BAC Information

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BAC

Clone NameB6Ng01-107K09
Chromosome8 (Build37)3 (Build37)
Map Location 112,775,899 - 112,776,35054,231,069 - 54,231,111
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546
Downstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107K09.bB6Ng01-107K09.g
ACCDH915054DH915055
length460402
definitionDH915054|Mus musculus domesticus DNA, BAC clone: B6Ng01-107K09, 5' end.DH915055|Mus musculus domesticus DNA, BAC clone: B6Ng01-107K09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(112,775,899 - 112,776,350)(54,231,069 - 54,231,111)
sequence
tatagaatcattaattcatctaaacagcatcaattcatgaaagttcattt
ttctgttgataagtaagaaatcagatcaataaggtaggttaatgcccagg
gattattatattaatttaataatgacaggaaaggcatatcacctgcaaga
agcaatcctgagatgaagtctcttcgggaccttgcagcgagctcacccat
cacagaccatgaaaaaatgatgggccacctccaggaaggctacctgctat
cctagatagcatagcctatcctagacaacatcagaataagcagctattta
aatagcaatatcttcaaatttatgttgtatcccagtctcaatcaatggca
ataaatcttacttgcttttccttccttccttccttccttccttccttcct
tccttccttccttcctcccttcccttcccttcccttaccttcccttactg
ggttggttgg
ttggccctaaatggtgtgtctatgtcatattgcctccttatcccaaggct
gcagaagaaaggacagaaagattgtaaggccagaggtggcagatggctac
aatgagactcagcagggcagttgcacatataaattaacagttatggcagc
acatacaaggcttgcactagctggtgccagacaatccagggtttggagag
gtggggagtcctagataaggatctactggcaactggttgctgcttgggaa
ggagagtcagtctagattaggggtatggcccctagtagaactaacacaca
ccggtaggcgacaacacatgcctgagcacaccggtagcacaaactatgga
tgatggtttttgttttaagaggacacaaagttgggtgggtagggaagagg
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112775899_112776350
seq2: B6Ng01-107K09.b_43_494

seq1  GAATTCTATAGAATCATTAATTCATCTAAACAGCATCAATTCATGAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGAATCATTAATTCATCTAAACAGCATCAATTCATGAAAGT  50

seq1  TCATTTTTCTGTTGATAAGTAAGAAATCAGATCAATAAGGTAGGTTAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTCTGTTGATAAGTAAGAAATCAGATCAATAAGGTAGGTTAATG  100

seq1  CCCAGGGATTATTATATTAATTTAATAATGACAGGAAAGGCATATCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGATTATTATATTAATTTAATAATGACAGGAAAGGCATATCACCT  150

seq1  GCAAGAAGCAATCCTGAGATGAAGTCTCTTCGGGACCTTGCAGCGAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGCAATCCTGAGATGAAGTCTCTTCGGGACCTTGCAGCGAGCTC  200

seq1  ACCCATCACAGACCATGAAAAAATGATGGGCCACCTCCAGGAAGGCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCACAGACCATGAAAAAATGATGGGCCACCTCCAGGAAGGCTACC  250

seq1  TGCTATCCTAGATAGCATAGCCTATCCTAGACAACATCAGAATAAGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCCTAGATAGCATAGCCTATCCTAGACAACATCAGAATAAGCAGC  300

seq1  TATTTAAATAGCAATATCTTCAAATTTATGTTGTATCCCAGTCTCAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAATAGCAATATCTTCAAATTTATGTTGTATCCCAGTCTCAATCA  350

seq1  ATGGCAATAAATCTTACTTGCTTTTCCTTCCTTCCTTCCTTCCTTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAATAAATCTTACTTGCTTTTCCTTCCTTCCTTCCTTCCTTCCTTC  400

seq1  CTTCCTTCCTTCCTTCCTTCCTCCCTTCCCTTCCCTTCCCTTCCCTTCCC  450
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTCCTTCCTTCCTTCCTTCCTCCCTTCCCTTCCCTTCCCTTACCTTCCC  450

seq1  TT  452
      ||
seq2  TT  452

seq1: chr3_54231069_54231111
seq2: B6Ng01-107K09.g_433_472 (reverse)

seq1  CTCCTCTTCCCTAACCACCCAACTTTGTGTCCTCATTTTAAAA  43
      ||||||||||||| ||||||||||||||||||||   ||||||
seq2  CTCCTCTTCCCTACCCACCCAACTTTGTGTCCTC---TTAAAA  40