BAC Information

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BAC

Clone NameB6Ng01-107F04
Chromosome8 (Build37)
Map Location 23,352,944 - 23,525,487
singlet/doubletdoublet
Overlap geneThsd1, Tpte, Slc25a15, LOC547006, Mrps31
Upstream geneLOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2
Downstream geneAI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107F04.bB6Ng01-107F04.g
ACCDH914821DH914822
length1,1691,078
definitionDH914821|Mus musculus domesticus DNA, BAC clone: B6Ng01-107F04, 5' end.DH914822|Mus musculus domesticus DNA, BAC clone: B6Ng01-107F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,352,944 - 23,354,126)(23,524,398 - 23,525,487)
sequence
gaattccctagtcatccaggtagagagcactggttctgttactggtaaaa
ttttttgaatgcttatcttgaatgttggacaacaattactttgaagagaa
gttaagtatcttacattttaaatcatctagagcagtttaaatagagccat
ttagatcaaacattctctaactgttgtctattttcccaaatacctaaaca
ccagaaaatggctaaagtaagacatgtgagggactaaggattgtcaatta
ttcttttatcttcactgtcacagttagaagtgactgctgtgaattcagag
tacttatcactactcaccattttaagcgtgagggtgaggagaaaccagaa
cgcttagaaagaaacaaatcaggtgtttgacctcttaggggttgtgtgtt
gttctgaaacatccttggcttggttgcacattctctgttgtccgaaaaaa
gctatttttattgtatcactaataatcctgctcaaatgcatcctttaaaa
tccaattctatccatttcctttcagtcctcggagaagccgaatacctcct
cctccaagagccagtccatgtggcactgagcgacagaacggtgtcagtgg
gtttccactacctcagtgacgtcaacgggacactgaggaatgtgtctgtc
atgctgtgggaggccaacaccaatcggactcttaccactaagtacctcct
gaccaaccaggcccaaggaacactccagtttgaatgtttctacttcaaag
aggctggtgactactggtttgtaatgatcccggaagtgacagacaatggc
acgcaagttccactctgggagaaaagtgcctttctgaaggtagaatggcc
tgtctttcacattgatttaaataggacagccaaggcagcagaaggcacct
ttcaagtgggtgtttttaccacccaaccgctctgcctgtttcccgtggac
aagccagacatgctggtggatgttattttcactgaccgtcttccggagca
gagcagtttgggacagccgctgagatcagagccagcaaagacaaaactca
cctcagtcagtgggtcgagtttgctgtgcaccggtaagggtgagcttacg
ttacagtcatgctgagctgttggtcagactcagctatgctttctacggga
cctattgacctgctcaaaa
gaattcatttacctcttctttggagggtcttccggagctttctgaagcct
gtcaacggtagcctccagactggcagaaggttttctgccacgtggctttg
gtgttttcacatttgctgtgctcaggtcaactttcatgtccttaataatg
tccagcaggtcttttttcaaagtctcctttcccctgccttggctctctgc
tgccttctgggaaatttcattggctggaacagactggtcaactttcttgc
tacagattgatctgctagtgcaaaaatgtctttggatattattttctgtc
ctgaaatgacacattaaggaagaacagaaaaatataattcaaaaataata
aagtagtaacggaaaaacctgcttctacatgtaaaaggatttcatgtaaa
ccctctccatttccttttgtttcccactattattaacaaccataatggaa
gccattcatcaggtattagcacatactttggacctcgtttggacaatcgt
tgtgtgcaatttttcacacccatgtcaactccaaaggtcagcattatcct
ccccttacagataaggaaacagaaaaccacaggagtaaccatgccgggtg
tagagactttcctggggctaagataaaacaccaagactaaaagcaataaa
tggaaggaggaagtgatttgtacttaagatttcagagggagaacagccat
cagacaaaaagaagcaggcttgccagcatgtgcagaaaactgagcaatgg
catcctcaaatgcaggacaaggcggagagagcaaactggaagtggcacag
gtctttaatctctctaagcccaccccagtgacatactcctccccaaacag
tgcagcaactgggaccaagtcttcaaatatttgggcctcagaaggcgatt
ctcattctaaaccactatactccaccctcgggccctgcaggctcatgacc
gtatcacaatgcaaagtatattcagtccattttaaagttcccttagtctt
cactcagtgttcacattgtttaagtcaaagtctctctgagatctttggtg
agatgggactctttgagaattttgtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23352944_23354126
seq2: B6Ng01-107F04.b_45_1213

seq1  GAATTCCCTAGTCATCCAGGTAGAGAGCACTGGTTCTGTTACTGGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGTCATCCAGGTAGAGAGCACTGGTTCTGTTACTGGTAAAA  50

seq1  TTTTTTGAATGCTTATCTTGAATGTTGGACAACAATTACTTTGAAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAATGCTTATCTTGAATGTTGGACAACAATTACTTTGAAGAGAA  100

seq1  GTTAAGTATCTTACATTTTAAATCATCTAGAGCAGTTTAAATAGAGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTATCTTACATTTTAAATCATCTAGAGCAGTTTAAATAGAGCCAT  150

seq1  TTAGATCAAACATTCTCTAACTGTTGTCTATTTTCCCAAATACCTAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCAAACATTCTCTAACTGTTGTCTATTTTCCCAAATACCTAAACA  200

seq1  CCAGAAAATGGCTAAAGTAAGACATGTGAGGGACTAAGGATTGTCAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAATGGCTAAAGTAAGACATGTGAGGGACTAAGGATTGTCAATTA  250

seq1  TTCTTTTATCTTCACTGTCACAGTTAGAAGTGACTGCTGTGAATTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATCTTCACTGTCACAGTTAGAAGTGACTGCTGTGAATTCAGAG  300

seq1  TACTTATCACTACTCACCATTTTAAGCGTGAGGGTGAGGAGAAACCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATCACTACTCACCATTTTAAGCGTGAGGGTGAGGAGAAACCAGAA  350

seq1  CGCTTAGAAAGAAACAAATCAGGTGTTTGACCTCTTAGGGGTTGTGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTAGAAAGAAACAAATCAGGTGTTTGACCTCTTAGGGGTTGTGTGTT  400

seq1  GTTCTGAAACATCCTTGGCTTGGTTGCACATTCTCTGTTGTCCGAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAAACATCCTTGGCTTGGTTGCACATTCTCTGTTGTCCGAAAAAA  450

seq1  GCTATTTTTATTGTATCACTAATAATCCTGCTCAAATGCATCCTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTTATTGTATCACTAATAATCCTGCTCAAATGCATCCTTTAAAA  500

seq1  TCCAATTCTATCCATTTCCTTTCAGTCCTCGGAGAAGCCGAATACCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCTATCCATTTCCTTTCAGTCCTCGGAGAAGCCGAATACCTCCT  550

seq1  CCTCCAAGAGCCAGTCCATGTGGCACTGAGCGACAGAACGGTGTCAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGAGCCAGTCCATGTGGCACTGAGCGACAGAACGGTGTCAGTGG  600

seq1  GTTTCCACTACCTCAGTGACGTCAACGGGACACTGAGGAATGTGTCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCACTACCTCAGTGACGTCAACGGGACACTGAGGAATGTGTCTGTC  650

seq1  ATGCTGTGGGAGGCCAACACCAATCGGACTCTTACCACTAAGTACCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGGGAGGCCAACACCAATCGGACTCTTACCACTAAGTACCTCCT  700

seq1  GACCAACCAGGCCCAAGGAACACTCCAGTTTGAATGTTTCTACTTCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACCAGGCCCAAGGAACACTCCAGTTTGAATGTTTCTACTTCAAAG  750

seq1  AGGCTGGTGACTACTGGTTTGTAATGATCCCGGAAGTGACAGACAATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGTGACTACTGGTTTGTAATGATCCCGGAAGTGACAGACAATGGC  800

seq1  ACGCAAGTTCCACTCTGGGAGAAAAGTGCCTTTCTGAAGGTAGAATGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAGTTCCACTCTGGGAGAAAAGTGCCTTTCTGAAGGTAGAATGGCC  850

seq1  TGTCTTTCACATTGATTTAAATAGGACAGCCAAGGCAGCAGAAGGCACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCACATTGATTTAAATAGGACAGCCAAGGCAGCAGAAGGCACCT  900

seq1  TTCAAGTGGGTGTTTTTACCACCCAACCGCTCTGCCTGTTTCCCGTGGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGGGTGTTTTTACCACCCAACCGCTCTGCCTGTTTCCCGTGGAC  950

seq1  AAGCCAGACATGCTGGTGGATGTTATTTTCACTGACCGTCTTCCGGAGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AAGCCAGACATGCTGGTGGATGTTATTTTCACTGACCGTCTTCCGGAG--  998

seq1  AAGAGCAAGTTTGGGACAGCCGCTGGAGATCAGAGCCAGCAAAAGGACAA  1050
       ||||| ||||||||||||||||| ||||||||||||||||||  |||||
seq2  CAGAGC-AGTTTGGGACAGCCGCT-GAGATCAGAGCCAGCAAA--GACAA  1044

seq1  AACTCA-CTCAAGGTCAGTGGGTCGAGTTTGGCTGTGCACCGGTAGGGGT  1099
      |||||| ||||  ||||||||||||||||| |||||||||||||| ||||
seq2  AACTCACCTCA--GTCAGTGGGTCGAGTTT-GCTGTGCACCGGTAAGGGT  1091

seq1  GGAAGCCTACGTTACAGTCATGCTGAGGCTGTTGGGTCAAGACTCAGTCA  1149
      |  ||| ||||||||||||||||||| |||||| |||| ||||||||  |
seq2  G--AGCTTACGTTACAGTCATGCTGA-GCTGTT-GGTC-AGACTCAGCTA  1136

seq1  TTGCTTCTACGGGACCTATTGACCTGGCTCAAAA  1183
      |   ||||||||||||||||||||| ||||||||
seq2  TGCTTTCTACGGGACCTATTGACCT-GCTCAAAA  1169

seq1: chr8_23524398_23525487
seq2: B6Ng01-107F04.g_67_1144 (reverse)

seq1  GTCACCAAATATTCTCAAAGAGTCTCAATCTTCACCAAAGATTCTCAGAG  50
      |||||  || |||||||||||||| | ||| |||||||||| ||||||||
seq2  GTCAC--AAAATTCTCAAAGAGTC-CCATC-TCACCAAAGA-TCTCAGAG  45

seq1  AGACTTTGGACTTTTAAACAATGTGGACACCTGAGTGAAAGACTAAGGGA  100
      ||||||| |||  |||||||||||| ||| ||||||| ||||||||||||
seq2  AGACTTT-GAC--TTAAACAATGTGAACA-CTGAGTG-AAGACTAAGGGA  90

seq1  ACTTTAAAAATTGGACTGAATATACTTTGCATTGTGATACGGTCATGAGC  150
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAA--TGGACTGAATATACTTTGCATTGTGATACGGTCATGAGC  138

seq1  CTGCAGGGCCCGAGGGTGGAGTATAGTGGTTTAGAATGAGAATCGCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGGCCCGAGGGTGGAGTATAGTGGTTTAGAATGAGAATCGCCTTC  188

seq1  TGAGGCCCAAATATTTGAAGACTTGGTCCCAGTTGCTGCACTGTTTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCCAAATATTTGAAGACTTGGTCCCAGTTGCTGCACTGTTTGGGG  238

seq1  AGGAGTATGTCACTGGGGTGGGCTTAGAGAGATTAAAGACCTGTGCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTATGTCACTGGGGTGGGCTTAGAGAGATTAAAGACCTGTGCCACT  288

seq1  TCCAGTTTGCTCTCTCCGCCTTGTCCTGCATTTGAGGATGCCATTGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTGCTCTCTCCGCCTTGTCCTGCATTTGAGGATGCCATTGCTCA  338

seq1  GTTTTCTGCACCTGCTGGCAAGCCTGCTTCTTTTTGTCTGATGGCTGTTC  400
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGCACATGCTGGCAAGCCTGCTTCTTTTTGTCTGATGGCTGTTC  388

seq1  TCCCTCTGAAATCTTAAGTACAAATCACTTCCTCCTTCCATTTATTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGAAATCTTAAGTACAAATCACTTCCTCCTTCCATTTATTGCTT  438

seq1  TTAGTCTTGGTGTTTTATCTTAGCCCCAGGAAAGTCTCTACACCCGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTGGTGTTTTATCTTAGCCCCAGGAAAGTCTCTACACCCGGCAT  488

seq1  GGTTACTCCTGTGGTTTTCTGTTTCCTTATCTGTAAGGGGAGGATAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTCCTGTGGTTTTCTGTTTCCTTATCTGTAAGGGGAGGATAATGC  538

seq1  TGACCTTTGGAGTTGACATGGGTGTGAAAAATTGCACACAACGATTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTGGAGTTGACATGGGTGTGAAAAATTGCACACAACGATTGTCC  588

seq1  AAACGAGGTCCAAAGTATGTGCTAATACCTGATGAATGGCTTCCATTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGGTCCAAAGTATGTGCTAATACCTGATGAATGGCTTCCATTATG  638

seq1  GTTGTTAATAATAGTGGGAAACAAAAGGAAATGGAGAGGGTTTACATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAATAATAGTGGGAAACAAAAGGAAATGGAGAGGGTTTACATGAA  688

seq1  ATCCTTTTACATGTAGAAGCAGGTTTTTCCGTTACTACTTTATTATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTACATGTAGAAGCAGGTTTTTCCGTTACTACTTTATTATTTTT  738

seq1  GAATTATATTTTTCTGTTCTTCCTTAATGTGTCATTTCAGGACAGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATATTTTTCTGTTCTTCCTTAATGTGTCATTTCAGGACAGAAAAT  788

seq1  AATATCCAAAGACATTTTTGCACTAGCAGATCAATCTGTAGCAAGAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCAAAGACATTTTTGCACTAGCAGATCAATCTGTAGCAAGAAAGT  838

seq1  TGACCAGTCTGTTCCAGCCAATGAAATTTCCCAGAAGGCAGCAGAGAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGTCTGTTCCAGCCAATGAAATTTCCCAGAAGGCAGCAGAGAGCC  888

seq1  AAGGCAGGGGAAAGGAGACTTTGAAAAAAGACCTGCTGGACATTATTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGGGAAAGGAGACTTTGAAAAAAGACCTGCTGGACATTATTAAG  938

seq1  GACATGAAAGTTGACCTGAGCACAGCAAATGTGAAAACACCAAAGCCACG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAAAGTTGACCTGAGCACAGCAAATGTGAAAACACCAAAGCCACG  988

seq1  TGGCAGAAAACCTTCTGCCAGTCTGGAGGCTACCGTTGACAGGCTTCAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAAAACCTTCTGCCAGTCTGGAGGCTACCGTTGACAGGCTTCAGA  1038

seq1  AAGCTCCGGAAGACCCTCCAAAGAAGAGGTAAATGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCGGAAGACCCTCCAAAGAAGAGGTAAATGAATTC  1078