1  GATATTCATTAAGTTCAAAAGGGGAAAAAGGAGGAATTTACATCAAGATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCATTAAGTTCAAAAGGGGAAAAAGGAGGAATTTACATCAAGATT  835

seq1  TTAGCTACATTGTTGAAATACAAATATGTAGATTTTATCACTGAAAAAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTACATTGTTGAAATACAAATATGTAGATTTTATCACTGAAAAAAA  885

seq1  AATCTCAATCGTGTTTCTTCACCAGGAACTTCAACTGAACCTAGAACTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAATCGTGTTTCTTCACCAGGAACTTCAACTGAACCTAGAACTTT  935

seq1  TTCACACCTCGATTAGAAAGGAAACAAAAACAAAACAAAATCCCAGGGGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCTCGATTAGAAAGGAAACAAAAACAAAACAAAATCCCAGGGGA  985

seq1  AAAAAAAAAAAAACCTCTCTAAATTGATTGGCTGCTGAGCCAGTAAGGGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACCTCTCTAAATTGATTGGCTGCTGAGCCAGTAAGGGC  1035

seq1  TTTTTCAGAGATCTGCAGAGCATCGCATCAAGAAGGGCAATGTCGGGCAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGAGATCTGCAGAGCATCGCATCAAGAAGGGCAATGTCGGGCAA  1085

seq1  GAGATTAAATAGCTGTGTCTCGATTTGTACAGGTCACCAACTTGTTAACT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAAATAGCTGTGTCTCGATTTGTACAGGTCACCAACTTGTTAACT  1135

seq1  TGCCATACTATAAAAGAGTAACTGGGAAGGGGCCCAAACTGTGAAGAATT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATACTATAAAAGAGTAACTGGGAAGGGGCCCAAACTGTGAAGAATT  1185

seq1  C  1195
      |
seq2  C  1186

seq1: chr8_80215730_80216833
seq2: B6Ng01-104I19.g_68_1169

seq1  GAATTCTTATCTTTTGCTAGTGCGGCCTTTCTTGTTTCCCTACCCCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCTTTTGCTAGTGCGGCCTTTCTTGTTTCCCTACCCCACCC  50

seq1  CAGTGGGGCTGGCTTGCCCTGTGCTTGCTGCCTCTGCCAGGGGTCCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGGCTGGCTTGCCCTGTGCTTGCTGCCTCTGCCAGGGGTCCAGCA  100

seq1  GCACTCCAGGACTGTTACTGGCATCGAGCGCCAGAGGAGGGTTATGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCAGGACTGTTACTGGCATCGAGCGCCAGAGGAGGGTTATGGAAG  150

seq1  CAGCAGCCACATGCACTGGGTAACTACCTCTCATGGCCCCTAAGTCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCACATGCACTGGGTAACTACCTCTCATGGCCCCTAAGTCAGGG  200

seq1  ACTACTGTTCTGGGGCTGCTCTGACTGTTGAGGCCCCCAGACTCATGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGTTCTGGGGCTGCTCTGACTGTTGAGGCCCCCAGACTCATGGAC  250

seq1  TGAGGAATGGGCGGGTTCTCAGCGTCCCAGGTGTGATTTGGCCATCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATGGGCGGGTTCTCAGCGTCCCAGGTGTGATTTGGCCATCATGG  300

seq1  TTATTTCCTGTCTGCGTGGAGGCGGACAGTTCCTTCCCCATGCCCTGTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCTGTCTGCGTGGAGGCGGACAGTTCCTTCCCCATGCCCTGTCG  350

seq1  TTGTAATATGCTGCCTTGCTACCAGCTCAAGGCAGTGAGTGAGGTGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATATGCTGCCTTGCTACCAGCTCAAGGCAGTGAGTGAGGTGAACT  400

seq1  GACCATAGGTTGCAACCTCTGAAACTGGGACCTCAGACTGTCGTCTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAGGTTGCAACCTCTGAAACTGGGACCTCAGACTGTCGTCTTAGC  450

seq1  CACCGTGACCTCAAGAAGGGCCTGCATGTTAATCTCGCTCTCCCAAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGACCTCAAGAAGGGCCTGCATGTTAATCTCGCTCTCCCAAGCAC  500

seq1  TATTAGGGTATGTGGTAAGCTGGCCTGGGAGATACTCCAGCTCCTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGGTATGTGGTAAGCTGGCCTGGGAGATACTCCAGCTCCTTCTGT  550

seq1  CTTAGAAATAACACAGGTATAGAAGAATTGTCATCATGGAAGCAAACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATAACACAGGTATAGAAGAATTGTCATCATGGAAGCAAACAGT  600

seq1  CTAACTCACAGATTTTTCTTTTTAAATCTCATTTGTTTATTTATTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCACAGATTTTTCTTTTTAAATCTCATTTGTTTATTTATTCTCTC  650

seq1  TCTCTCTCCTCCCTCCCTACCTCCATTCCTTCCTTCCCCCTCTCTCCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCTCCCTCCCTACCTCCATTCCTTCCTTCCCCCTCTCTCCTAC  700

seq1  TCTTTTCTTTCATTATTTCAGCTTTCCTTGTTTCTTCCCCCCCCCCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTCATTATTTCAGCTTTCCTTGTTTCTTCCCCCCCCCCCTTT  750

seq1  TTTTTGGGAAAACAGGTATTTCTTTCCTATTATTTACTAACACTTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGAAAACAGGTATTTCTTTCCTATTATTTACTAACACTTAAAAT  800

seq1  TAAAGCTACGCTGTTTTGAAATAGTAAACATAAGCTGTCTAATGCTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTACGCTGTTTTGAAATAGTAAACATAAGCTGTCTAATGCTTAGA  850

seq1  TAACAACAATCAAACAGTGAGTCTACCACAGCCTGGGATTCCTACCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACAATCAAACAGTGAGTCTACCACAGCCTGGGATTCCTACCCAAA  900

seq1  GGCCACCCTTGCTGATGGTGATGTTTCTTTCAGGAAACTTACAT-GTGCA  949
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGCACCCTTGCTGATGGTGATGTTTCTTTCAGGAAACTTACATGGTGCA  950

seq1  CACTTGGTCTTTTTTTTAAACCAATGGGAACATATA-TAAAAAATACTTT  998
      ||||||| ||||||||| || ||||||||||| ||| |||||||||||||
seq2  CACTTGGGCTTTTTTTT-AATCAATGGGAACAAATATTAAAAAATACTTT  999

seq1  TAAGAGTTTACTGTGTTCTCATTTCTGGAGTAATTTTACGGAAAGCACTA  1048
      | |||  ||||||||||||||||||||||| || ||||||||||| ||||
seq2  T-AGAAGTTACTGTGTTCTCATTTCTGGAG-AAATTTACGGAAAGGACTA  1047

seq1  TTTCCTAAGCAGAAGGTCTTGTTTGTAAAAACATTTTGATGAAACAGTTT  1098
      ||| |||||   |  ||||||||||  ||||| |||||| || || ||||
seq2  TTTTCTAAGGCAAGAGTCTTGTTTGGTAAAACTTTTTGA-GAGACCGTTT  1096

seq1  AAACCA  1104
      ||||||
seq2  AAACCA  1102