BAC Information

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BAC

Clone NameB6Ng01-105P13
Chromosome8 (Build37)19 (Build37)
Map Location 31,203,047 - 31,203,5778,166,028 - 8,166,801
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUnc5d, LOC100041237
Downstream geneEG628189, LOC547008, Dusp26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105P13.bB6Ng01-105P13.g
ACCDH913848DH913849
length9841,132
definitionDH913848|Mus musculus domesticus DNA, BAC clone: B6Ng01-105P13, 5' end.DH913849|Mus musculus domesticus DNA, BAC clone: B6Ng01-105P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,203,047 - 31,203,577)(8,166,028 - 8,166,801)
sequence
gaattctttgtttagctctgtgccctaattttaaataaggttatttggtt
ctctggaggctaacttcttgagtttttttgtatatattttatattcatcc
tctattggatatagggttggtaaagatattttcccaatctggtggttgcc
attttgtcctattgccagtgtcctttgccttacagaagctttggaatttt
atgaggtcccatttgtgatccatgtgttatctttgataaaccaatatgga
tatatatatggaaagctatagatcacattagtgctactctttcagctctg
ttctttaactcttttgatgagtagcaatctatgttttacctagcatccct
aaggaaccatgatgtcagtatcacacagaagagtttgagtgccctaagaa
acaccatatactccacgaacttatccttgcttcccacacaactttgatgg
tgatatatcctataacttcctctataattttacattttagtgattagagt
gtgaatagaaccacaatacaatgtggagtttttgcagctcaatttttccc
ctgtggcattccgtatttaaggtccctttaagtcttcatggctgacagct
tgtttcattgttaaaaaatatcccagtataagtacataaaagtgtatttc
tcactatctattgaagaatatattagcagcttccaggtttgggaaatcat
caataaaactgctataaacttccatgtatatttccttgtgtgatcataaa
ttcttaaacatttaattacgtatgcatatatgtgttatgtatttattatg
tgttatgtatgtatgtcaacatggggtctggctttgtactctaggctggt
tagaactcaatgggataaaccacattggtctcaaacttgtaaccattatt
ctgctacagatttatgctttctagattaggagtcaacaccataataatct
atcacaaatgagtttgatagatacaaaatatcag
gaattcagaatgaaggagtgacggtagatttgaagcacaatgtataagga
gaggggcttaagagaaagccctcactgtaaaaatcagcagaagcctaaac
cactactgatactagccaacaccagctaagtgggagacaagtagactctt
ccttacccataagtaaggtgctttacagcttattcagcaagttaaactgt
ttccattcaacttttcttttttttttcattttttattaggtatttagctc
attttcatttccaatgctataccaaaagtcccccatacccacccaccccc
actcctctacccaaccactccccctttttggccctagcgttcccctgtac
tagggcatataaagtttgcaaatccatgggcctctctttgcagtgatggc
cgactaggccatcttttgatacatatgcagctagagacaagagctcccgg
gtactgcttagttcatattgttgttccacctatagggttgcagtttcctt
tagttccttgggtgctttctctagttccttcattgggggccatgtggtcc
attcaatagctgactgtgagcatccacttctgtgtttgctaggccctggc
acagtctcacaagagacagctatatctgggtcctttcagcaaaatcttgc
tagtgtatgcaatggtgtctgcatttggaagctgatcatgggatggatct
ctggatatggcaatcactagatggtccatcctttcgtcacacttccaaat
tttgtctctgtaactcctaccatgggtgttttgtttcctattctaagaag
gggcaaagtgtccacactttggtcttcgttctcttgagtttaatgtgttt
agcaaatttgtatcttatatcttgggtatcctaagtttctgggctaatat
ccacttaatcagtgagtacatattgtgaaagttcctttgtgattgggtac
ttcactcagatgatgccctccaggtccatccatttggctaggaatttcat
aattcatccctttaataggctgagtagattccattggtaataggtaccac
attttcttgatccctttcctctgtggagagcatcttgggttctttcagct
ctcgggtcattaaaataagcggcatgaacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_31203047_31203577
seq2: B6Ng01-105P13.b_495_1026

seq1  ATATATCCTATAACTTCCTCTATAATTTTACATTTTAGTGATTAGAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCTATAACTTCCTCTATAATTTTACATTTTAGTGATTAGAGTGT  50

seq1  GAATAGAACCACAATACAATGTGGAGTTTTTGCAGCTCAATTTTTCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAACCACAATACAATGTGGAGTTTTTGCAGCTCAATTTTTCCCCT  100

seq1  GTGGCATTCCGTATTTAAGGTCCCTTTAAGTCTTCATGGCTGACAGCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATTCCGTATTTAAGGTCCCTTTAAGTCTTCATGGCTGACAGCTTG  150

seq1  TTTCATTGTTAAAAAATATCCCAGTATAAGTACATAAAAGTGTATTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTTAAAAAATATCCCAGTATAAGTACATAAAAGTGTATTTCTC  200

seq1  ACTATCTATTGAAGAATATATTAGCAGCTTCCAGGTTTGGGAAATCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTATTGAAGAATATATTAGCAGCTTCCAGGTTTGGGAAATCATCA  250

seq1  ATAAAACTGCTATAAACTTCCATGTATATTTCCTTGTGTGATCATAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTGCTATAAACTTCCATGTATATTTCCTTGTGTGATCATAAATT  300

seq1  CTTAAACATTTAATTACGTATGCATATATGTGTTATGTATTTATTATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACATTTAATTACGTATGCATATATGTGTTATGTATTTATTATGTG  350

seq1  TTATGTATGTATGTCAACAT-GGGTCTGGCTTTGTACTCTAGGCTGGTTT  399
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  TTATGTATGTATGTCAACATGGGGTCTGGCTTTGTACTCTAGGCTGG-TT  399

seq1  AGAACTCAAT-GGATAAACCACATTGGTCTCAAACTTGTAACCCATATTC  448
      |||||||||| ||||||||||||||||||||||||||||||||  |||| 
seq2  AGAACTCAATGGGATAAACCACATTGGTCTCAAACTTGTAACCATTATT-  448

seq1  CTGCTACAGATTTATGC-TTCTAGAATTAGAAGTCAACACCATAAT-ACC  496
      ||||||||||||||||| |||||| ||||| ||||||||||||||| | |
seq2  CTGCTACAGATTTATGCTTTCTAG-ATTAGGAGTCAACACCATAATAATC  497

seq1  TATCACAAATGAGTTTGATAGATACAAAATATCAG  531
      |||||||||||||||||||||||||||||||||||
seq2  TATCACAAATGAGTTTGATAGATACAAAATATCAG  532

seq1: chr19_8166028_8166801
seq2: B6Ng01-105P13.g_540_1202 (reverse)

seq1  TATGTTCATAGCAGCCTTATTTATAATAGCCAGA-AGCTGGAAAGAACCC  49
      ||||||||| || | ||||||| ||||  || || |||| ||||||||||
seq2  TATGTTCAT-GCCG-CTTATTT-TAATGACCCGAGAGCT-GAAAGAACCC  46

seq1  -AGATGCCCCTCAACAAAGG-AATGGATACAGAAAATGTGGTACAT-TTA  96
       ||||| | ||| ||| ||| || ||||  |||||||||||||| | |||
seq2  AAGATG-CTCTCCACAGAGGAAAGGGATCAAGAAAATGTGGTACCTATTA  95

seq1  CACAATGGAGTACTACTCCG-CTATTAAAAAGAATGAATTTAAGAAATTT  145
      | ||||||| | |||||| | ||||| ||| | ||||| ||| |||||| 
seq2  C-CAATGGAAT-CTACTCAGCCTATT-AAAGGGATGAA-TTATGAAATTC  141

seq1  CTAGGCAAATGGATGGACCTGGAGGGCATCATCCCGAGTGAGGTAACCCA  195
      |||| ||||||||||||||||||||||||||| | |||||| || |||||
seq2  CTAGCCAAATGGATGGACCTGGAGGGCATCAT-CTGAGTGAAGT-ACCCA  189

seq1  ATCACAAAGGAACTCTCACAATATGTACTCACTGA-TAAGTGGATATTAG  244
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  ATCACAAAGGAACTTTCACAATATGTACTCACTGATTAAGTGGATATTAG  239

seq1  CCCTGAATCTTAGGATATCCAAGATATAAGATA-TAATTTGCTAAACACA  293
      ||| ||| ||||||||| |||||||||||||||  |||||||||||||||
seq2  CCCAGAAACTTAGGATACCCAAGATATAAGATACAAATTTGCTAAACACA  289

seq1  TTTAACTCAAGAGAAC-AAGACCAAAGTGTGGACACTTTGCCCCTTCTTA  342
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTAAACTCAAGAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTA  339

seq1  GAATAGGAAACAAAACACCCATGGAAGGAGTTACAGAGACAAAATTTGGA  392
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAATAGGAAACAAAACACCCATGGTAGGAGTTACAGAGACAAAATTTGGA  389

seq1  AGTGAATCCATGAAACTCAAGAAGGAAGACCCAAGTGTGGACTCTTTGCC  442
      ||                                                
seq2  AG------------------------------------------------  391

seq1  CCTTCTTAGAATTGGGAACAAGACATCCATGGAAGGAGTTACAGAGACAA  492
                                                        
seq2  --------------------------------------------------  391

seq1  AGTTTGGAGCTGAGACAAAAGGATGGACCATCTATTGATTGCCATATCCA  542
                || ||| ||||||||||||||||| |||||||||||||||
seq2  ----------TGTGACGAAAGGATGGACCATCTAGTGATTGCCATATCCA  431

seq1  GAGATACATCCCATGATCACCTTCCAAACGCTGACACCATTGCATACACT  592
      ||||| ||||||||||||| |||||||| || ||||||||||||||||||
seq2  GAGATCCATCCCATGATCAGCTTCCAAATGCAGACACCATTGCATACACT  481

seq1  AGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTAAGACTA  642
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  AGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACTG  531

seq1  TGCCAGAGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTGTTGAA  692
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCCAGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGAA  581

seq1  TGCACCACAGGGCCCCCAATGGAGGAATTAGAGAAAGCACCCAAGGAACT  742
      || |||||| ||||||||||| ||||| ||||||||||||||||||||||
seq2  TGGACCACATGGCCCCCAATGAAGGAACTAGAGAAAGCACCCAAGGAACT  631

seq1  AAAGGGAACTGCAACCCTATAGGTGGAACAAC  774
      ||||| ||||||||||||||||||||||||||
seq2  AAAGGAAACTGCAACCCTATAGGTGGAACAAC  663