BAC Information

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BAC

Clone NameB6Ng01-108L16
Chromosome8 (Build37)
Map Location 77,810,488 - 77,811,701
singlet/doubletsinglet
Overlap geneLOC675507
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2
Downstream geneLOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036, LOC100039185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108L16.bB6Ng01-108L16.g
ACCDH915840DH915841
length1,1841,149
definitionDH915840|Mus musculus domesticus DNA, BAC clone: B6Ng01-108L16, 5' end.DH915841|Mus musculus domesticus DNA, BAC clone: B6Ng01-108L16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaggccagcctggtctacagaggggttccaggagagacagagct
ttatagtgagaccctgtctataaaacaaaaacaaaacaaaacccccaaaa
ccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccacaa
cagaaagctttagagaataatagttagaataataagaaacaaggtataaa
atatttgataaaattaaaattaaaaaatgttcccaaaagataaattatgc
tcttatgttttgtcattgaataaaaatctaaagttgctttaaagaggtat
acttgaacttggaaaagattgttttctggaacttacatgtcatccgccta
gaacagaaaaaaaatgtaaagaaacacctcacagtcttattctcagctga
aattttatttttgctttcagttcttatctatgtgctttagaaaataggct
ctggaccaattccctccaagatgcagatagagtgttcatggtaaaactcc
aggcatcttttgatgttttgttcctttctgctcccttcctagctttctca
attcttttattgcagtggcataaatatgctttacagggttcacagttccc
caaagtcatattagaatccaaataaaattgaaccaatacaaaagcagtaa
gatcctgaaacagtaatatatcatggcaaagctaaaaatgtttttctttt
gactattgagccctgagcccgtctacatcccagtgataaaggaagtagat
aaaataatggcttcaaagtctttgagagtgatttactggcagtaggaatt
ttagacattacccttataatgtaggctttcagaccttagaggagaaaaac
ctgacttagttgctgaatattcaggagagatttgttagatttaagagggt
ggcctgatagggagatgagcaagtagagtcacctcagaactgaccaaaga
ggcagaaaaaaagggaacaacatttggaagaaaaaggactctggttctga
agtaaatcatgtttctagagagacaggcccacatacaaacataccacgtg
agtcatggagacgtgcacgtggttcgtttgattgtctattctagtcttac
ttgagaaagttacttcccttcaggttacttcatgtgtatggtgagaagca
aatgccttttaaggacatgtagaccgagctgaga
gaattctcaatcgagtaatcttgaatggctgagacacttaaagaaatgtt
caacatccttagtcatgagggaaatgcaaatcaaaacaacagtgagattc
cacttcacaccactcagaatggctaagataaaaaaactcagttgacagca
gatgttggtgggatgtggagaaaaaggacactcctccattgttggtggga
ttgcaagctggtacaaccactctggaaatcagtctggtggttcctcagaa
agttggacatagtattacttgaggatccagccataccactcctgggcata
taatcaaaagatgctccaacatataacaaggatacatgctctattatgtt
catagcagccttatttataatagccagaagctggaaagaacccatatgtc
cttcaacagaggaatggatacaggaaatgtggtacatttatacaatgtgg
tactgctcagctactaaaaacaatgaattaatgaaattcttaggcaaatg
gatagaactagaaagtatcatcctgagtgaggtaacccagttgcaaaaga
acacacatggtatgcactcactaataactggatattagcccaaaaacttc
aagtagccagcaattaacagaccatatcaagctcaagaagaaggaagatt
aaagtgtgggtgctttggtccttcttagaaggagaacaaaatactcacag
gagcaaatatggagatgaagtgttgaacagagactgaaggaaaggccacc
cagagacgttcccacatggagatctatcccatatacagttatcaaaccca
aacagtattgtggatgacaagaagtgaatgctgaaaggagcctgatatgg
ctgtgtcctgagaggccctgccacagccttacaaatacagagacagatgc
ttgcaaccaaccattggactgagtgcaggtcctcaatagaggagttagag
aaggactgaaggagtagaggggtttgcacccataggagaacacatatcac
aaccagacacccagaactctaggactagcatcacaagagtagaatggctc
agctgctatgtagcaaggatggcttgtcatccacatagaagaaagtcctg
tcattgaggctcataatgctccatgtaagggcaattaatttgggagatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_77810488_77811701
seq2: B6Ng01-108L16.b_50_1233

seq1  GAATTCAAGGCCAGCCTGGTCTACAGAGGGGTTCCAGGAGAGACAGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGGTCTACAGAGGGGTTCCAGGAGAGACAGAGCT  50

seq1  TTATAGTGAGACCCTGTCTATAAAACAAAAACAAAACAAAACCCCCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTGAGACCCTGTCTATAAAACAAAAACAAAACAAAACCCCCAAAA  100

seq1  CCAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCACAA  150

seq1  CAGAAAGCTTTAGAGAATAATAGTTAGAATAATAAGAAACAAGGTATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCTTTAGAGAATAATAGTTAGAATAATAAGAAACAAGGTATAAA  200

seq1  ATATTTGATAAAATTAAAATTAAAAAATGTTCCCAAAAGATAAATTATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGATAAAATTAAAATTAAAAAATGTTCCCAAAAGATAAATTATGC  250

seq1  TCTTATGTTTTGTCATTGAATAAAAATCTAAAGTTGCTTTAAAGAGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTTTTGTCATTGAATAAAAATCTAAAGTTGCTTTAAAGAGGTAT  300

seq1  ACTTGAACTTGGAAAAGATTGTTTTCTGGAACTTACATGTCATCCGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAACTTGGAAAAGATTGTTTTCTGGAACTTACATGTCATCCGCCTA  350

seq1  GAACAGAAAAAAAATGTAAAGAAACACCTCACAGTCTTATTCTCAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAAAAAAATGTAAAGAAACACCTCACAGTCTTATTCTCAGCTGA  400

seq1  AATTTTATTTTTGCTTTCAGTTCTTATCTATGTGCTTTAGAAAATAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATTTTTGCTTTCAGTTCTTATCTATGTGCTTTAGAAAATAGGCT  450

seq1  CTGGACCAATTCCCTCCAAGATGCAGATAGAGTGTTCATGGTAAAACTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCAATTCCCTCCAAGATGCAGATAGAGTGTTCATGGTAAAACTCC  500

seq1  AGGCATCTTTTGATGTTTTGTTCCTTTCTGCTCCCTTCCTAGCTTTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCTTTTGATGTTTTGTTCCTTTCTGCTCCCTTCCTAGCTTTCTCA  550

seq1  ATTCTTTTATTGCAGTGGCATAAATATGCTTTACAGGGTTCACAGTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTATTGCAGTGGCATAAATATGCTTTACAGGGTTCACAGTTCCC  600

seq1  CAAAGTCATATTAGAATCCAAATAAAATTGAACCAATACAAAAGCAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCATATTAGAATCCAAATAAAATTGAACCAATACAAAAGCAGTAA  650

seq1  GATCCTGAAACAGTAATATATCATGGCAAAGCTAAAAATGTTTTTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGAAACAGTAATATATCATGGCAAAGCTAAAAATGTTTTTCTTTT  700

seq1  GACTATTGAGCCCTGAGCCCGTCTACATCCCAGTGATAAAGGAAGTAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTGAGCCCTGAGCCCGTCTACATCCCAGTGATAAAGGAAGTAGAT  750

seq1  AAAATAATGGCTTCAAAGTCTTTGAGAGTGATTTACTGGCAGTAGGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGGCTTCAAAGTCTTTGAGAGTGATTTACTGGCAGTAGGAATT  800

seq1  TTAGACATTACCCTTATAATGTAGGCTTTCAGACCTTAGAGGAGAAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACATTACCCTTATAATGTAGGCTTTCAGACCTTAGAGGAGAAAAAC  850

seq1  CTGACTTAGTTGCTGAATATTCAGGAGAGATTTGTTAGATTTAAGAGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTAGTTGCTGAATATTCAGGAGAGATTTGTTAGATTTAAGAGGGT  900

seq1  GGCCTGATAGGGAGATGAGCAAGTAGAGTCACCTCAGGAACTGACCAAAG  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCCTGATAGGGAGATGAGCAAGTAGAGTCACCTCA-GAACTGACCAAAG  949

seq1  AGGCAGAAAAAAAGGGAACAACATTTGGAAGAAAAAGGACTCTGGTTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGCAGAAAAAAAGGGAACAACATTTGGAAGAAAAAGGACTCTGG-TTCT  998

seq1  GAAGTAAATCATGGTTTCTAGAGAAGAACCAGGCCCACATACAAACATAC  1050
      |||||||||||| |||||||||| |||  |||||||||||||||||||||
seq2  GAAGTAAATCAT-GTTTCTAGAG-AGA--CAGGCCCACATACAAACATAC  1044

seq1  CACCGTGAGTCCATGGAGACGTTGCACGTGGGTTCCGTTTGATTTGTCTA  1100
      || ||||||| |||||||||| |||||||||  | ||||||| |||||||
seq2  CA-CGTGAGT-CATGGAGACG-TGCACGTGG--TTCGTTTGA-TTGTCTA  1088

seq1  TTTCTTAGTCTTTATCTTGAGAAAGTTACTTCCCTTTCCAAGTTTTACTT  1150
      ||   |||||||   |||||||||||||||||||||  || |  ||||||
seq2  TT--CTAGTCTT--ACTTGAGAAAGTTACTTCCCTT--CAGG--TTACTT  1130

seq1  TCCATGTGTATGGGTGAGGAAGCAAATGCTTTTTTTAAAAGAACATTGTA  1200
        ||||||||| ||||| ||||||||||| ||||    ||| ||| ||||
seq2  --CATGTGTAT-GGTGA-GAAGCAAATGCCTTTT----AAGGACA-TGTA  1171

seq1  AAGACGAGCTGAGA  1214
       |  ||||||||||
seq2  GA-CCGAGCTGAGA  1184