BAC Information

Click to search

BAC

Clone NameB6Ng01-105A19
Chromosome8 (Build37)
Map Location 11,447,038 - 11,575,571
singlet/doubletdoublet
Overlap geneCol4a2, Rab20, 0710008K08Rik, Cars2, Ing1
Upstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1
Downstream geneAnkrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105A19.bB6Ng01-105A19.g
ACCDH913176DH913177
length1,1091,082
definitionDH913176|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A19, 5' end.DH913177|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,447,038 - 11,448,142)(11,574,482 - 11,575,571)
sequence
gaattcttggcaatcctcctgcctcagcttacaaacatgagttaccactg
gtggtggtgaatcatgcctttcatcccagcactcaggaggtagagatggg
tagatctctgagtttgaggccagcctggtctaaagagtaaattccaggac
agccagggctacagagagaaaccttgtctccaaaacaaaaccaaaaaaac
aaaaacaaaacaaagaaaaaacaaaaacaaaacaaagaaaaaacaaaaag
aaaacaacaaaaacaacacaacaaaaccgcgtgagctaccaagaatggcc
tattttgagttgttgatttttggttggtggttggttgttttttttcatct
actggacatcttgaatggatagtttaaccaaaatatagtcagtcatatct
acagattgtatctacttcttgattgtggctttcattgaacaaccagccat
ggatgctaaggttcatgccatgcctgcatctacgacaccctcccccaaca
tcaggaccagtcccttcagtcaccctgaaggcagagcaccctccccaggg
tctatgtgacagatattcctgttattgacttagcaaacaagcagggacca
aacagggatggaggatgtggcttggtccagcatgcacgatgccctgaact
ttatctgcagcactgaccaagctgggcacaggagcccacctgtgagccta
gcccccgggaagtgaaggtagaaggcaggaggggaagagttcaaggtcaa
cctaagccacgtatagagtcatgtagagttggagactggcctgggcaaca
ggaaagactgttaaacccagggagtgctgtttgcgtgcatttgatccaag
ctgctggagaccctaagagaggagcaattatttgagtctaggacttcaac
accaactagggccaacatagtgagtttctgccttgaaagtatgtaattag
cacagtggccgtagtgcctgggtgtttcgggcatgtgacctctaccacac
ttcatctcctgctctcttctgcagcacactgcagctggggatgaaggcgg
tggccattcactggtgttcgccggcagctgttctgaaggacttcggtgca
atcccattt
gaattctttactgagttccacgggaaaggtggctgaattcctccagtggg
aattcctgtgctgctctgaaccttgaatgtcttcatccctcaggctgacc
acacaacaggctgctcactcttcctcttcagaaggaagagcatgcttcga
ccacactctgctaggcccacttctcgctccagcttggccaggcccaatcc
tgtgaacattagtcccctgtgtctgggtcctgagctcaggctgagttcca
gcctcacaggtcagacatgcaaagcgctggccttcagcctggcttcctgc
tccactcatctaccaggctcctactcctaacctttcagccccttcctgtt
gagcgtcacctccctgcagcccctccacagcctctagcagagggttcggc
tcaggctccaagctggcttggggcatttggaacaggaaacactcagctca
acagactctctgcaccctgaggtcttgagtcttgagttgactgcctgagg
gctgagcttgagtcaggccagcatgtcaggaacaggcaagaatctggccg
tttacacaggaagcagatgcttgctagactcagaaatgcaagagaagcaa
tggagggggcaggcacaaacacagaaccctttaagaacacaactcaggac
tcaatcaggtacctgtgagcccaggtccacacagccttattcaagatggt
ccaagggtggaggcgatacatcctgcagctggaacggagctgaaggggga
gtagcctcactcatctctctagagaagtcacccttgcagacactggaaag
aggctggagatgggaacagggcctcggacgggaagatgatagggccaggg
agacaaggcgttcgctgaggaaacaccgaagtccatctgcacgtggtcac
tgtggccgaatggtcagaccccttagcggtcgtgcccagtgctgtggctg
ggttgaacaaccacggagcccaagtttgacctgcagctcgaaaatccaag
aagataacctgctctcgcctgtcagtgttcatttgagctgaccacttagc
ttgcatcatgccactacaaagaaccagaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_11447038_11448142
seq2: B6Ng01-105A19.b_42_1150

seq1  GAATTCTTGGCAATCCTCCTGCCTCAGCTTACAAACATGAGTTACCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCAATCCTCCTGCCTCAGCTTACAAACATGAGTTACCACTG  50

seq1  GTGGTGGTGAATCATGCCTTTCATCCCAGCACTCAGGAGGTAGAGATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGAATCATGCCTTTCATCCCAGCACTCAGGAGGTAGAGATGGG  100

seq1  TAGATCTCTGAGTTTGAGGCCAGCCTGGTCTAAAGAGTAAATTCCAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTCTGAGTTTGAGGCCAGCCTGGTCTAAAGAGTAAATTCCAGGAC  150

seq1  AGCCAGGGCTACAGAGAGAAACCTTGTCTCCAAAACAAAACCAAAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTACAGAGAGAAACCTTGTCTCCAAAACAAAACCAAAAAAAC  200

seq1  AAAAACAAAACAAAGAAAAAACAAAAACAAAACAAAGAAAAAACAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACAAAGAAAAAACAAAAACAAAACAAAGAAAAAACAAAAAG  250

seq1  AAAACAACAAAAACAACACAACAAAACCGCGTGAGCTACCAAGAATGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAAAAACAACACAACAAAACCGCGTGAGCTACCAAGAATGGCC  300

seq1  TATTTTGAGTTGTTGATTTTTGGTTGGTGGTTGGTTGTTTTTTTTCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAGTTGTTGATTTTTGGTTGGTGGTTGGTTGTTTTTTTTCATCT  350

seq1  ACTGGACATCTTGAATGGATAGTTTAACCAAAATATAGTCAGTCATATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACATCTTGAATGGATAGTTTAACCAAAATATAGTCAGTCATATCT  400

seq1  ACAGATTGTATCTACTTCTTGATTGTGGCTTTCATTGAACAACCAGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTGTATCTACTTCTTGATTGTGGCTTTCATTGAACAACCAGCCAT  450

seq1  GGATGCTAAGGTTCATGCCATGCCTGCATCTACGACACCCTCCCCCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTAAGGTTCATGCCATGCCTGCATCTACGACACCCTCCCCCAACA  500

seq1  TCAGGACCAGTCCCTTCAGTCACCCTGAAGGCAGAGCACCCTCCCCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCAGTCCCTTCAGTCACCCTGAAGGCAGAGCACCCTCCCCAGGG  550

seq1  TCTATGTGACAGATATTCCTGTTATTGACTTAGCAAACAAGCAGGGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGACAGATATTCCTGTTATTGACTTAGCAAACAAGCAGGGACCA  600

seq1  AACAGGGATGGAGGATGTGGCTTGGTCCAGCATGCACGATGCCCTGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGATGGAGGATGTGGCTTGGTCCAGCATGCACGATGCCCTGAACT  650

seq1  TTATCTGCAGCACTGACCAAGCTGGGCACAGGAGCCCACCTGTGAGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGCAGCACTGACCAAGCTGGGCACAGGAGCCCACCTGTGAGCCTA  700

seq1  GCCCCCGGGAAGTGAAGGTAGAAGGCAGGAGGGGAAGAGTTCAAGGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCGGGAAGTGAAGGTAGAAGGCAGGAGGGGAAGAGTTCAAGGTCAA  750

seq1  CCTAAGCCACGTATAGAGTCATGTAGAGTTGGAGACTGGCCTGGGCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCCACGTATAGAGTCATGTAGAGTTGGAGACTGGCCTGGGCAACA  800

seq1  GGAAAGACTGTTAAACCCA-GGAGTGCTG-TTGCGTGCATTTGATCCAAG  848
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  GGAAAGACTGTTAAACCCAGGGAGTGCTGTTTGCGTGCATTTGATCCAAG  850

seq1  CTGCTGGAGACCCTAAGAGAGGAGCAATTATTTGAGTCTAGGACTTCAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGAGACCCTAAGAGAGGAGCAATTATTTGAGTCTAGGACTTCAAC  900

seq1  ACCAACTAGGG-CAACATAGTGAGTTTCTGCCTTGAAAGTATGTAATTAG  947
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTAGGGCCAACATAGTGAGTTTCTGCCTTGAAAGTATGTAATTAG  950

seq1  CACAGTTGGCCGTAGTGCCTGGGTGTTTCGGGCATGTGACCTCTAACACA  997
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACAG-TGGCCGTAGTGCCTGGGTGTTTCGGGCATGTGACCTCTACCACA  999

seq1  CTTCATCTCCTGCTCTC-TCTGCAGCACACTGCAGCCGGGGATGAAGGCG  1046
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  CTTCATCTCCTGCTCTCTTCTGCAGCACACTGCAGCTGGGGATGAAGGCG  1049

seq1  GTGGCCAGTCACTGGTG-TCGCCGGGCAGCTG-TCTAGAGGACTTCCGTG  1094
      ||||||| ||||||||| ||||| |||||||| |||  |||||||| |||
seq2  GTGGCCATTCACTGGTGTTCGCC-GGCAGCTGTTCTGAAGGACTTCGGTG  1098

seq1  CAACGCCATTT  1105
      |||  ||||||
seq2  CAATCCCATTT  1109

seq1: chr8_11574482_11575571
seq2: B6Ng01-105A19.g_68_1149 (reverse)

seq1  TTTTTCTGGTTTCTTTGTGGT-GCATGATGCCAGCTAAAGTGGTCAGCTC  49
      ||||||||| |||||||| || ||||||||| |||| |||||||||||||
seq2  TTTTTCTGG-TTCTTTGTAGTGGCATGATGCAAGCT-AAGTGGTCAGCTC  48

seq1  AATGGAACCAACCTGACAGGCGGGAGCAGGTTATTCTTCCTGGATCTTCG  99
      ||  ||||    |||||||||| |||||||||| ||||| ||||| ||||
seq2  AAATGAAC---ACTGACAGGCGAGAGCAGGTTA-TCTTCTTGGATTTTCG  94

seq1  AGCTGCAGGTCAAACCTGGGGCTCCGTGGTTTGTTCAACCCAGCCACAGC  149
      |||||||||||||| || ||||||||||| ||||||||||||||||||||
seq2  AGCTGCAGGTCAAA-CTTGGGCTCCGTGG-TTGTTCAACCCAGCCACAGC  142

seq1  ACTGGGCACGACCGCTAAGGGGTCTGACCATTCGGCCACAGTGACCACGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCACGACCGCTAAGGGGTCTGACCATTCGGCCACAGTGACCACGT  192

seq1  GCAGATGGACCTTCGGTGTTTCCTCAGCGAACGCCTTGTCTCCCTGGCCC  249
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGGA-CTTCGGTGTTTCCTCAGCGAACGCCTTGTCTCCCTGGCCC  241

seq1  TATCATCTTCCCGTCCGAGGCCCTGTTCCCATCTCCAGCCTCTTTCCAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTTCCCGTCCGAGGCCCTGTTCCCATCTCCAGCCTCTTTCCAGT  291

seq1  GTCTGCAAGGGTGACTTCTCTAGAGAGATGAGTGAGGCTACTCCCCCTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAAGGGTGACTTCTCTAGAGAGATGAGTGAGGCTACTCCCCCTTC  341

seq1  AGCTCCGTTCCAGCTGCAGGATGTATCGCCTCCACCCTTGGACCATCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGTTCCAGCTGCAGGATGTATCGCCTCCACCCTTGGACCATCTTG  391

seq1  AATAAGGCTGTGTGGACCTGGGCTCACAGGTACCTGATTGAGTCCTGAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCTGTGTGGACCTGGGCTCACAGGTACCTGATTGAGTCCTGAGT  441

seq1  TGTGTTCTTAAAGGGTTCTGTGTTTGTGCCTGCCCCCTCCATTGCTTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTAAAGGGTTCTGTGTTTGTGCCTGCCCCCTCCATTGCTTCTC  491

seq1  TTGCATTTCTGAGTCTAGCAAGCATCTGCTTCCTGTGTAAACGGCCAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTCTGAGTCTAGCAAGCATCTGCTTCCTGTGTAAACGGCCAGAT  541

seq1  TCTTGCCTGTTCCTGACATGCTGGCCTGACTCAAGCTCAGCCCTCAGGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTGTTCCTGACATGCTGGCCTGACTCAAGCTCAGCCCTCAGGCA  591

seq1  GTCAACTCAAGACTCAAGACCTCAGGGTGCAGAGAGTCTGTTGAGCTGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTCAAGACTCAAGACCTCAGGGTGCAGAGAGTCTGTTGAGCTGAG  641

seq1  TGTTTCCTGTTCCAAATGCCCCAAGCCAGCTTGGAGCCTGAGCCGAACCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTGTTCCAAATGCCCCAAGCCAGCTTGGAGCCTGAGCCGAACCC  691

seq1  TCTGCTAGAGGCTGTGGAGGGGCTGCAGGGAGGTGACGCTCAACAGGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAGAGGCTGTGGAGGGGCTGCAGGGAGGTGACGCTCAACAGGAAG  741

seq1  GGGCTGAAAGGTTAGGAGTAGGAGCCTGGTAGATGAGTGGAGCAGGAAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAAAGGTTAGGAGTAGGAGCCTGGTAGATGAGTGGAGCAGGAAGC  791

seq1  CAGGCTGAAGGCCAGCGCTTTGCATGTCTGACCTGTGAGGCTGGAACTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAAGGCCAGCGCTTTGCATGTCTGACCTGTGAGGCTGGAACTCA  841

seq1  GCCTGAGCTCAGGACCCAGACACAGGGGACTAATGTTCACAGGATTGGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGCTCAGGACCCAGACACAGGGGACTAATGTTCACAGGATTGGGC  891

seq1  CTGGCCAAGCTGGAGCGAGAAGTGGGCCTAGCAGAGTGTGGTCGAAGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAAGCTGGAGCGAGAAGTGGGCCTAGCAGAGTGTGGTCGAAGCAT  941

seq1  GCTCTTCCTTCTGAAGAGGAAGAGTGAGCAGCCTGTTGTGTGGTCAGCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCTTCTGAAGAGGAAGAGTGAGCAGCCTGTTGTGTGGTCAGCCT  991

seq1  GAGGGATGAAGACATTCAAGGTTCAGAGCAGCACAGGAATTCCCACTGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGAAGACATTCAAGGTTCAGAGCAGCACAGGAATTCCCACTGGA  1041

seq1  GGAATTCAGCCACCTTTCCCGTGGAACTCAGTAAAGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCAGCCACCTTTCCCGTGGAACTCAGTAAAGAATTC  1082