BAC Information

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BAC

Clone NameB6Ng01-108C03
Chromosome8 (Build37)
Map Location 89,571,980 - 89,701,765
singlet/doubletdoublet
Overlap geneEG625298, EG330819
Upstream genePhkb, LOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960
Downstream geneCbln1, LOC100040294, 4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108C03.bB6Ng01-108C03.g
ACCDH915397DH915398
length1,0931,093
definitionDH915397|Mus musculus domesticus DNA, BAC clone: B6Ng01-108C03, 5' end.DH915398|Mus musculus domesticus DNA, BAC clone: B6Ng01-108C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,700,635 - 89,701,765)(89,571,980 - 89,573,075)
sequence
gaattcctgagaaacagccagactagtacctggcaacggaacgctgaaaa
aacatcaactactataaaacccatgaggaatgcatgctcctacaggccag
atgggttgcagaaaactttgatgcaggcactgaatattacaaggggaatt
tgggagctaatgtcatatgagagagtacgtggctgaccaatttatttgag
tgcaatttaaagagaaaagccactatgcaagtgaacacatccatgggcct
gccgatcgccttcaggagaaagctgggctacttggctcagtgaggactga
agctgtacttgcagcagatttacccttgcccagttgggtatggacagagt
ttgggggatggaaaaatgggatatgtcatagtgctgatagagctagggaa
gggacggtggctacgggcagtcttttgaggaagagtggaaccaggcagcc
catattttttataccttcttttgctgtattctcagcaaaggtgcagggaa
gccctgagccagctagccagccacatcacttttcctataaacacatacac
atgtttgcttatctgtcatctatctatctatctatctatctatctatcta
tctatctatctatctatctatctaactatctatctaactatctatctatc
tgtatcatctaactaccgaatgtctatcatagatctatcatctatctact
atctatctaccatctatccacctattatctgtctattatctagctccgct
tctgtaaatatcataaagggacctaaatcaaagtagaatgatttttagct
ttcataaactccttgaatcccagtgaaggaaaagaccccaggcaccgtca
gtcatcatctctttcttcttctcttcttcttctcttctcttcttcttctt
cttcttctctctctctctcttctcttccctctctctcctctcctctcctc
tcctctcctctctctcctctcttctcttctctctctcttctctctctctc
ctcctcctcttcaagaagcttccatattccactcatccagaacaatctgc
actaaatgagcatgttctattctgtaccacccagtgtcagcag
gaattcaccgattggctcgatactataagactaagcgggtgctcccaccc
aattggaaatatgagtcgtccacagcctctgctctagtggcataaatgct
gttgtgtgcacaagcaataaaatcactttgagtaaaaaaaaaaaaaaaaa
atctcagacactaaagaggagccatgggccgaagactcaccagctcagac
gttcactaagtctaagcagggaaggtgtgtggtgaagtgtgctaagcaga
gatgtgggaagtggcaaaggaaaaccaccccaaagagaacaccaatcctt
agctcttccctgatctcatggaggaaagagacctcagatcaacatgtctt
ctggtttttcaggagaagctagaaacctggactttcagaacacatacatt
tcttaagcagtcgacagtcaatccaaatgagtatttccaaaacacgggga
ggggagacacacatgtgacattttcactgagttggcctggtcatctctag
agtaggagagatttagtgcaaaggagaggatgagaaacacagcttggtca
acaaaggagaggtccaaccatgccagagctgtagagagaggaaacagccc
atcagctctgcagaggaaggcctggtgtcttataagacattttgcaacaa
gattgcacaatcagtgatgaaatggaagtgtcttagctccttttccgtgg
ctgtgagaaaacaccatgactgaagcaagtcatagaagagtttattgggg
ttcatagtttcagagggtgagttcatgacatcatggtggggagtgaggaa
ggaagtcaggcaagcatgccattgcagtagtagttgggaacttatgtatt
gatctacaagcatggaggcagagtgataactaggaacagcatgggcttct
gaaacctcaaaatatatcccagtgacatgccttttcaagggagaccacac
tcctaatccttcccaaacagttctaccaactaaggactaagtattcagca
tatggagctttatggggcattctcattcaaattttcacaggaggaaggga
ttctgggtcaatcttagctttgatttaagaattccatacttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_89700635_89701765
seq2: B6Ng01-108C03.b_42_1134 (reverse)

seq1  CTGCTG-CACTGGGTGGTAACAAGAAT-GAACATGCTCATGTAGTGCAGA  48
      |||||| ||||||||||||   ||||| |||||||||||| |||||||||
seq2  CTGCTGACACTGGGTGGTA--CAGAATAGAACATGCTCATTTAGTGCAGA  48

seq1  TTTGTCTGGGATGAAGTGGAATATGGGAAAGCTTCTTGGAAAGAGGAGGA  98
      ||  ||| ||||| ||||||||||||  ||||||||||  ||||||||||
seq2  TTGTTCT-GGATG-AGTGGAATATGG--AAGCTTCTTG--AAGAGGAGGA  92

seq1  GGAG-GAGGAAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAG  147
      |||| |||  ||||||||   |||||       ||||||      |||||
seq2  GGAGAGAGAGAGAAGAGAGAGAGAAG-------AGAAGA-----GAGGAG  130

seq1  AAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAA  197
      |  ||| ||||| ||||| ||||| ||||| ||||||  |||| |||  |
seq2  A--GAG-AGGAG-AGGAG-AGGAG-AGGAG-AGGAGA--GAGAGGGAAGA  171

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  247
      |||||   |||   ||||||||||||||||||||          ||||| 
seq2  GAAGAGAGAGAGAGAGAAGAAGAAGAAGAAGAAG----------AGAAG-  210

seq1  AGAAGAAGAAGAAGAAGAAGAAAGAGATGATGACTGACGGTGCCTGGGGT  297
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAG-AGAAGAAGAAAGAGATGATGACTGACGGTGCCTGGGGT  259

seq1  CTTTTCCTTCACTGGGATTCAAGGAGTTTATGAAAGCTAAAAATCATTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTCACTGGGATTCAAGGAGTTTATGAAAGCTAAAAATCATTCT  309

seq1  ACTTTGATTTAGGTCCCTTTATGATATTTACAGAAGCGGAGCTAGATAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGATTTAGGTCCCTTTATGATATTTACAGAAGCGGAGCTAGATAAT  359

seq1  AGACAGATAATAGGTGGATAGATGGTAGATAGATAGTAGATAGATGATAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATAATAGGTGGATAGATGGTAGATAGATAGTAGATAGATGATAG  409

seq1  ATCTATGATAGACATTCGGTAGTTAGATGATACAGATAGATAGATAGTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGATAGACATTCGGTAGTTAGATGATACAGATAGATAGATAGTTA  459

seq1  GATAGATAGTTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGTTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  509

seq1  TAGATAGATAGATAGATGACAGATAAGCAAACATGTGTATGTGTTTATAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATGACAGATAAGCAAACATGTGTATGTGTTTATAG  559

seq1  GAAAAGTGATGTGGCTGGCTAGCTGGCTCAGGGCTTCCCTGCACCTTTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGATGTGGCTGGCTAGCTGGCTCAGGGCTTCCCTGCACCTTTGC  609

seq1  TGAGAATACAGCAAAAGAAGGTATAAAAAATATGGGCTGCCTGGTTCCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATACAGCAAAAGAAGGTATAAAAAATATGGGCTGCCTGGTTCCAC  659

seq1  TCTTCCTCAAAAGACTGCCCGTAGCCACCGTCCCTTCCCTAGCTCTATCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCAAAAGACTGCCCGTAGCCACCGTCCCTTCCCTAGCTCTATCA  709

seq1  GCACTATGACATATCCCATTTTTCCATCCCCCAAACTCTGTCCATACCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATGACATATCCCATTTTTCCATCCCCCAAACTCTGTCCATACCCA  759

seq1  ACTGGGCAAGGGTAAATCTGCTGCAAGTACAGCTTCAGTCCTCACTGAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCAAGGGTAAATCTGCTGCAAGTACAGCTTCAGTCCTCACTGAGC  809

seq1  CAAGTAGCCCAGCTTTCTCCTGAAGGCGATCGGCAGGCCCATGGATGTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGCCCAGCTTTCTCCTGAAGGCGATCGGCAGGCCCATGGATGTGT  859

seq1  TCACTTGCATAGTGGCTTTTCTCTTTAAATTGCACTCAAATAAATTGGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGCATAGTGGCTTTTCTCTTTAAATTGCACTCAAATAAATTGGTC  909

seq1  AGCCACGTACTCTCTCATATGACATTAGCTCCCAAATTCCCCTTGTAATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACGTACTCTCTCATATGACATTAGCTCCCAAATTCCCCTTGTAATA  959

seq1  TTCAGTGCCTGCATCAAAGTTTTCTGCAACCCATCTGGCCTGTAGGAGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCCTGCATCAAAGTTTTCTGCAACCCATCTGGCCTGTAGGAGCA  1009

seq1  TGCATTCCTCATGGGTTTTATAGTAGTTGATGTTTTTTCAGCGTTCCGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCTCATGGGTTTTATAGTAGTTGATGTTTTTTCAGCGTTCCGTT  1059

seq1  GCCAGGTACTAGTCTGGCTGTTTCTCAGGAATTC  1131
      ||||||||||||||||||||||||||||||||||
seq2  GCCAGGTACTAGTCTGGCTGTTTCTCAGGAATTC  1093

seq1: chr8_89571980_89573075
seq2: B6Ng01-108C03.g_68_1160

seq1  GAATTCACCGATTGGCTCGATACTATAAGACTAAGCGGGTGCTCCCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGATTGGCTCGATACTATAAGACTAAGCGGGTGCTCCCACCC  50

seq1  AATTGGAAATATGAGTCGTCCACAGCCTCTGCTCTAGTGGCATAAATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAAATATGAGTCGTCCACAGCCTCTGCTCTAGTGGCATAAATGCT  100

seq1  GTTGTGTGCACAAGCAATAAAATCACTTTGAGTAAAAAAAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGCACAAGCAATAAAATCACTTTGAGTAAAAAAAAAAAAAAAAA  150

seq1  ATCTCAGACACTAAAGAGGAGCCATGGGCCGAAGACTCACCAGCTCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGACACTAAAGAGGAGCCATGGGCCGAAGACTCACCAGCTCAGAC  200

seq1  GTTCACTAAGTCTAAGCAGGGAAGGTGTGTGGTGAAGTGTGCTAAGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTAAGTCTAAGCAGGGAAGGTGTGTGGTGAAGTGTGCTAAGCAGA  250

seq1  GATGTGGGAAGTGGCAAAGGAAAACCACCCCAAAGAGAACACCAATCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGAAGTGGCAAAGGAAAACCACCCCAAAGAGAACACCAATCCTT  300

seq1  AGCTCTTCCCTGATCTCATGGAGGAAAGAGACCTCAGATCAACATGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCCCTGATCTCATGGAGGAAAGAGACCTCAGATCAACATGTCTT  350

seq1  CTGGTTTTTCAGGAGAAGCTAGAAACCTGGACTTTCAGAACACATACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTTCAGGAGAAGCTAGAAACCTGGACTTTCAGAACACATACATT  400

seq1  TCTTAAGCAGTCGACAGTCAATCCAAATGAGTATTTCCAAAACACGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCAGTCGACAGTCAATCCAAATGAGTATTTCCAAAACACGGGGA  450

seq1  GGGGAGACACACATGTGACATTTTCACTGAGTTGGCCTGGTCATCTCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGACACACATGTGACATTTTCACTGAGTTGGCCTGGTCATCTCTAG  500

seq1  AGTAGGAGAGATTTAGTGCAAAGGAGAGGATGAGAAACACAGCTTGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAGAGATTTAGTGCAAAGGAGAGGATGAGAAACACAGCTTGGTCA  550

seq1  ACAAAGGAGAGGTCCAACCATGCCAGAGCTGTAGAGAGAGGAAACAGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAGAGGTCCAACCATGCCAGAGCTGTAGAGAGAGGAAACAGCCC  600

seq1  ATCAGCTCTGCAGAGGAAGGCCTGGTGTCTTATAAGACATTTTGCAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTCTGCAGAGGAAGGCCTGGTGTCTTATAAGACATTTTGCAACAA  650

seq1  GATTGCACAATCAGTGATGAAATGGAAGTGTCTTAGCTCCTTTTCCGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCACAATCAGTGATGAAATGGAAGTGTCTTAGCTCCTTTTCCGTGG  700

seq1  CTGTGAGAAAACACCATGACTGAAGCAAGTCATAGAAGAGTTTATTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGAAAACACCATGACTGAAGCAAGTCATAGAAGAGTTTATTGGGG  750

seq1  TTCATAGTTTCAGAGGGTGAGTTCATGACATCATGGTGGGGAGTGAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTTTCAGAGGGTGAGTTCATGACATCATGGTGGGGAGTGAGGAA  800

seq1  GGAAGTCAGGCAAGCATGCCATTGCAGTAGTAGTTGGGAACTTATGTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCAGGCAAGCATGCCATTGCAGTAGTAGTTGGGAACTTATGTATT  850

seq1  GATCTACAAGCAT-GAGGCAGAGTGATAACTAGGAACAGCATGGGCTTCT  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATCTACAAGCATGGAGGCAGAGTGATAACTAGGAACAGCATGGGCTTCT  900

seq1  GAAACCTCAAAATATATCCCCAGTGACATGCCTTTTCCAAGGAGACCACA  949
      ||||||||||||||||| ||||||||||||||||||| | ||||||||||
seq2  GAAACCTCAAAATATAT-CCCAGTGACATGCCTTTTCAAGGGAGACCACA  949

seq1  CCTCCTAATCCTTCCCAAACAGTTCTACCAACTAAGGACTAAGTATTCAA  999
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  -CTCCTAATCCTTCCCAAACAGTTCTACCAACTAAGGACTAAGTATTC-A  997

seq1  GCATAT-GAGC-TTATGGGGCCATTCTCATTCAAATTATCACAGGAGGGA  1047
      |||||| |||| |||||||| |||||||||||||||| ||||||||||  
seq2  GCATATGGAGCTTTATGGGG-CATTCTCATTCAAATTTTCACAGGAGG--  1044

seq1  AGGGGATTCT-GGTCAATCTTAGC-TTGATTTTAGAAATTCCATTACTTC  1095
      | |||||||| ||||||||||||| ||||||| || ||||||| ||||||
seq2  AAGGGATTCTGGGTCAATCTTAGCTTTGATTTAAG-AATTCCA-TACTTC  1092

seq1  T  1096
      |
seq2  T  1093