BAC Information

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BAC

Clone NameB6Ng01-108D09
Chromosome8 (Build37)
Map Location 83,187,029 - 83,330,394
singlet/doubletdoublet
Overlap geneFrem3, Smarca5, Gab1, LOC666237
Upstream geneOtud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075, Gypa
Downstream geneLOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108D09.bB6Ng01-108D09.g
ACCDH915453DH915454
length9631,120
definitionDH915453|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D09, 5' end.DH915454|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,329,427 - 83,330,394)(83,187,029 - 83,188,167)
sequence
gaattctccctagcttctgtaagcaagtggagccgtggacaggttctgga
gttgctgtctaccaagacacaaacgagcaggaaacagcaagtgcctttac
aaggacgggacttgggggcttgctttattttgttttgtttgttgtttgtt
tgtttttgagacagggtttctctatgttcccttgactgttctggaacttc
ctctgtagaccagactcgtctccagttcacagagatccacctgtctctgc
cccccccccccaccagggccgccacctcagggctgagttgggggcttaag
tgaaggtcttgacctggaatttgaaggaagttgatcattggaagaggaat
gaagtgtgagagtgtggaggggaatgctcagaagacaacctggtttggaa
gatgcaaggtcatgtgccgtcctggaactgacacttggactgcactaact
tcctatctctgatttctttcccagagatcttctaatcaagttcactggct
ctctgtggtgattttgatgggcagaaaacactagattgtctatatcaagg
ctttcaagaccttagtaatttgttaattgttgttgctgattcaaaataat
tggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaa
aggggaaaggaaagaggaaaggaaagaggaaaggaaaggaaagaaaggcc
cctcgtgcttcgagttggagaagcagttccgaggcgtttggacccagtgc
agagtttggaggtcagctaccccacgtccaccgagcacagcacatgtata
cagcatgatgcagttgctgctctgaaggaatcacttccctcctgtaaaca
gaatcctctggttatttgtaaccacagaaggctcctagaacaagtgtatg
gcagagacgtggttttctttaaagctgacatacatcacttggggtaattg
ggcacgtctataa
gaattctttttattaaaatatacttttgaggaaaagcagaaaaaaaaaga
aattaacggacatgtattgagtatctaatttgtgaccaccgatttgtagt
attcttcccctaagcctttatgatattctctagaaaataaagagcctttc
ctctctacaaaaacagaacaatacataggtcctgatcattattcctttca
tcacttctgctcacgtcttctttatccctcacacttacaggaggaaagca
gctaagaaaccagcctttccatctaaactgggcttggatttctttggaaa
aagaatactacattgtggatgaagactccccattcttcgaagtgactctc
acccgcaggggataccttggaggcacatctgtcgttagtaagtaaggatt
ggctgtcagcaaaagggtatggagacatgaaatgtgggcttcagacagcc
gtgagagagcagactagaagagatggctggactgatggaatacctacaaa
agttacaggaaacctgtgttgtgtgcactacaggataagctacagctgat
atcctgtggttctctgtgtggtttccttgttctaatagattatattattt
tccttttctataattcaaaaaactccaggaaaattgagacatttcctagc
catcccacaatccccagctcaccaacttttttttctattgaaaatagatt
tttttttcctcacacaaaccataaatctcaaccagtttccactcctccca
gctccccacaaccatcccataccctcagatccactctccctccatttcct
cttcagaaaagagcagatctccaagagacaacaaccaaaaggacaaaaca
agatacaataagacaagcctaagtcctcacactgaggatgatgaggcaac
cctataagaggaaagagtctcaggacaagcaacagagtcagggacacatc
tgctcccactgtagaagtcccacaaaaacacccagctaacagccatggca
tatacacagaggactggtgtagacccatgcagggcctgtgctgctgctca
gtcttggggagctggctagtgatcagtgtgcatgatctttggttctcaat
ccctctgactccaaatcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_83329427_83330394
seq2: B6Ng01-108D09.b_47_1009 (reverse)

seq1  TTATAGAACGTGCCCAATTACCCCAAGTGATGCTATGTTCAGCTTTAAAG  50
      |||||| ||||||||||||||||||||||||| |||| ||||||||||||
seq2  TTATAG-ACGTGCCCAATTACCCCAAGTGATG-TATG-TCAGCTTTAAAG  47

seq1  AAAACCACTGTCTCTGCCATACACTTGTTCTAGGAGCCTTCTGTGGTTAC  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAC-GTCTCTGCCATACACTTGTTCTAGGAGCCTTCTGTGGTTAC  96

seq1  AAATAACCAGAGGATTCTGTTTTACAGGAGGGAAGTGATTCCTTCAGAGC  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAATAACCAGAGGATTCTG-TTTACAGGAGGGAAGTGATTCCTTCAGAGC  145

seq1  AGCAACTGCATCATGCTGTATACATGTGCTGTGCTCGGTGGACGTGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGCATCATGCTGTATACATGTGCTGTGCTCGGTGGACGTGGGGT  195

seq1  AGCTGACCTCCAAACTCTGCACTGGGTCCAAACGCCTCGGAACTGCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACCTCCAAACTCTGCACTGGGTCCAAACGCCTCGGAACTGCTTCT  245

seq1  CCAACTCGAAGCACGAGGGGCCTTTCTTTCCTTTCCTTTCCTCTTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCGAAGCACGAGGGGCCTTTCTTTCCTTTCCTTTCCTCTTTCCTT  295

seq1  TCCTCTTTCCTTTCCCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTCCTTTCCCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTT  345

seq1  CCTTTCCTTTCCTTTCCAATTATTTTGAATCAGCAACAACAATTAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTTCCTTTCCAATTATTTTGAATCAGCAACAACAATTAACAAA  395

seq1  TTACTAAGGTCTTGAAAGCCTTGATATAGACAATCTAGTGTTTTCTGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAGGTCTTGAAAGCCTTGATATAGACAATCTAGTGTTTTCTGCCC  445

seq1  ATCAAAATCACCACAGAGAGCCAGTGAACTTGATTAGAAGATCTCTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATCACCACAGAGAGCCAGTGAACTTGATTAGAAGATCTCTGGGA  495

seq1  AAGAAATCAGAGATAGGAAGTTAGTGCAGTCCAAGTGTCAGTTCCAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCAGAGATAGGAAGTTAGTGCAGTCCAAGTGTCAGTTCCAGGAC  545

seq1  GGCACATGACCTTGCATCTTCCAAACCAGGTTGTCTTCTGAGCATTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATGACCTTGCATCTTCCAAACCAGGTTGTCTTCTGAGCATTCCCC  595

seq1  TCCACACTCTCACACTTCATTCCTCTTCCAATGATCAACTTCCTTCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTCTCACACTTCATTCCTCTTCCAATGATCAACTTCCTTCAAAT  645

seq1  TCCAGGTCAAGACCTTCACTTAAGCCCCCAACTCAGCCCTGAGGTGGCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCAAGACCTTCACTTAAGCCCCCAACTCAGCCCTGAGGTGGCGG  695

seq1  CCCTGGTGGGGGGGGGGGGCAGAGACAGGTGGATCTCTGTGAACTGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTGGGGGGGGGGGGCAGAGACAGGTGGATCTCTGTGAACTGGAGA  745

seq1  CGAGTCTGGTCTACAGAGGAAGTTCCAGAACAGTCAAGGGAACATAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCTGGTCTACAGAGGAAGTTCCAGAACAGTCAAGGGAACATAGAGA  795

seq1  AACCCTGTCTCAAAAACAAACAAACAACAAACAAAACAAAATAAAGCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTCAAAAACAAACAAACAACAAACAAAACAAAATAAAGCAAG  845

seq1  CCCCCAAGTCCCGTCCTTGTAAAGGCACTTGCTGTTTCCTGCTCGTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAGTCCCGTCCTTGTAAAGGCACTTGCTGTTTCCTGCTCGTTTGT  895

seq1  GTCTTGGTAGACAGCAACTCCAGAACCTGTCCACGGCTCCACTTGCTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTAGACAGCAACTCCAGAACCTGTCCACGGCTCCACTTGCTTAC  945

seq1  AGAAGCTAGGGAGAATTC  968
      ||||||||||||||||||
seq2  AGAAGCTAGGGAGAATTC  963

seq1: chr8_83187029_83188167
seq2: B6Ng01-108D09.g_68_1187

seq1  GAATTCTTTTTATTAAAATATACTTTTGAGGAAAAGCAGAAAAAAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTATTAAAATATACTTTTGAGGAAAAGCAGAAAAAAAAAGA  50

seq1  AATTAACGGACATGTATTGAGTATCTAATTTGTGACCACCGATTTGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACGGACATGTATTGAGTATCTAATTTGTGACCACCGATTTGTAGT  100

seq1  ATTCTTCCCCTAAGCCTTTATGATATTCTCTAGAAAATAAAGAGCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCCCTAAGCCTTTATGATATTCTCTAGAAAATAAAGAGCCTTTC  150

seq1  CTCTCTACAAAAACAGAACAATACATAGGTCCTGATCATTATTCCTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTACAAAAACAGAACAATACATAGGTCCTGATCATTATTCCTTTCA  200

seq1  TCACTTCTGCTCACGTCTTCTTTATCCCTCACACTTACAGGAGGAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTGCTCACGTCTTCTTTATCCCTCACACTTACAGGAGGAAAGCA  250

seq1  GCTAAGAAACCAGCCTTTCCATCTAAACTGGGCTTGGATTTCTTTGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAAACCAGCCTTTCCATCTAAACTGGGCTTGGATTTCTTTGGAAA  300

seq1  AAGAATACTACATTGTGGATGAAGACTCCCCATTCTTCGAAGTGACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACTACATTGTGGATGAAGACTCCCCATTCTTCGAAGTGACTCTC  350

seq1  ACCCGCAGGGGATACCTTGGAGGCACATCTGTCGTTAGTAAGTAAGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCAGGGGATACCTTGGAGGCACATCTGTCGTTAGTAAGTAAGGATT  400

seq1  GGCTGTCAGCAAAAGGGTATGGAGACATGAAATGTGGGCTTCAGACAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCAGCAAAAGGGTATGGAGACATGAAATGTGGGCTTCAGACAGCC  450

seq1  GTGAGAGAGCAGACTAGAAGAGATGGCTGGACTGATGGAATACCTACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAGCAGACTAGAAGAGATGGCTGGACTGATGGAATACCTACAAA  500

seq1  AGTTACAGGAAACCTGTGTTGTGTGCACTACAGGATAAGCTACAGCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGGAAACCTGTGTTGTGTGCACTACAGGATAAGCTACAGCTGAT  550

seq1  ATCCTGTGGTTCTCTGTGTGGTTTCCTTGTTCTAATAGATTATATTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGGTTCTCTGTGTGGTTTCCTTGTTCTAATAGATTATATTATTT  600

seq1  TCCTTTTCTATAATTCAAAAAACTCCAGGAAAATTGAGACATTTCCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTATAATTCAAAAAACTCCAGGAAAATTGAGACATTTCCTAGC  650

seq1  CATCCCACAATCCCCAGCTCACCAACTTTTTTTTCTATTGAAAATAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCACAATCCCCAGCTCACCAACTTTTTTTTCTATTGAAAATAGATT  700

seq1  TTTTTTTCCTCACACAAACCATAAATCTCAACCAGTTTCCACTCCTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCTCACACAAACCATAAATCTCAACCAGTTTCCACTCCTCCCA  750

seq1  GCTCCCCACAACCATCCCATACCCTCAGATCCACTCTCCCTCCATTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCACAACCATCCCATACCCTCAGATCCACTCTCCCTCCATTTCCT  800

seq1  CTTCAGAAAAGAGCAGATCTCCAAGAGACAACAACCAAAAAGGACAAAAC  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTCAGAAAAGAGCAGATCTCCAAGAGACAACAACC-AAAAGGACAAAAC  849

seq1  AAGATACAATAAGACAAGCCTAAGTCCTCACACTGAGGATGAATGAGGCA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGATACAATAAGACAAGCCTAAGTCCTCACACTGAGGATG-ATGAGGCA  898

seq1  ACCCTATAAGAGGAAAAGAGTCTCAAGAACAAGCAACAGAGTCAGGGACA  950
      ||||||||||||| |||||||||| || ||||||||||||||||||||||
seq2  ACCCTATAAGAGG-AAAGAGTCTC-AGGACAAGCAACAGAGTCAGGGACA  946

seq1  CATCTGCTCCCACTGTTAGAAGTCCCACAAAAACACCCAGCTAACAGCCA  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATCTGCTCCCACTG-TAGAAGTCCCACAAAAACACCCAGCTAACAGCCA  995

seq1  TGGCATATACACAGAGAACCTGGTGTAGACCCATGCAGGCCCTGTGCTTG  1050
      |||||||||||||||| | |||||||||||||||||||| ||||||| ||
seq2  TGGCATATACACAGAGGA-CTGGTGTAGACCCATGCAGGGCCTGTGC-TG  1043

seq1  CTGCTTCAGTCTCTGTGAGCCTTGCTTAGTTGATTCAGTGTGCCATGATC  1100
      |||| |||||||  | ||||  ||  ||| ||| |||||||| |||||||
seq2  CTGC-TCAGTCTTGGGGAGC--TGGCTAG-TGA-TCAGTGTG-CATGATC  1087

seq1  TTCTGGTGTCCTCCATCCCCTCTGACTCCTACAATCATT  1139
      || ||  || ||| || ||||||||||||   |||||||
seq2  TT-TG--GTTCTCAAT-CCCTCTGACTCC--AAATCATT  1120