BAC Information

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BAC

Clone NameB6Ng01-105F13
Chromosome8 (Build37)
Map Location 17,041,546 - 17,205,008
singlet/doubletdoublet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105F13.bB6Ng01-105F13.g
ACCDH913394DH913395
length1,0281,001
definitionDH913394|Mus musculus domesticus DNA, BAC clone: B6Ng01-105F13, 5' end.DH913395|Mus musculus domesticus DNA, BAC clone: B6Ng01-105F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,203,969 - 17,205,008)(17,041,546 - 17,042,549)
sequence
gaattcttgctggggttttcatgcctatatctgctccctttgtctgttat
tccagggttatgaaatccatttcaacctttcttgttaatcctctcctcac
taattattttctaatgatgtttcttgttgaaagtattgataaatctttca
tttctatactagaacttaacagatatatttgtttttagattgtccatgat
attcttcatttatttgaaagtaccacacattgttgagaatttcattgtga
acaaatgattacttgtgtaaaaaactctatattcgtcagttgaagtaaag
atgttttcttcccttttccaaatactaagtttaatctgtagattatgtct
atttaatcataaatcttatatttaaagtgcagttgggtgtcatgtgttgg
agttcattaagttcttgtgtcttccgttggtaaaaatgaacagaggaagg
cctgtgtctagacttttgttttgagaatcattcaaaagtaaatttagtct
atttgtttgatttggggtttttatgactttcaatttgtcgttatgtcaat
ttggggaaatactattttacaagacatagacccagtagcatttgtttgca
caggtactttagctcctcctgggagtctgtggaatctgtgctggtaatta
ttttatttttagaaacaacaccaagacccagtctttttcatttatcagtg
ctgatagtcattttagaaccagtactgatcctcagtcgctttagaagctg
ctgactgacacttcctttttctgctttctacctaatagtttatcaatttt
tcttgattgctctgtaacaaacatttggccttgctattttcccaactgtc
catattttctgtttcatttcccttcatttcttagctccacactttctatc
tgtggttcattttgtggtgttctttcccttgctgtgaatggaatgaagat
aagattaactttccttttctttcatgtaatgaaatgtttgcctaaagttt
aggtctgatgattgaaatcacataagcc
gaattcttaagacatacccatattaaagtctggtttcaatttcaattact
tggtttagtaataaggagtgaaggcaagttagttttgcattactaatgat
gagacttaggcccataaatacagactttgataagagctctaaatacagat
gcaggcagttactaaagccttattccacaaaggcaatgggaaacagcaat
cagacagaactgaatcagccacacagctttagtgaacctgctagcatgtg
atacagtgtactgagagctgccccagtggatccaggccaagcctggactt
gacttctgccctagaaaactgtgttacacagttcagtgtggagagccgtg
ccgtgagcaatcgccattataagatggtgctggcttccactgcgcgtaac
tagtaaacaagccttatgcgcaagtgcaagagtaaattcatgcccagtca
ctgcccatctcggggcatagtaatggggtgatgagcgagcaactaatcag
gtgctgtcacgccacatcaggtgctgaaacgtcacgctgcaggctatata
agcagcgccattttcaggttcggggtcttcctcctgataagtaagcaata
aaagctttgccacagaagattccggttgtcctgagtgtgttcttgccggc
ggggacaaaagctcgggatagttcagacttaactaggaaaccttaatgta
caaaactatatttaaaagagtagagcaggcaagatggctcaatgggtggt
tgccataaagctgaggacatgagttcaatcctcaaaggccaaatcttatg
agagagccaggtcctataaagttgttcttttgattcttaaaccatggcat
aattgcatcaacacacacacctcacacacacacacacacacacacacaca
cacacacacaggcacccacacatatatacatgcatacatatagacacaca
aattttgaggaaagctcatattttatgagcttgagtattggtgtaggttt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17203969_17205008
seq2: B6Ng01-105F13.b_41_1068 (reverse)

seq1  GGCTTATGTGAATGTTCAATACAATCAGAACATAAACTTATAGGGCAAAC  50
      |||||||||||   ||||||   ||||| || ||||||| || |||||||
seq2  GGCTTATGTGA--TTTCAAT--CATCAG-ACCTAAACTT-TA-GGCAAAC  43

seq1  TATCTCAATTACATGAAAGAAAAGGAAAGTTAAATCTGTATTCTTACATT  100
       || || |||||||||||||||||||||||| ||||| || |||| ||||
seq2  -ATTTC-ATTACATGAAAGAAAAGGAAAGTT-AATCT-TA-TCTT-CATT  87

seq1  CCATTTCAACAGCAAGGGAAAGAACACCAACAAAAATGAACCACAGATAG  150
      |||||   |||||||||||||||||||||   ||||||||||||||||||
seq2  CCATT--CACAGCAAGGGAAAGAACACCA--CAAAATGAACCACAGATAG  133

seq1  AAAGTGTGGAGCTAAGAAATGAAGGG-AATGAAACAGAAAATATGGACAG  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAGTGTGGAGCTAAGAAATGAAGGGAAATGAAACAGAAAATATGGACAG  183

seq1  TTGGGAAAATAGCAAGGCC-AATGTTTGTTACAGAGCAATCAAG-AAAAT  247
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  TTGGGAAAATAGCAAGGCCAAATGTTTGTTACAGAGCAATCAAGAAAAAT  233

seq1  TGATAAACTATTAGGTAGAAAGCAGAAAAAGGAAGTGTCAGTCAGCAGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACTATTAGGTAGAAAGCAGAAAAAGGAAGTGTCAGTCAGCAGCT  283

seq1  TCTAAAGCGACTGAGGATCAGTACTGGTTCTAAAATGACTATCAGCACTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGCGACTGAGGATCAGTACTGGTTCTAAAATGACTATCAGCACTG  333

seq1  AT-AATGAAAAAGACTGGGTCTTGGTGTTGTTTCTAAAAAT-AAATAATT  395
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATAAATGAAAAAGACTGGGTCTTGGTGTTGTTTCTAAAAATAAAATAATT  383

seq1  ACCAGCACAGATTCCACAGACTCCCAGGAGGAGCTAAAGTACCTGTGCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCACAGATTCCACAGACTCCCAGGAGGAGCTAAAGTACCTGTGCAA  433

seq1  ACAAATGCTACTGGGTCTATGTCTTGTAAAATAGTATTTCCCCAAATTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCTACTGGGTCTATGTCTTGTAAAATAGTATTTCCCCAAATTGA  483

seq1  CATAACGACAAATTGAAAGTCATAAAAACCCCAAATCAAACAAATAGACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACGACAAATTGAAAGTCATAAAAACCCCAAATCAAACAAATAGACT  533

seq1  AAATTTACTTTTGAATGATTCTCAAAACAAAAGTCTAGACACAGGCCTTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACTTTTGAATGATTCTCAAAACAAAAGTCTAGACACAGGCCTTC  583

seq1  CTCTGTTCATTTTTACCAACGGAAGACACAAGAACTTAATGAACTCCAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCATTTTTACCAACGGAAGACACAAGAACTTAATGAACTCCAAC  633

seq1  ACATGACACCCAACTGCACTTTAAATATAAGATTTATGATTAAATAGACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACACCCAACTGCACTTTAAATATAAGATTTATGATTAAATAGACA  683

seq1  TAATCTACAGATTAAACTTAGTATTTGGAAAAGGGAAGAAAACATCTTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTACAGATTAAACTTAGTATTTGGAAAAGGGAAGAAAACATCTTTA  733

seq1  CTTCAACTGACGAATATAGAGTTTTTTACACAAGTAATCATTTGTTCACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTGACGAATATAGAGTTTTTTACACAAGTAATCATTTGTTCACA  783

seq1  ATGAAATTCTCAACAATGTGTGGTACTTTCAAATAAATGAAGAATATCAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTCTCAACAATGTGTGGTACTTTCAAATAAATGAAGAATATCAT  833

seq1  GGACAATCTAAAAACAAATATATCTGTTAAGTTCTAGTATAGAAATGAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATCTAAAAACAAATATATCTGTTAAGTTCTAGTATAGAAATGAAA  883

seq1  GATTTATCAATACTTTCAACAAGAAACATCATTAGAAAATAATTAGTGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATCAATACTTTCAACAAGAAACATCATTAGAAAATAATTAGTGAG  933

seq1  GAGAGGATTAACAAGAAAGGTTGAAATGGATTTCATAACCCTGGAATAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATTAACAAGAAAGGTTGAAATGGATTTCATAACCCTGGAATAAC  983

seq1  AGACAAAGGGAGCAGATATAGGCATGAAAACCCCAGCAAGAATTC  1040
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGGGAGCAGATATAGGCATGAAAACCCCAGCAAGAATTC  1028

seq1: chr8_17041546_17042549
seq2: B6Ng01-105F13.g_71_1071

seq1  GAATTCTTAAGACATACCCATATTAAAGTCTGGTTTCAATTTCAATTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGACATACCCATATTAAAGTCTGGTTTCAATTTCAATTACT  50

seq1  TGGTTTAGTAATAAGGAGTGAAGGCAAGTTAGTTTTGCATTACTAATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGTAATAAGGAGTGAAGGCAAGTTAGTTTTGCATTACTAATGAT  100

seq1  GAGACTTAGGCCCATAAATACAGACTTTGATAAGAGCTCTAAATACAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTAGGCCCATAAATACAGACTTTGATAAGAGCTCTAAATACAGAT  150

seq1  GCAGGCAGTTACTAAAGCCTTATTCCACAAAGGCAATGGGAAACAGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGTTACTAAAGCCTTATTCCACAAAGGCAATGGGAAACAGCAAT  200

seq1  CAGACAGAACTGAATCAGCCACACAGCTTTAGTGAACCTGCTAGCATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAACTGAATCAGCCACACAGCTTTAGTGAACCTGCTAGCATGTG  250

seq1  ATACAGTGTACTGAGAGCTGCCCCAGTGGATCCAGGCCAAGCCTGGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTGTACTGAGAGCTGCCCCAGTGGATCCAGGCCAAGCCTGGACTT  300

seq1  GACTTCTGCCCTAGAAAACTGTGTTACACAGTTCAGTGTGGAGAGCCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGCCCTAGAAAACTGTGTTACACAGTTCAGTGTGGAGAGCCGTG  350

seq1  CCGTGAGCAATCGCCATTATAAGATGGTGCTGGCTTCCACTGCGCGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGAGCAATCGCCATTATAAGATGGTGCTGGCTTCCACTGCGCGTAAC  400

seq1  TAGTAAACAAGCCTTATGCGCAAGTGCAAGAGTAAATTCATGCCCAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAACAAGCCTTATGCGCAAGTGCAAGAGTAAATTCATGCCCAGTCA  450

seq1  CTGCCCATCTCGGGGCATAGTAATGGGGTGATGAGCGAGCAACTAATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCATCTCGGGGCATAGTAATGGGGTGATGAGCGAGCAACTAATCAG  500

seq1  GTGCTGTCACGCCACATCAGGTGCTGAAACGTCACGCTGCAGGCTATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTCACGCCACATCAGGTGCTGAAACGTCACGCTGCAGGCTATATA  550

seq1  AGCAGCGCCATTTTCAGGTTCGGGGTCTTCCTCCTGATAAGTAAGCAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCGCCATTTTCAGGTTCGGGGTCTTCCTCCTGATAAGTAAGCAATA  600

seq1  AAAGCTTTGCCACAGAAGATTCCGGTTGTCCTGAGTGTGTTCTTGCCGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTGCCACAGAAGATTCCGGTTGTCCTGAGTGTGTTCTTGCCGGC  650

seq1  GGGGACAAAAGCTCGGGATAGTTCAGACTTAACTAGGAAACCTTAATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAAAAGCTCGGGATAGTTCAGACTTAACTAGGAAACCTTAATGTA  700

seq1  CAAAACTATATTTAAAAGAGTAGAGCAGGCAAGATGGCTCAATGGGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTATATTTAAAAGAGTAGAGCAGGCAAGATGGCTCAATGGGTGGT  750

seq1  TGCCATAAAGCTGAGGACATGAGTTCAATCCTCAAAGGCCAAATCTTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAAAGCTGAGGACATGAGTTCAATCCTCAAAGGCCAAATCTTATG  800

seq1  AGAGAGCCAGGTCCTAT-AAGTTGTTCTTTGATTTCTTAAACCATGGCAT  849
      ||||||||||||||||| ||||||||||||   |||||||||||||||||
seq2  AGAGAGCCAGGTCCTATAAAGTTGTTCTTTTGATTCTTAAACCATGGCAT  850

seq1  AATTGCATCAACACACACA-CACACACACACACACACACACACACACACA  898
      ||||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  AATTGCATCAACACACACACCTCACACACACACACACACACACACACACA  900

seq1  CACACACACAGGCACCCACACATATATACATGCATACATATAGACACACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACACACACAGGCACCCACACATATATACATGCATACATATAGACACAC-  949

seq1  AAATTTTTGAGGAGAGACTCAATATTTTATGAGCTTGAGTATTGTTGTAA  998
       || ||||||||| || ||| ||||||||||||||||||||||| ||| |
seq2  -AAATTTTGAGGAAAG-CTC-ATATTTTATGAGCTTGAGTATTGGTGT-A  995

seq1  GGTTTT  1004
      ||||||
seq2  GGTTTT  1001