BAC Information

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BAC

Clone NameB6Ng01-108A19
Chromosome8 (Build37)
Map Location 60,931,958 - 61,125,037
singlet/doubletdoublet
Overlap gene4930431L04Rik
Upstream geneScrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream geneBC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108A19.bB6Ng01-108A19.g
ACCDH915336DH915337
length1,1811,160
definitionDH915336|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A19, 5' end.DH915337|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,931,958 - 60,933,129)(61,123,867 - 61,125,037)
sequence
gaattctacagtgcttcagagaattttaaacaatcctttcttacagtggg
tttcctgattttcttctgattattatccctctcaaaccataagacctaac
aaaccctttgttctacaagttgttttggtaatttgtttcatcatagcaat
actaatatatccattgactctaattatcctgacagtctgtgtatggattt
agggctatctactggaacatggataatctatcatgagccatattcctagt
gaaaatggactctccctccccaagcagccacaaatatcaatagttccagt
cagtgctggtggtccatgagctcatgtcccatccatactggaaggaagcc
agtcaatgatcatgaaacctgtgaactcatctttatctggcaagtgaagc
acaacaaagccataatgacctcttgtgttcatgctcttactttttgagat
tatacaacatggcatcatttcttcctttccctttctctcatcagaccttc
ccatacaccttctttgttctctttcaaattcatggtctctttttcattgt
tattgcttgcatgtatatgtatgtgcatgcatatatgtcccaaaacacaa
cctgcccagtctaaataattctacctaaatgtgtgttttcaggcatcctg
attggacaagcaattgctgtgctctttcctggcggcgagtgttcctcctg
ctagtagcatgcctttgttgtctgtagctctttgtgtagattggaggcct
tgtatccccaccctgactcctctttgctgctgttcactttggcaagtatg
ttgttgtctttcttcagcttatgtttagacagtcaagcttgtgatagttt
atggtgttgcttctgacattactaggagaaacaatctcacagctagttcc
ctgacttgaccctctggcttatttccacttcctcttttgcagtattccct
gagttaaggaataggagttgtttagtgcatgtattccactggggcctctg
tttttagagctgccgtcactgtgccttttactaattatgtcttggataca
gtgagaaaaggtttctttttactgctgtcaattttctgtttgtttggttg
gatttggtagagagaaactatggttctttattgcttcacggaatgtaacc
tagcgcacagtaggaacttaacatgggagct
gaattcctatttgtccagcattagagcttcatatggtatcaatgaagttt
aattcagtatcattcacgttgctgctgaagcataaattgtgaggctgtag
gagaatgaacaatgaagcaatagtgtactgatgaccccacagcccttgct
tttctttgatttgtgcacagatgctctgtagccttgcaaagtgcatctac
tcatgggctgactctcattaaagtgacaatccactcatgacccaaattgt
ctgagaaatatctgtgatttcctagtcgtttctgacatataccacttcta
aagctgtcatctgcttctgaatgtatccatccttgaactcctactggcta
gagacccctgtccttcaggcaaatttcaacctacatctgcaattgtgaga
gattactgatcattactttaactctttgctccctgaaatataattttata
aaaccttagtattactgattccagtgtcaaaagagagtttaaatacacag
ggaatgcatcatgtaagctctataaggataggcaacaaaattaagtgaaa
ggtgctcatatagatacacaatttaatttgaaaattgttccccagttaca
atggtgttccaaagaagaataacagttctagctacaaagaaaattaaaag
ctgaatacagaaaaattcaagagtgaaactatttatataatttaattctg
atccacggttttgactaatgaaacaagtatagtctcttggttagttttac
aaaaaatgattttaaaaaggaaaacatgtgcaaaattttaaaaatgatat
attggtatgatttgctgtaccaagctaagtattatattacttaaaataag
tatgtagatttatataattatattgccctgagaactgtgttctttatact
attctactttaatgtagtgtgtgtgtgtgtgtaaaatactcatatcactt
atatattaataaatcacttctattagtatatggccacaaaaccattattc
agataactagtaaagattcaggaattacccttctaatcctatataaaatt
taggagccacaaagaaaatcatgcgaaaaaaatttacattattgtagtct
tccccctccttaaattttaatgttttttctttaacaacttctgtgtagac
ctattttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_60931958_60933129
seq2: B6Ng01-108A19.b_43_1223

seq1  GAATTCTACAGTGCTTCAGAGAATTTTAAACAATCCTTTCTTACAGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGTGCTTCAGAGAATTTTAAACAATCCTTTCTTACAGTGGG  50

seq1  TTTCCTGATTTTCTTCTGATTATTATCCCTCTCAAACCATAAGACCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGATTTTCTTCTGATTATTATCCCTCTCAAACCATAAGACCTAAC  100

seq1  AAACCCTTTGTTCTACAAGTTGTTTTGGTAATTTGTTTCATCATAGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTTGTTCTACAAGTTGTTTTGGTAATTTGTTTCATCATAGCAAT  150

seq1  ACTAATATATCCATTGACTCTAATTATCCTGACAGTCTGTGTATGGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATATCCATTGACTCTAATTATCCTGACAGTCTGTGTATGGATTT  200

seq1  AGGGCTATCTACTGGAACATGGATAATCTATCATGAGCCATATTCCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTATCTACTGGAACATGGATAATCTATCATGAGCCATATTCCTAGT  250

seq1  GAAAATGGACTCTCCCTCCCCAAGCAGCCACAAATATCAATAGTTCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGACTCTCCCTCCCCAAGCAGCCACAAATATCAATAGTTCCAGT  300

seq1  CAGTGCTGGTGGTCCATGAGCTCATGTCCCATCCATACTGGAAGGAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGGTGGTCCATGAGCTCATGTCCCATCCATACTGGAAGGAAGCC  350

seq1  AGTCAATGATCATGAAACCTGTGAACTCATCTTTATCTGGCAAGTGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGATCATGAAACCTGTGAACTCATCTTTATCTGGCAAGTGAAGC  400

seq1  ACAACAAAGCCATAATGACCTCTTGTGTTCATGCTCTTACTTTTTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAGCCATAATGACCTCTTGTGTTCATGCTCTTACTTTTTGAGAT  450

seq1  TATACAACATGGCATCATTTCTTCCTTTCCCTTTCTCTCATCAGACCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAACATGGCATCATTTCTTCCTTTCCCTTTCTCTCATCAGACCTTC  500

seq1  CCATACACCTTCTTTGTTCTCTTTCAAATTCATGGTCTCTTTTTCATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACACCTTCTTTGTTCTCTTTCAAATTCATGGTCTCTTTTTCATTGT  550

seq1  TATTGCTTGCATGTATATGTATGTGCATGCATATATGTCCCAAAACACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTGCATGTATATGTATGTGCATGCATATATGTCCCAAAACACAA  600

seq1  CCTGCCCAGTCTAAATAATTCTACCTAAATGTGTGTTTTCAGGCATCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCAGTCTAAATAATTCTACCTAAATGTGTGTTTTCAGGCATCCTG  650

seq1  ATTGGACAAGCAATTGCTGTGCTCTTTCCTGGCGGCGAGTGTTCCTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACAAGCAATTGCTGTGCTCTTTCCTGGCGGCGAGTGTTCCTCCTG  700

seq1  CTAGTAGCATGCCTTTGTTGTCTGTAGCTCTTTGTGTAGATTGGAGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGCATGCCTTTGTTGTCTGTAGCTCTTTGTGTAGATTGGAGGCCT  750

seq1  TGTATCCCCACCCTGACTCCTCTTTGCTGCTGTTCACTTTGGCAAGTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCCACCCTGACTCCTCTTTGCTGCTGTTCACTTTGGCAAGTATG  800

seq1  TTGTTGTCTTTCTTCAGCTTATGTTTAGACAGTCAAGCTTGTGATAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCTTTCTTCAGCTTATGTTTAGACAGTCAAGCTTGTGATAGTTT  850

seq1  ATGGTGTTGCTTCTGACATTACTAGGAGAAACAATCTCACAGCTAGTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTTGCTTCTGACATTACTAGGAGAAACAATCTCACAGCTAGTTCC  900

seq1  CTGACTTGACCCTCTGGCTTATTTCCACTTCCTCTTTTGCAGTATTCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTGACCCTCTGGCTTATTTCCACTTCCTCTTTTGCAGTATTCCCT  950

seq1  GAGTTAAGGAATAGGAGTTGTTTAGTGCATGTATT-CACT-GGGCCTCTG  998
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  GAGTTAAGGAATAGGAGTTGTTTAGTGCATGTATTCCACTGGGGCCTCTG  1000

seq1  TTTTTAAGAGGCTGCCGTCACTGTGCCTTTTACT-ATTATGTCCTTGGAT  1047
      ||||| ||| |||||||||||||||||||||||| ||||||| |||||||
seq2  TTTTT-AGA-GCTGCCGTCACTGTGCCTTTTACTAATTATGT-CTTGGAT  1047

seq1  ACAGTGAG-ACAGGTTTC-TTTTACTGCTGTCAATATTCTGTTTGTTT-G  1094
      |||||||| | ||||||| |||||||||||||||| |||||||||||| |
seq2  ACAGTGAGAAAAGGTTTCTTTTTACTGCTGTCAATTTTCTGTTTGTTTGG  1097

seq1  TTTGATTTTGTAG-GAGACAC-ATGGTCCTT--ATGC-TCACAGATAGTA  1139
      || ||||| |||| |||| || ||||| |||   ||| |||| ||  |||
seq2  TTGGATTTGGTAGAGAGAAACTATGGTTCTTTATTGCTTCACGGAATGTA  1147

seq1  A-CTA--GCACAGTAGGGACTTTAAACATGGAAGCT  1172
      | |||  |||||||||| ||||  ||||||| ||||
seq2  ACCTAGCGCACAGTAGGAACTT--AACATGGGAGCT  1181

seq1: chr8_61123867_61125037
seq2: B6Ng01-108A19.g_63_1222 (reverse)

seq1  AAAAAAATAGGAGTTCCTACACAGATGTGTGTATAGAAAAAACATGTAAA  50
      |||||||||||     ||||||||| ||   || ||||||||||| ||||
seq2  AAAAAAATAGG----TCTACACAGAAGTTGTTAAAGAAAAAACAT-TAAA  45

seq1  AATTAAGGAAGTGGTAGACTACAATAATGTAATATTTTTTCTGCATTGAT  100
      | ||||||| | || ||||||||||||||||| |||||||  ||| ||| 
seq2  ATTTAAGGAGGGGGAAGACTACAATAATGTAA-ATTTTTTTCGCA-TGA-  92

seq1  TTTTCTTTTGTGCTCCTAAATTATATATTAGGATTAGAA-GGTAATTCTT  149
      ||||||||   ||||||||||| |||| ||||||||||| |||||||| |
seq2  TTTTCTTTGTGGCTCCTAAATTTTATA-TAGGATTAGAAGGGTAATTCCT  141

seq1  GAATCTTTTACTAGTTTATCTGAATAATGGTTTTTGTGGCCATATACTAA  199
      ||||| |||||||| ||||||||||||||| |||||||||||||||||||
seq2  GAATC-TTTACTAG-TTATCTGAATAATGG-TTTTGTGGCCATATACTAA  188

seq1  TAGAAGTGATTTATTAATATATAAGTGATATGAGTATTTTACACACACAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGATTTATTAATATATAAGTGATATGAGTATTTTACACACACAC  238

seq1  ACACACTACATTAAAGTAGAATAGTATAAAGAACACAGTTCTCAGGGCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTACATTAAAGTAGAATAGTATAAAGAACACAGTTCTCAGGGCAA  288

seq1  TATAATTATATAAATCTACATACTTATTTTAAGTAATATAATACTTAGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTATATAAATCTACATACTTATTTTAAGTAATATAATACTTAGCT  338

seq1  TGGTACAGCAAATCATACCAATATATCATTTTTAAAATTTTGCACATGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGCAAATCATACCAATATATCATTTTTAAAATTTTGCACATGTT  388

seq1  TTCCTTTTTAAAATCATTTTTTGTAAAACTAACCAAGAGACTATACTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTAAAATCATTTTTTGTAAAACTAACCAAGAGACTATACTTGT  438

seq1  TTCATTAGTCAAAACCGTGGATCAGAATTAAATTATATAAATAGTTTCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGTCAAAACCGTGGATCAGAATTAAATTATATAAATAGTTTCAC  488

seq1  TCTTGAATTTTTCTGTATTCAGCTTTTAATTTTCTTTGTAGCTAGAACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATTTTTCTGTATTCAGCTTTTAATTTTCTTTGTAGCTAGAACTG  538

seq1  TTATTCTTCTTTGGAACACCATTGTAACTGGGGAACAATTTTCAAATTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTCTTTGGAACACCATTGTAACTGGGGAACAATTTTCAAATTAA  588

seq1  ATTGTGTATCTATATGAGCACCTTTCACTTAATTTTGTTGCCTATCCTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTATCTATATGAGCACCTTTCACTTAATTTTGTTGCCTATCCTTA  638

seq1  TAGAGCTTACATGATGCATTCCCTGTGTATTTAAACTCTCTTTTGACACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTTACATGATGCATTCCCTGTGTATTTAAACTCTCTTTTGACACT  688

seq1  GGAATCAGTAATACTAAGGTTTTATAAAATTATATTTCAGGGAGCAAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAGTAATACTAAGGTTTTATAAAATTATATTTCAGGGAGCAAAGA  738

seq1  GTTAAAGTAATGATCAGTAATCTCTCACAATTGCAGATGTAGGTTGAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGTAATGATCAGTAATCTCTCACAATTGCAGATGTAGGTTGAAAT  788

seq1  TTGCCTGAAGGACAGGGGTCTCTAGCCAGTAGGAGTTCAAGGATGGATAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGAAGGACAGGGGTCTCTAGCCAGTAGGAGTTCAAGGATGGATAC  838

seq1  ATTCAGAAGCAGATGACAGCTTTAGAAGTGGTATATGTCAGAAACGACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAGCAGATGACAGCTTTAGAAGTGGTATATGTCAGAAACGACTA  888

seq1  GGAAATCACAGATATTTCTCAGACAATTTGGGTCATGAGTGGATTGTCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCACAGATATTTCTCAGACAATTTGGGTCATGAGTGGATTGTCAC  938

seq1  TTTAATGAGAGTCAGCCCATGAGTAGATGCACTTTGCAAGGCTACAGAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGAGAGTCAGCCCATGAGTAGATGCACTTTGCAAGGCTACAGAGC  988

seq1  ATCTGTGCACAAATCAAAGAAAAGCAAGGGCTGTGGGGTCATCAGTACAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCACAAATCAAAGAAAAGCAAGGGCTGTGGGGTCATCAGTACAC  1038

seq1  TATTGCTTCATTGTTCATTCTCCTACAGCCTCACAATTTATGCTTCAGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTCATTGTTCATTCTCCTACAGCCTCACAATTTATGCTTCAGCA  1088

seq1  GCAACGTGAATGATACTGAATTAAACTTCATTGATACCATATGAAGCTCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGTGAATGATACTGAATTAAACTTCATTGATACCATATGAAGCTCT  1138

seq1  AATGCTGGACAAATAGGAATTC  1171
      ||||||||||||||||||||||
seq2  AATGCTGGACAAATAGGAATTC  1160