BAC Information

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BAC

Clone NameB6Ng01-107A09
Chromosome8 (Build37)
Map Location 113,952,080 - 114,131,453
singlet/doubletdoublet
Overlap geneWdr59, Znrf1
Upstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h
Downstream geneLdhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107A09.bB6Ng01-107A09.g
ACCDH914603DH914604
length2921,147
definitionDH914603|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A09, 5' end.DH914604|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,952,080 - 113,952,371)(114,130,294 - 114,131,453)
sequence
catccctggaacccacatggtggaaggagagaaaggactctctaaagtcc
ttcacacttgaaggactgtcctctggcctcactgtggcacacacataaac
gaagataaacacatgcaatgaagtagatagtaagcaagcacagtaggttt
ttaaaaagaacatcacagtgcaacattgtagtcacaggtttgtaacaatg
ctgctgtaaacaaaccctggctattatgtgtgctggaatcttgtcttgtt
tgtttgttttgttgttgttgttgtttggttggggtttttttg
gaattcactgcatgcttgcaaagactgaatgagacgacatcatcacgagg
tctacagcagcgattgaggaggaaggatgagaactaaggagacgaactcg
cagaccaaggagggcacgggtactttccacactgccaatgtggaaacagg
tctctacttgcaatggtaacaggtaaacggtattttacacctacggagtc
atttctatagacagctgctgtcttccatggctgcttctttataacacggt
gtaaggactatcaagaggcaggcagtacactgactctacttcacagaaac
agtgaaaagcccaagtaacttgttcaacatgcactgcgccggaaagagac
agagctgacccccagccagcttgacctcgagccagctgctgctgtggcct
ctggctgacaagcgcaggagaaggggtcagcggcaagcacaacacagaca
caggtcttcaagtcacttccgactttctgccctgcccacacccacggttc
cagataatccctaaacatggatgacactttttctaggaatttgttactat
agaagatctgaatccagaatcagcacagtcctcttggcatggggcccaca
gcactgctatacgatgctggcttattacctttcaaacggaagtaaaggca
cagtgagagggacagaaaaactggagagctaaaggggaaaggctaatgtc
cccaccttctttcccgaaaggtcatccgatgagcaagacggactctacct
ctttaccgccccaatcttttcttgtatctttccagtcttgattcagcacc
aacagccctatggaatgacaaatactgatatttatgaactatctaaaggt
taaaacttgttgaaaatctttatcccattttggaaggaagtctgtactga
atggaactcggccttgcacaccagaagtctgcagaggtggccaggccatg
actttctcagcctcctcagagcctcagcactgtcctcagcactgttcagt
gcagctttattttcccaggtgattccttcagatgctctgattctggagtg
gggcagcctgtggctcccgactcctcccctcctgtccccaacactgtgac
tgtcactagtaaacctgcctggctagaccagcctgtcctgtcagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113952080_113952371
seq2: B6Ng01-107A09.b_53_344

seq1  CATCCCTGGAACCCACATGGTGGAAGGAGAGAAAGGACTCTCTAAAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGGAACCCACATGGTGGAAGGAGAGAAAGGACTCTCTAAAGTCC  50

seq1  TTCACACTTGAAGGACTGTCCTCTGGCCTCACTGTGGCACACACATAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTTGAAGGACTGTCCTCTGGCCTCACTGTGGCACACACATAAAC  100

seq1  GAAGATAAACACATGCAATGAAGTAGATAGTAAGCAAGCACAGTAGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAACACATGCAATGAAGTAGATAGTAAGCAAGCACAGTAGGTTT  150

seq1  TTAAAAAGAACATCACAGTGCAACATTGTAGTCACAGGTTTGTAACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGAACATCACAGTGCAACATTGTAGTCACAGGTTTGTAACAATG  200

seq1  CTGCTGTAAACAAACCCTGGCTATTATGTGTGCTGGAATCTTGTCTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTAAACAAACCCTGGCTATTATGTGTGCTGGAATCTTGTCTTGTT  250

seq1  TGTTTGTTTTGTTGTTGTTGTTGTTTGGTTGGGGTTTTTTTG  292
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTGTTGTTGTTGTTGTTTGGTTGGGGTTTTTTTG  292

seq1: chr8_114130294_114131453
seq2: B6Ng01-107A09.g_67_1213 (reverse)

seq1  GTGCTGACAGGAGACAGGCTGCT-TAGCCA-GCAGGTTATAACTAGTGGC  48
      ||||||||||  ||||||||| | |||||| ||||||  | ||||||| |
seq2  GTGCTGACAG--GACAGGCTGGTCTAGCCAGGCAGGT--TTACTAGTGAC  46

seq1  AGTCACAAGTGTTGAGGACAGGAGTGGGAGAAGTTCTGTGAG-CACAGGC  97
      |||||| ||||||| ||||||||| ||||| |||   | ||| |||||||
seq2  AGTCAC-AGTGTTGGGGACAGGAG-GGGAGGAGT--CGGGAGCCACAGGC  92

seq1  TGCCCCCACCTCCAGAATCAAGGAGCATCTTGAAGAGACCACCTGGGAAA  147
      ||||||   |||||||||||  ||||||| |||||  | |||||||||||
seq2  TGCCCC--ACTCCAGAATCA--GAGCATC-TGAAGGAATCACCTGGGAAA  137

seq1  ATAAAGCTGCCACTGGAACAGTGCTGAGGACAGTGCTGAGGCTCTGAGGA  197
      ||||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTG-CACT-GAACAGTGCTGAGGACAGTGCTGAGGCTCTGAGGA  185

seq1  GGCCTGAGAAAGTCATGGCCTGGCCACCTCTGCAGACTTCTGGTGTGCAA  247
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-CTGAGAAAGTCATGGCCTGGCCACCTCTGCAGACTTCTGGTGTGCAA  234

seq1  GGCCGAGTTCCATTCAGTACAGACTTCCTTCCAAAATGGGATAAAGATTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGAGTTCCATTCAGTACAGACTTCCTTCCAAAATGGGATAAAGATTT  284

seq1  TCAACAAGTTTTAACCTTTAGATAGTTCATAAATATCAGTATTTGTCATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGTTTTAACCTTTAGATAGTTCATAAATATCAGTATTTGTCATT  334

seq1  CCATAGGGCTGTTGGTGCTGAATCAAGACTGGAAAGATACAAGAAAAGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGGCTGTTGGTGCTGAATCAAGACTGGAAAGATACAAGAAAAGAT  384

seq1  TGGGGCGGTAAAGAGGTAGAGTCCGTCTTGCTCATCGGATGACCTTTCGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCGGTAAAGAGGTAGAGTCCGTCTTGCTCATCGGATGACCTTTCGG  434

seq1  GAAAGAAGGTGGGGACATTAGCCTTTCCCCTTTAGCTCTCCAGTTTTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGGTGGGGACATTAGCCTTTCCCCTTTAGCTCTCCAGTTTTTCT  484

seq1  GTCCCGCTCACTGTGCCTTTACTTCCGTTTGAAAGGTAATAAGCCAGCAT  547
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTCACTGTGCCTTTACTTCCGTTTGAAAGGTAATAAGCCAGCAT  534

seq1  CGTATAGCAGTGCTGTGGGCCCCATGCCAAGAGGACTGTGCTGATTCTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATAGCAGTGCTGTGGGCCCCATGCCAAGAGGACTGTGCTGATTCTGG  584

seq1  ATTCAGATCTTCTATAGTAACAAATTCCTAGAAAAAGTGTCATCCATGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATCTTCTATAGTAACAAATTCCTAGAAAAAGTGTCATCCATGTT  634

seq1  TAGGGATTATCTGGAACCGTGGGTGTGGGCAGGGCAGAAAGTCGGAAGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATTATCTGGAACCGTGGGTGTGGGCAGGGCAGAAAGTCGGAAGTG  684

seq1  ACTTGAAGACCTGTGTCTGTGTTGTGCTTGCCGCTGACCCCTTCTCCTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGACCTGTGTCTGTGTTGTGCTTGCCGCTGACCCCTTCTCCTGC  734

seq1  GCTTGTCAGCCAGAGGCCACAGCAGCAGCTGGCTCGAGGTCAAGCTGGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCAGCCAGAGGCCACAGCAGCAGCTGGCTCGAGGTCAAGCTGGCT  784

seq1  GGGGGTCAGCTCTGTCTCTTTCCGGCGCAGTGCATGTTGAACAAGTTACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCAGCTCTGTCTCTTTCCGGCGCAGTGCATGTTGAACAAGTTACT  834

seq1  TGGGCTTTTCACTGTTTCTGTGAAGTAGAGTCAGTGTACTGCCTGCCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTTCACTGTTTCTGTGAAGTAGAGTCAGTGTACTGCCTGCCTCT  884

seq1  TGATAGTCCTTACACCGTGTTATAAAGAAGCAGCCATGGAAGACAGCAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTCCTTACACCGTGTTATAAAGAAGCAGCCATGGAAGACAGCAGC  934

seq1  TGTCTATAGAAATGACTCCGTAGGTGTAAAATACCGTTTACCTGTTACCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATAGAAATGACTCCGTAGGTGTAAAATACCGTTTACCTGTTACCA  984

seq1  TTGCAAGTAGAGACCTGTTTCCACATTGGCAGTGTGGAAAGTACCCGTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTAGAGACCTGTTTCCACATTGGCAGTGTGGAAAGTACCCGTGC  1034

seq1  CCTCCTTGGTCTGCGAGTTCGTCTCCTTAGTTCTCATCCTTCCTCCTCAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGGTCTGCGAGTTCGTCTCCTTAGTTCTCATCCTTCCTCCTCAA  1084

seq1  TCGCTGCTGTAGACCTCGTGATGATGTCGTCTCATTCAGTCTTTGCAAGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGCTGTAGACCTCGTGATGATGTCGTCTCATTCAGTCTTTGCAAGC  1134

seq1  ATGCAGTGAATTC  1160
      |||||||||||||
seq2  ATGCAGTGAATTC  1147