BAC Information

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BAC

Clone NameB6Ng01-106C22
Chromosome8 (Build37)
Map Location 17,889,670 - 18,060,368
singlet/doubletdoublet
Overlap geneLOC665638
Upstream geneCsmd1
Downstream geneLOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106C22.bB6Ng01-106C22.g
ACCDH913996DH913997
length4941,116
definitionDH913996|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C22, 5' end.DH913997|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,889,670 - 17,890,169)(18,059,240 - 18,060,368)
sequence
attaaagtgtaaggcatctataaaagaacacaccaaaatataattaacta
agattattagaatccaaaagagaaattgatggacagagctgaaaaaggga
tagagcctttaatcccatgtcccaagaggcaaaggaaggcagatctctat
gagttccaggacagctgaagctacatagagaaaccttgcctaaaaattaa
ttaattagttagttaattaattaaaagttttgggccatgtagttaaaaat
gggagcaaatacaataaaattcaaaaaaataatttaatatatgttttatt
ttttgtttgttttttcccctctgacaatattgctgatgatattcaacttg
tgtctctagctgcatatgtatcagaagatggcctggttggccatcactgg
aaagagaggcccattggtcttgcaaactttatatgccccagtacagggga
acgccagggccaagaagtgggaatgggtgagtagggggtgggga
gaattccaagcatgggagccacactggggaaaatgaagatatcagtaatt
ataagaagcagcatccctcacaagaaaggtccatgcagacattctagtat
tgcccaagacaattctgctaacgttactgccctgaagatgcctgtatctt
cttccacagaactgaagctcaaataacaacttgctgaaaactacccactg
gggaagtggaagaatttaaccaagccttgttggatagaaaatgatacagt
ggaaagcattctggttaagacctttgggatgtgagttctaatctctgatg
aggtattctgtgcttatataactcagggaaagttgagagattgctctgag
attcagcttgcttatctctaaagggttgaagttttccctgcaacactctt
tccagtacttacagtctcagacttcaaggaaatttctagacttgtaaccc
cttctcttgtctccacattgcttgcagagtcaccatgtttatcacctctc
aatttatcatgcccctaggatgatggagatttaagttaactgcattagtc
aggatctcctggaaagcagatttgagtcacagagcacaatattgacggtt
tctctggggacccaaagctggagacttgagagtgggaagagcagcagcat
agcaaacaggagcagctacagctggtgcaattcatccgctcagcatagga
aggatgcttgaaagttaagcaagaagaaaatgttccttagagcattcccc
agagggagtctgtctgtctgtctgtctgtctgtctgtcttacatgggaaa
taactcccttgcatgcttaagtggcattttctaactgcttaaatcacacc
tcaacctatatgtgaaattatacaggctctattattaaacttagttccaa
atgacttgtagatgacctattccctctttctgggttgatgctgtgacatg
aatcctgttttactttcctctgggaaatgaaaggtctcattttatttcaa
agggagaaggggtacaaatcagcatgcagtcaattcttttctctggaagc
ttatggtccctgagacttctacaaatctctgaataggttgggggctaaag
gtctgttgctcgattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17889670_17890169
seq2: B6Ng01-106C22.b_46_545

seq1  GAATTCATTAAAGTGTAAGGCATCTATAAAAGAACACACCAAAATATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAGTGTAAGGCATCTATAAAAGAACACACCAAAATATAAT  50

seq1  TAACTAAGATTATTAGAATCCAAAAGAGAAATTGATGGACAGAGCTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGATTATTAGAATCCAAAAGAGAAATTGATGGACAGAGCTGAAA  100

seq1  AAGGGATAGAGCCTTTAATCCCATGTCCCAAGAGGCAAAGGAAGGCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATAGAGCCTTTAATCCCATGTCCCAAGAGGCAAAGGAAGGCAGAT  150

seq1  CTCTATGAGTTCCAGGACAGCTGAAGCTACATAGAGAAACCTTGCCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGAGTTCCAGGACAGCTGAAGCTACATAGAGAAACCTTGCCTAAA  200

seq1  AATTAATTAATTAGTTAGTTAATTAATTAAAAGTTTTGGGCCATGTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTAATTAGTTAGTTAATTAATTAAAAGTTTTGGGCCATGTAGTT  250

seq1  AAAAATGGGAGCAAATACAATAAAATTCAAAAAAATAATTTAATATATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGGAGCAAATACAATAAAATTCAAAAAAATAATTTAATATATGT  300

seq1  TTTATTTTTTGTTTGTTTTTTCCCCTCTGACAATATTGCTGATGATATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTGTTTGTTTTTTCCCCTCTGACAATATTGCTGATGATATTC  350

seq1  AACTTGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTGGTTGGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTGGTTGGCCAT  400

seq1  CACTGGAAAGAGAGGCCCATTGGTCTTGCAAACTTTATATGCCCCAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAAAGAGAGGCCCATTGGTCTTGCAAACTTTATATGCCCCAGTAC  450

seq1  AGGGGAACGCCAGGGCCAAGAAGTGGGAATGGGTGAGTAGGGGGTGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAACGCCAGGGCCAAGAAGTGGGAATGGGTGAGTAGGGGGTGGGGA  500

seq1: chr8_18059240_18060368
seq2: B6Ng01-106C22.g_66_1181 (reverse)

seq1  CAATCAGAGCAACAGAAACTTTAGCCCCCAAACCCTTTATTCAGAGATTT  50
      ||||| ||||||||| | ||||||||||||| |    |||||||||||||
seq2  CAATC-GAGCAACAG-ACCTTTAGCCCCCAACC----TATTCAGAGATTT  44

seq1  GTAGAAGTTCTCAGGGACCATAAGCTTCCAGAAGAAAAGAATTGACTGCA  100
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  GTAGAAG-TCTCAGGGACCATAAGCTTCCAG-AGAAAAGAATTGACTGCA  92

seq1  TGCTTGAATTTGTACCCC-TCTCCCTTTGAAATAAAATGAAGACCTTTTC  149
      ||||   ||||||||||| |||||||||||||||||||| ||||| ||||
seq2  TGCT--GATTTGTACCCCTTCTCCCTTTGAAATAAAATG-AGACC-TTTC  138

seq1  ATTTCCCAGAGGAAAGTAAAACCAGGATTCATGTCACAGCATTCAACCCA  199
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  ATTTCCCAGAGGAAAGTAAAA-CAGGATTCATGTCACAGCA-TCAACCCA  186

seq1  GAAAGAGGGAATAGGTCATCTACAAGTCATTTGGAACTAAGTTTAATAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGGAATAGGTCATCTACAAGTCATTTGGAACTAAGTTTAATAAT  236

seq1  AGAGCCTGTATAATTTCACATATAGGTTGAGGTGTGATTTAAGCAGTTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGTATAATTTCACATATAGGTTGAGGTGTGATTTAAGCAGTTAG  286

seq1  AAAATGCCACTTAAGCATGCAAGGGAGTTATTTCCCATGTAAGACAGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCCACTTAAGCATGCAAGGGAGTTATTTCCCATGTAAGACAGACA  336

seq1  GACAGACAGACAGACAGACAGACTCCCTCTGGGGAATGCTCTAAGGAACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGACAGACAGACAGACTCCCTCTGGGGAATGCTCTAAGGAACA  386

seq1  TTTTCTTCTTGCTTAACTTTCAAGCATCCTTCCTATGCTGAGCGGATGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTTGCTTAACTTTCAAGCATCCTTCCTATGCTGAGCGGATGAA  436

seq1  TTGCACCAGCTGTAGCTGCTCCTGTTTGCTATGCTGCTGCTCTTCCCACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCAGCTGTAGCTGCTCCTGTTTGCTATGCTGCTGCTCTTCCCACT  486

seq1  CTCAAGTCTCCAGCTTTGGGTCCCCAGAGAAACCGTCAATATTGTGCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCTCCAGCTTTGGGTCCCCAGAGAAACCGTCAATATTGTGCTCT  536

seq1  GTGACTCAAATCTGCTTTCCAGGAGATCCTGACTAATGCAGTTAACTTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCAAATCTGCTTTCCAGGAGATCCTGACTAATGCAGTTAACTTAA  586

seq1  ATCTCCATCATCCTAGGGGCATGATAAATTGAGAGGTGATAAACATGGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCATCATCCTAGGGGCATGATAAATTGAGAGGTGATAAACATGGTG  636

seq1  ACTCTGCAAGCAATGTGGAGACAAGAGAAGGGGTTACAAGTCTAGAAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAAGCAATGTGGAGACAAGAGAAGGGGTTACAAGTCTAGAAATT  686

seq1  TCCTTGAAGTCTGAGACTGTAAGTACTGGAAAGAGTGTTGCAGGGAAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAGTCTGAGACTGTAAGTACTGGAAAGAGTGTTGCAGGGAAAAC  736

seq1  TTCAACCCTTTAGAGATAAGCAAGCTGAATCTCAGAGCAATCTCTCAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCCTTTAGAGATAAGCAAGCTGAATCTCAGAGCAATCTCTCAACT  786

seq1  TTCCCTGAGTTATATAAGCACAGAATACCTCATCAGAGATTAGAACTCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGAGTTATATAAGCACAGAATACCTCATCAGAGATTAGAACTCAC  836

seq1  ATCCCAAAGGTCTTAACCAGAATGCTTTCCACTGTATCATTTTCTATCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAAGGTCTTAACCAGAATGCTTTCCACTGTATCATTTTCTATCCA  886

seq1  ACAAGGCTTGGTTAAATTCTTCCACTTCCCCAGTGGGTAGTTTTCAGCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTTGGTTAAATTCTTCCACTTCCCCAGTGGGTAGTTTTCAGCAA  936

seq1  GTTGTTATTTGAGCTTCAGTTCTGTGGAAGAAGATACAGGCATCTTCAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATTTGAGCTTCAGTTCTGTGGAAGAAGATACAGGCATCTTCAGG  986

seq1  GCAGTAACGTTAGCAGAATTGTCTTGGGCAATACTAGAATGTCTGCATGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAACGTTAGCAGAATTGTCTTGGGCAATACTAGAATGTCTGCATGG  1036

seq1  ACCTTTCTTGTGAGGGATGCTGCTTCTTATAATTACTGATATCTTCATTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTTGTGAGGGATGCTGCTTCTTATAATTACTGATATCTTCATTT  1086

seq1  TCCCCAGTGTGGCTCCCATGCTTGGAATTC  1129
      ||||||||||||||||||||||||||||||
seq2  TCCCCAGTGTGGCTCCCATGCTTGGAATTC  1116