BAC Information

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BAC

Clone NameB6Ng01-105E22
Chromosome8 (Build37)
Map Location 96,858,344 - 97,062,342
singlet/doubletdoublet
Overlap geneSlc12a3, Herpud1, EG434339, AI451557, Cpne2
Upstream geneCes1, 2310039D24Rik, Ces7, Gnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555
Downstream gene2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105E22.bB6Ng01-105E22.g
ACCDH913368DH913369
length1,127850
definitionDH913368|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E22, 5' end.DH913369|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,858,344 - 96,859,470)(97,061,492 - 97,062,342)
sequence
gaattctctagccacacttttaggctaagccaaaggttgtgcacataact
cctgctcacaccctattggccacacagagctacaaagggaggcaagaaaa
tgtgttcttcaaccctgctaaatcctgtattcagccaaatgtcagaggtt
acatatcaggaaaccaaagaatcactgggctatagccagcaggctggccc
agggggagcctttgattggcaggggcctggcttgcgtgccttgcttctcc
atgttgctctctggcctcctggctcttcagtctccaggtggttctgtgct
tctccagccgccctcttgacagtatctgctgctgggaatgaacactctgc
taacgtagcccccgacctgactccatcataactcctgtttctagtctcag
atcaacttgttcgctgtcacgtccctgactcctcactgtctgactgagat
gaggaggcagtcacgtgggtaagggagtgagtgaccctgcaggcccctga
aggctgacctccggtgtcctttactccaggcccaggtgctattctttctt
gtcatcatggtctcctttgccaactacctggtgggcacactgatcccagc
atctgaagacaaagcctctaaaggcttctacagctaccatggtacgtgag
gtcaggagcttcccttggcggtgactcagtggatgggggtctgtgtattt
gactccttacatgggcacaagaggccggatctcctcccaaggccacaggc
ttccaggtatcccactgctgtttgactggggcccagttagatggctaagc
cctgtgggtggctctgacttaaggcattggtttttccaggggacattttt
gttcaaaacctggtacccgactgggagaggcaatgatggtagcttcttgg
catgttctccatcttcttcccttcggccactggcattctggtcagggcca
acatctccgggacctcaaggtaagcagagctgtcctgtcctctaacgcat
cccaaaccctgacatcattcccagaatccccagcctcgcccttgaagacc
attgcatttgctcttgacttggcctttgccctaagagcccaaaagccctg
gtccggttctggtatctttgcaaaatt
gaattcttggacttctaaaagttatttcttgccagctggtggtggcacat
gcctttaatcccagcacttgggaggcagaggcaggcaggtttctgagttc
gaggccagcttggtctacaaagtgagttctaggacagccagggctataca
gagaaaccctgtctcaaaaaaccaaaaaaaaaaaaaagtcatttctttta
tgtgtatgtgtgttttgcctgcatgtatatttatgcaccatgtgtgcgcg
tctggtgcccacagaggctggataaggatatcaggtcctctagaactaga
attatagatggttgtgagctactgggaactgaacccaggttctctgcaag
agcaacaagtgttctcaaccgctgagacatctctctagccctgtgggttt
gttttgtttttttagactctgggtggtttaaccttgatatgtagaccagg
ctggtctagaactccagagattcaccctgccttttcctcttgagagctgg
gatcaaagctattcagtaccatacttagctgaactctgggattttggaat
aacgagttcttagacactctgggctgaaagggtgcaccctgtctcaccct
ccagccatataagaatcctgtcctcagtcctaccacttcaacatctctgc
ttgttagggaaggagggattcagagtcaagactcctactcccagggcttt
tcctgtgcattgtggtggctgtgtggctcctgccaagtggcatgcagccc
atggagcaggctggcactcactctggacaaggtgatggagtcctggagct
ctgcacttaaaccactttctacttcagctgtggacccggtactgtgctta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_96858344_96859470
seq2: B6Ng01-105E22.b_45_1171

seq1  GAATTCTCTAGCCACACTTTTAGGCTAAGCCAAAGGTTGTGCACATAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGCCACACTTTTAGGCTAAGCCAAAGGTTGTGCACATAACT  50

seq1  CCTGCTCACACCCTATTGGCCACACAGAGCTACAAAGGGAGGCAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCACACCCTATTGGCCACACAGAGCTACAAAGGGAGGCAAGAAAA  100

seq1  TGTGTTCTTCAACCCTGCTAAATCCTGTATTCAGCCAAATGTCAGAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTCAACCCTGCTAAATCCTGTATTCAGCCAAATGTCAGAGGTT  150

seq1  ACATATCAGGAAACCAAAGAATCACTGGGCTATAGCCAGCAGGCTGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCAGGAAACCAAAGAATCACTGGGCTATAGCCAGCAGGCTGGCCC  200

seq1  AGGGGGAGCCTTTGATTGGCAGGGGCCTGGCTTGCGTGCCTTGCTTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAGCCTTTGATTGGCAGGGGCCTGGCTTGCGTGCCTTGCTTCTCC  250

seq1  ATGTTGCTCTCTGGCCTCCTGGCTCTTCAGTCTCCAGGTGGTTCTGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTCTCTGGCCTCCTGGCTCTTCAGTCTCCAGGTGGTTCTGTGCT  300

seq1  TCTCCAGCCGCCCTCTTGACAGTATCTGCTGCTGGGAATGAACACTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCCGCCCTCTTGACAGTATCTGCTGCTGGGAATGAACACTCTGC  350

seq1  TAACGTAGCCCCCGACCTGACTCCATCATAACTCCTGTTTCTAGTCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTAGCCCCCGACCTGACTCCATCATAACTCCTGTTTCTAGTCTCAG  400

seq1  ATCAACTTGTTCGCTGTCACGTCCCTGACTCCTCACTGTCTGACTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTGTTCGCTGTCACGTCCCTGACTCCTCACTGTCTGACTGAGAT  450

seq1  GAGGAGGCAGTCACGTGGGTAAGGGAGTGAGTGACCCTGCAGGCCCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGCAGTCACGTGGGTAAGGGAGTGAGTGACCCTGCAGGCCCCTGA  500

seq1  AGGCTGACCTCCGGTGTCCTTTACTCCAGGCCCAGGTGCTATTCTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACCTCCGGTGTCCTTTACTCCAGGCCCAGGTGCTATTCTTTCTT  550

seq1  GTCATCATGGTCTCCTTTGCCAACTACCTGGTGGGCACACTGATCCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCATGGTCTCCTTTGCCAACTACCTGGTGGGCACACTGATCCCAGC  600

seq1  ATCTGAAGACAAAGCCTCTAAAGGCTTCTACAGCTACCATGGTACGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGACAAAGCCTCTAAAGGCTTCTACAGCTACCATGGTACGTGAG  650

seq1  GTCAGGAGCTTCCCTTGGCGGTGACTCAGTGGATGGGGGTCTGTGTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGCTTCCCTTGGCGGTGACTCAGTGGATGGGGGTCTGTGTATTT  700

seq1  GACTCCTTACATGGGCACAAGAGGCCGGATCTCCTCCCAAGGCCACAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTACATGGGCACAAGAGGCCGGATCTCCTCCCAAGGCCACAGGC  750

seq1  TTCCAGGTATCCCACTGCTGTTTGACT-GGGCCCAGTTAGATGGCTAAGC  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCCAGGTATCCCACTGCTGTTTGACTGGGGCCCAGTTAGATGGCTAAGC  800

seq1  CCTGTGGGTGGCTCTGACTT-AGGCATTGGTTTTTCCAGGGGACATTTTT  848
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTGTGGGTGGCTCTGACTTAAGGCATTGGTTTTTCCAGGGGACATTTTT  850

seq1  GTTCAGAACCTGGTACCCGACT-GGAGAGGCATTGATGGTAGCTTCTTTG  897
      ||||| |||||||||||||||| ||||||||| ||||||||||||| |||
seq2  GTTCAAAACCTGGTACCCGACTGGGAGAGGCAATGATGGTAGCTTC-TTG  899

seq1  GCATGTTCTCCATCTTCTTCCCTTCGGCCACTGGCATTCTGGCAGGGGCC  947
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  GCATGTTCTCCATCTTCTTCCCTTCGGCCACTGGCATTCTGGTCAGGGCC  949

seq1  AACATCTCCGGGGACCTCAAGGTAAGCAGAGGCTGTCCTGTCTCATAACG  997
      ||||||||| |||||||||||||||||||| |||||||||||   |||||
seq2  AACATCTCC-GGGACCTCAAGGTAAGCAGA-GCTGTCCTGTCCTCTAACG  997

seq1  CATCCCAGAACCCTGACATCATTCCCAGGATCCCCAG-CTCGGCCCTGAA  1046
      ||||||| |||||||||||||||||||| |||||||| |||| || ||||
seq2  CATCCCA-AACCCTGACATCATTCCCAGAATCCCCAGCCTCGCCCTTGAA  1046

seq1  GACCAATGCATTTGCTCATGACTAGGCCTTTG-CCTAAGAGACCTAATAT  1095
      ||||| ||||||||||| ||||| |||||||| |||||||| ||  | | 
seq2  GACCATTGCATTTGCTCTTGACTTGGCCTTTGCCCTAAGAGCCC--AAAA  1094

seq1  GCCCT-GTTCTGTTCTTGTTACTTTGCAAAATT  1127
      ||||| || | ||||| ||  ||||||||||||
seq2  GCCCTGGTCCGGTTCTGGTATCTTTGCAAAATT  1127

seq1: chr8_97061492_97062342
seq2: B6Ng01-105E22.g_69_918 (reverse)

seq1  TAAGCACAGTACCCGGTGCCACAGCTGAAGTAGAAAGTGGTTTATGTGCA  50
      ||||||||||||| ||| |||||||||||||||||||||||||| |||||
seq2  TAAGCACAGTACCGGGT-CCACAGCTGAAGTAGAAAGTGGTTTAAGTGCA  49

seq1  GAGCTCCAGGACTCCATCACCTTGTCCAGAGTGAGTGCCAGCCTGCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGCTCCAGGACTCCATCACCTTGTCCAGAGTGAGTGCCAGCCTGCTCCA  99

seq1  TGGGCTGCATGCCACTTGGCAGGAGCCACACAGCCACCACAATGCACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGCATGCCACTTGGCAGGAGCCACACAGCCACCACAATGCACAGG  149

seq1  AAAAGCCCTGGGAGTAGGAGTCTTGACTCTGAATCCCTCCTTCCCTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCCTGGGAGTAGGAGTCTTGACTCTGAATCCCTCCTTCCCTAACA  199

seq1  AGCAGAGATGTTGAAGTGGTAGGACTGAGGACAGGATTCTTATATGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGATGTTGAAGTGGTAGGACTGAGGACAGGATTCTTATATGGCTG  249

seq1  GAGGGTGAGACAGGGTGCACCCTTTCAGCCCAGAGTGTCTAAGAACTCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGAGACAGGGTGCACCCTTTCAGCCCAGAGTGTCTAAGAACTCGT  299

seq1  TATTCCAAAATCCCAGAGTTCAGCTAAGTATGGTACTGAATAGCTTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAAAATCCCAGAGTTCAGCTAAGTATGGTACTGAATAGCTTTGAT  349

seq1  CCCAGCTCTCAAGAGGAAAAGGCAGGGTGAATCTCTGGAGTTCTAGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCTCAAGAGGAAAAGGCAGGGTGAATCTCTGGAGTTCTAGACCA  399

seq1  GCCTGGTCTACATATCAAGGTTAAACCACCCAGAGTCTAAAAAAACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACATATCAAGGTTAAACCACCCAGAGTCTAAAAAAACAAAA  449

seq1  CAAACCCACAGGGCTAGAGAGATGTCTCAGCGGTTGAGAACACTTGTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCACAGGGCTAGAGAGATGTCTCAGCGGTTGAGAACACTTGTTGC  499

seq1  TCTTGCAGAGAACCTGGGTTCAGTTCCCAGTAGCTCACAACCATCTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGAGAACCTGGGTTCAGTTCCCAGTAGCTCACAACCATCTATAA  549

seq1  TTCTAGTTCTAGAGGACCTGATATCCTTATCCAGCCTCTGTGGGCACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTCTAGAGGACCTGATATCCTTATCCAGCCTCTGTGGGCACCAG  599

seq1  ACGCGCACACATGGTGCATAAATATACATGCAGGCAAAACACACATACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGCACACATGGTGCATAAATATACATGCAGGCAAAACACACATACAC  649

seq1  ATAAAAGAAATGACTTTTTTTTTTTTTTGGTTTTTTGAGACAGGGTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAATGACTTTTTTTTTTTTTTGGTTTTTTGAGACAGGGTTTCT  699

seq1  CTGTATAGCCCTGGCTGTCCTAGAACTCACTTTGTAGACCAAGCTGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGCCCTGGCTGTCCTAGAACTCACTTTGTAGACCAAGCTGGCCT  749

seq1  CGAACTCAGAAACCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTCAGAAACCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGG  799

seq1  CATGTGCCACCACCAGCTGGCAAGAAATAACTTTTAGAAGTCCAAGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCACCACCAGCTGGCAAGAAATAACTTTTAGAAGTCCAAGAATT  849

seq1  C  851
      |
seq2  C  850