BAC Information

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BAC

Clone NameB6Ng01-104M07
Chromosome8 (Build37)
Map Location 105,858,167 - 106,009,425
singlet/doubletdoublet
Overlap gene1600027J07Rik
Upstream geneCdh11, EG667618, LOC100041368
Downstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104M07.bB6Ng01-104M07.g
ACCDH912970DH912971
length6581,015
definitionDH912970|Mus musculus domesticus DNA, BAC clone: B6Ng01-104M07, 5' end.DH912971|Mus musculus domesticus DNA, BAC clone: B6Ng01-104M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,858,167 - 105,858,824)(106,008,410 - 106,009,425)
sequence
gaattcctatgtgggggatacctaacatctacagaggtgagctctgaaac
caaaggaggagggaagtcccatctcctgcctcctatttttttttaaactt
aaaaggtttcctacacatgcgcatcctatatggaagatattttcccatct
cattaccccccactttcctgcccacccccttcctccttctactcttttgt
tccctggtcagtgtgaattctgaacattgttggttggaaggtaaactagc
ccagtttctatgacatttagcatgaaggcctctcaaaaacactaaaaccc
catctattatatagcccagttataaacagtatttttaaataatatttttt
actccttgaacattctaagcacttatggcatgtgtatattgaccacactt
agcccttgtcttctcctacctctacctacttccaactgcccccactagag
tctcctaccccacctccctctcagcttcatatccttgtaaccttctagtt
ccaatcactgtcacagccctataaggtgggcaagcctggcaccttcaatt
ccattgtagaaaactacaaataaaatgaaaaaaaaaaagcaaaaacaaaa
aaagactgagaggattggagggttgaagggtaaagtaggagaaggggatg
gggagagg
gaattcagaagcatgtatggagagccttgcttcgggtattggcttgttgc
cagtgctcagtgagcacaattcctcccttcccctacttttgcagcattta
aaccccatttgagtgaatgcagccatacagcatccctagtaaccagctga
aatctcatttcgactccatcatcatcatcatcatcatcatcatcttctac
ctactctgtataactcagtgcttacatttcattctgggtaccagaacaat
aaagaaaaagagatactttctctgtaattggaagtgtaatttgtccagga
tggtactatatgtggatatttttttttaagtaggctcactgttgcaaata
aaatgatgagaaataaaactaatagtagaatcaaacttcctaaaaaagtg
ggcactgagtcctggcaagcacttgaagatacctccgctctgtgtaatgt
gcaaagcaaaggcttagaagcaggagtttataggtcccatggcacacagc
cctgggaaaggggcaccaatctgtgtggccagcaaaaggaggcatgggtt
cctggaattatataatgtaccccttccaggggcgaggataacccaggtct
gaatcctggctctgctaaacacatgttgacagagtgatttattttaatcc
ctcgaggcttaacatctatgcctgtgaaatggggacaggagtcaatgaat
cactaagatctatagcatccaatgaagtataattttttaatgaatttcat
taaaattagctgcatggactatattgctaggagtcaaactctgagagagc
ggcacttagagtccagcatgctaatgacgatctacttctcaaggcaaggg
gtcttcacgtgggcctgaggtttatgatttgtttatatctcctctattcc
tcatgtatatttcattttgcaaattctattacataatttaagaaacccaa
ggcaatcgttctgagagcaagtttatgttaacaagctttattgaatgggg
cggggggggggggcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105858167_105858824
seq2: B6Ng01-104M07.b_44_701

seq1  GAATTCCTATGTGGGGGATACCTAACATCTACAGAGGTGAGCTCTGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGTGGGGGATACCTAACATCTACAGAGGTGAGCTCTGAAAC  50

seq1  CAAAGGAGGAGGGAAGTCCCATCTCCTGCCTCCTATTTTTTTTTAAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGGAGGGAAGTCCCATCTCCTGCCTCCTATTTTTTTTTAAACTT  100

seq1  AAAAGGTTTCCTACACATGCGCATCCTATATGGAAGATATTTTCCCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTTCCTACACATGCGCATCCTATATGGAAGATATTTTCCCATCT  150

seq1  CATTACCCCCCACTTTCCTGCCCACCCCCTTCCTCCTTCTACTCTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCCCCCACTTTCCTGCCCACCCCCTTCCTCCTTCTACTCTTTTGT  200

seq1  TCCCTGGTCAGTGTGAATTCTGAACATTGTTGGTTGGAAGGTAAACTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTCAGTGTGAATTCTGAACATTGTTGGTTGGAAGGTAAACTAGC  250

seq1  CCAGTTTCTATGACATTTAGCATGAAGGCCTCTCAAAAACACTAAAACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCTATGACATTTAGCATGAAGGCCTCTCAAAAACACTAAAACCC  300

seq1  CATCTATTATATAGCCCAGTTATAAACAGTATTTTTAAATAATATTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTATATAGCCCAGTTATAAACAGTATTTTTAAATAATATTTTTT  350

seq1  ACTCCTTGAACATTCTAAGCACTTATGGCATGTGTATATTGACCACACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGAACATTCTAAGCACTTATGGCATGTGTATATTGACCACACTT  400

seq1  AGCCCTTGTCTTCTCCTACCTCTACCTACTTCCAACTGCCCCCACTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTGTCTTCTCCTACCTCTACCTACTTCCAACTGCCCCCACTAGAG  450

seq1  TCTCCTACCCCACCTCCCTCTCAGCTTCATATCCTTGTAACCTTCTAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTACCCCACCTCCCTCTCAGCTTCATATCCTTGTAACCTTCTAGTT  500

seq1  CCAATCACTGTCACAGCCCTATAAGGTGGGCAAGCCTGGCACCTTCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCACTGTCACAGCCCTATAAGGTGGGCAAGCCTGGCACCTTCAATT  550

seq1  CCATTGTAGAAAACTACAAATAAAATGAAAAAAAAAAAGCAAAAACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTAGAAAACTACAAATAAAATGAAAAAAAAAAAGCAAAAACAAAA  600

seq1  AAAGACTGAGAGGATTGGAGGGTTGAAGGGTAAAGTAGGAGAAGGGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGAGAGGATTGGAGGGTTGAAGGGTAAAGTAGGAGAAGGGGATG  650

seq1  GGGAGAGG  658
      ||||||||
seq2  GGGAGAGG  658

seq1: chr8_106008410_106009425
seq2: B6Ng01-104M07.g_67_1081 (reverse)

seq1  CG-CCCCCCCCCCCGCCCCATTCAAT-AAGCTTGTTAACATAAACTTGCT  48
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CGCCCCCCCCCCCCGCCCCATTCAATAAAGCTTGTTAACATAAACTTGCT  50

seq1  CTCAGAACGATTGCCTTGGGTTTCTTTAAATTATGTAATAGATTTTGCAA  98
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  CTCAGAACGATTGCCTTGGGTTTC-TTAAATTATGTAATAGAATTTGCAA  99

seq1  AATGAAATATACATGAGGAATAGAGGAGATATAAAACAAAATCATAAACC  148
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  AATGAAATATACATGAGGAATAGAGGAGATATAAA--CAAATCATAAACC  147

seq1  TCAGGCCCACGTGAAGACCCCTTGCCTTGAGAAGTAGATCGTCATTAGCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCCACGTGAAGACCCCTTGCCTTGAGAAGTAGATCGTCATTAGCA  197

seq1  TGCTGGACTCTGAGTGCCGCTCTCTCAGAGTTTGACTCCTAGCAATATAG  248
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACTCTAAGTGCCGCTCTCTCAGAGTTTGACTCCTAGCAATATAG  247

seq1  TCCATGCAGCTAATTTTAATGAAATTCATTAAAAAATTATACTTCATTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCAGCTAATTTTAATGAAATTCATTAAAAAATTATACTTCATTGG  297

seq1  ATGCTATAGATCTTAGTGATTCATTGACTCCTGTCCCCATTTCACAGGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATAGATCTTAGTGATTCATTGACTCCTGTCCCCATTTCACAGGCA  347

seq1  TAGATGTTAAGCCTCGAGGGATTAAAATAAATCACTCTGTCAACATGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTTAAGCCTCGAGGGATTAAAATAAATCACTCTGTCAACATGTGT  397

seq1  TTAGCAGAGCCAGGATTCAGACCTGGGTTATCCTCGCCCCTGGAAGGGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGAGCCAGGATTCAGACCTGGGTTATCCTCGCCCCTGGAAGGGGT  447

seq1  ACATTATATAATTCCAGGAACCCATGCCTCCTTTTGCTGGCCACACAGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATATAATTCCAGGAACCCATGCCTCCTTTTGCTGGCCACACAGAT  497

seq1  TGGTGCCCCTTTCCCAGGGCTGTGTGCCATGGGACCTATAAACTCCTGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCCTTTCCCAGGGCTGTGTGCCATGGGACCTATAAACTCCTGCT  547

seq1  TCTAAGCCTTTGCTTTGCACATTACACAGAGCGGAGGTATCTTCAAGTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCCTTTGCTTTGCACATTACACAGAGCGGAGGTATCTTCAAGTGC  597

seq1  TTGCCAGGACTCAGTGCCCACTTTTTTAGGAAGTTTGATTCTACTATTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGGACTCAGTGCCCACTTTTTTAGGAAGTTTGATTCTACTATTAG  647

seq1  TTTTATTTCTCATCATTTTATTTGCAACAGTGAGCCTACTTAAAAAAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTCATCATTTTATTTGCAACAGTGAGCCTACTTAAAAAAAAA  697

seq1  TATCCACATATAGTACCATCCTGGACAAATTACACTTCCAATTACAGAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACATATAGTACCATCCTGGACAAATTACACTTCCAATTACAGAGA  747

seq1  AAGTATCTCTTTTTCTTTATTGTTCTGGTACCCAGAATGAAATGTAAGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTCTTTTTCTTTATTGTTCTGGTACCCAGAATGAAATGTAAGCA  797

seq1  CTGAGTTATACAGAGTAGGTAGAAGATGATGATGATGATGATGATGATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTATACAGAGTAGGTAGAAGATGATGATGATGATGATGATGATGA  847

seq1  TGGAGTCGAAATGAGATTTCAGCTGGTTACTAGGGATGCTGTATGGCTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCGAAATGAGATTTCAGCTGGTTACTAGGGATGCTGTATGGCTGC  897

seq1  ATTCACTCAAATGGGGTTTAAATGCTGCAAAAGTAGGGGAAGGGAGGAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCAAATGGGGTTTAAATGCTGCAAAAGTAGGGGAAGGGAGGAAT  947

seq1  TGTGCTCACTGAGCACTGGCAACAAGCCAATACCCGAAGCAAGGCTCTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCACTGAGCACTGGCAACAAGCCAATACCCGAAGCAAGGCTCTCC  997

seq1  ATACATGCTTCTGAATTC  1016
      ||||||||||||||||||
seq2  ATACATGCTTCTGAATTC  1015