BAC Information

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BAC

Clone NameB6Ng01-106B22
Chromosome5 (Build37)8 (Build37)
Map Location 108,355,470 - 108,355,51165,921,294 - 65,922,371
singlet/doubletsingletsinglet
Overlap gene2900024C23Rik
Upstream geneCdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5
Downstream geneLOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106B22.bB6Ng01-106B22.g
ACCDH913948DH913949
length6831,075
definitionDH913948|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B22, 5' end.DH913949|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(108,355,470 - 108,355,511)(65,921,294 - 65,922,371)
sequence
gaattctttgtttagatttgttctccacttttaattgggttgttttaact
ctatatatttggatgttacctatttatttgatgtgtagttgacagaaaat
attttctcattctgtaggctgcttctttatctaatggtatcatttacata
aaaaacttttcattttcataggatcccatttattaatagtttttgttgtt
atctgtgccaatggcattctgttcataaagttcttttatgtgccaataag
tttaaggctattcttcactttctcttcatcatatttaatgtatctggcct
caggttcatgtgcttgacccactggaagttgatttttgtgcatggtgaga
gatgaattcatttggattcttattcacacagccattcaattgaccaccac
catttgtggaaaatgcagtcttttttacaatgtacatttccgacttattt
ataaaaacatagattctcataggtgtgtagatttatgtctgggtcatcaa
tttaattcacttaatcaatgtgtctgcttttaattcaataccatgctgat
tttattattatttctttgtattgcaatttgaggtgaagatagcgatatgt
ccagaagtactattgttagaatggatttagctgtcctcaggttttgtggt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcattattgactcagcactctgaggtcataaagaatccgagaacca
atcataatgtgttggcttaatgtttagtatttgtgttgatgttatatgaa
ccaaccacgccaactaacacacatgcatgcatgtgtatttacacacacac
acacacacacacacacacacacacacacacaatctaaagttattctcaga
ggaaatatactgtacatctgacctgtacagcgggcccagttattcgttgg
tctccaggggactcttgaaaccaaatgggggatgagagagaaacggagcc
aagcacagaaaagacatggagtcaatctgaatcttgtcaaggtctcattg
tgttcagcaaaacttgtagtttttatacacaaagatcaaaggggaaataa
cccttacgcagaagggcaggggaggggacagtggtaattttccttggtga
ctacaatgatatctaaaagtacatcttgtggttatgacatctgctcttta
cgtcagtcaggtctagcatcatctcgcggtaattgttggtgaccttcatc
tggacttagtcagcttgaggagggggtccatctgggaatagtccgttggt
gacctttgtctggacttagtcaccttggggaggagttccaactttatgtc
ctaagacttggtagttcacttggattattataaagaatttagttagggct
cccaacatccatccatattccagagagtaactgctaaaaagttggtgtca
tctataaacctctgttgcagttatgatggtttccatgaatgatattattc
tagacagtaggaatattagatgcccaaaaattgactaaacatagggggac
acagaaatttacctatcagaagacagttatttttactaaatgatgatttt
gctagattaagaataaagatataagaagcaacatacagacttacattttc
tgtctggtgagaaggagtggcttttattcacatgactgctagaggtagtt
acttaaatactgggaaaatcttttctggctttgctcagtgtaatatttat
caatgtcctcataagattgcctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_108355470_108355511
seq2: B6Ng01-106B22.b_681_722 (reverse)

seq1  CACACACACACACACACACACACACACACACACACCACAAAA  42
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACCACAAAA  42

seq1: chr8_65921294_65922371
seq2: B6Ng01-106B22.g_65_1139 (reverse)

seq1  AAAAGGCATTCTTATGAGAACA-TGATAAATATTACACTGAGCATAGGCT  49
      |||||||| ||||||||| ||| ||||||||||||||||||||| || | 
seq2  AAAAGGCAATCTTATGAGGACATTGATAAATATTACACTGAGCAAAGCCA  50

seq1  AGAAAGATATTCTCAGTATTTAAGTAACTACCTCTAGCAGGTCATGGTGA  99
        |||||| ||| |||||||||||||||||||||||||| ||||| ||||
seq2  GAAAAGATTTTCCCAGTATTTAAGTAACTACCTCTAGCA-GTCAT-GTGA  98

seq1  ATAAAAGCCACTTCCTTCTCACCAGACAGAAAATGTAAGTCTGTATGTTT  149
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  ATAAAAGCCAC-TCCTTCTCACCAGACAGAAAATGTAAGTCTGTATG-TT  146

seq1  GCTTCTTAATATCTTTATTCTTAATCTAGCAAAATCATCATTTAGTAAAA  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTT-ATATCTTTATTCTTAATCTAGCAAAATCATCATTTAGTAAAA  195

seq1  ATAACTGTCTTCTGATAGGTAAA-TTCTGTGTCCCCCTATGTTTAGTCAA  248
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATAACTGTCTTCTGATAGGTAAATTTCTGTGTCCCCCTATGTTTAGTCAA  245

seq1  TTTTTGGGCATCTAATATTCCTACTGTCTAGAATAATATCATTCATGGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGCATCTAATATTCCTACTGTCTAGAATAATATCATTCATGGAA  295

seq1  ACCATCATAACTGCAACAGAGGTTTATAGATGACACCAACTTTTTAGCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATAACTGCAACAGAGGTTTATAGATGACACCAACTTTTTAGCAG  345

seq1  TTACTCTCTGGAATATGGATGGATGTTGGGAGCCCTAACTAAATTCTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTCTGGAATATGGATGGATGTTGGGAGCCCTAACTAAATTCTTTA  395

seq1  TAATAATCCAAGTGAACTACCAAGTCTTAGGACATAAAGTTGGAACTCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATCCAAGTGAACTACCAAGTCTTAGGACATAAAGTTGGAACTCCT  445

seq1  CCCCAAGGTGACTAAGTCCAGACAAAGGTCACCAACGGACTATTCCCAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGGTGACTAAGTCCAGACAAAGGTCACCAACGGACTATTCCCAGA  495

seq1  TGGACCCCCTCCTCAAGCTGACTAAGTCCAGATGAAGGTCACCAACAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCCCTCCTCAAGCTGACTAAGTCCAGATGAAGGTCACCAACAATT  545

seq1  ACCGCGAGATGATGCTAGACCTGACTGACGTAAAGAGCAGATGTCATAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCGAGATGATGCTAGACCTGACTGACGTAAAGAGCAGATGTCATAAC  595

seq1  CACAAGATGTACTTTTAGATATCATTGTAGTCACCAAGGAAAATTACCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGATGTACTTTTAGATATCATTGTAGTCACCAAGGAAAATTACCAC  645

seq1  TGTCCCCTCCCCTGCCCTTCTGCGTAAGGGTTATTTCCCCTTTGATCTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCTCCCCTGCCCTTCTGCGTAAGGGTTATTTCCCCTTTGATCTTT  695

seq1  GTGTATAAAAACTACAAGTTTTGCTGAACACAATGAGACCTTGACAAGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAAAAACTACAAGTTTTGCTGAACACAATGAGACCTTGACAAGAT  745

seq1  TCAGATTGACTCCATGTCTTTTCTGTGCTTGGCTCCGTTTCTCTCTCATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGACTCCATGTCTTTTCTGTGCTTGGCTCCGTTTCTCTCTCATC  795

seq1  CCCCATTTGGTTTCAAGAGTCCCCTGGAGACCAACGAATAACTGGGCCCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTGGTTTCAAGAGTCCCCTGGAGACCAACGAATAACTGGGCCCG  845

seq1  CTGTACAGGTCAGATGTACAGTATATTTCCTCTGAGAATAACTTTAGATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGGTCAGATGTACAGTATATTTCCTCTGAGAATAACTTTAGATT  895

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATACACAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATACACAT  945

seq1  GCATGCATGTGTGTTAGTTGGCGTGGTTGGTTCATATAACATCAACACAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATGTGTGTTAGTTGGCGTGGTTGGTTCATATAACATCAACACAA  995

seq1  ATACTAAACATTAAGCCAACACATTATGATTGGTTCTCGGATTCTTTATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAACATTAAGCCAACACATTATGATTGGTTCTCGGATTCTTTATG  1045

seq1  ACCTCAGAGTGCTGAGTCAATAATGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  ACCTCAGAGTGCTGAGTCAATAATGAATTC  1075