BAC Information

Click to search

BAC

Clone NameB6Ng01-108O20
Chromosome8 (Build37)
Map Location 78,144,411 - 78,317,926
singlet/doubletdoublet
Overlap gene1700007B14Rik, LOC666036
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229
Downstream geneLOC100039185, EG631594, LOC666226, LOC100039211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108O20.bB6Ng01-108O20.g
ACCDH915981DH915982
length1,145982
definitionDH915981|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O20, 5' end.DH915982|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,144,411 - 78,145,559)(78,316,944 - 78,317,926)
sequence
gaattcataaccaccccaggattgaatgagaattcatattatcagtattt
taaaaatctataatgtgagaaattaaagttatagttgaaaatgccatcaa
ctgcctgcaagaagcaaacacggatacatttacagggctatatcttgatt
acatcttatatccagcacatgtatttaaatttctatgaaatatgtataaa
taattttcattcttaagaaatattagttgtgaataatcattatttgtata
gaatacgagtttgtgatgtaagaaattaaatctcataaggacgtaagtca
ccaggggagagattgagttatcttctcctcacaaagaccataaatacata
aatgatcaggtaaaagataaaaacaactgaggtcaatatatatgcataca
cacacacacacacacacacacacacacacacacacacacacacacagatg
aatgagcaacagactatagatctagctgagaaggtgtgatgaggaactga
agaaacctgtagaagtttaagtatgatactgaaagaaagtagaattagta
aactagaaagcacagtgcaggaaaaagcacagaggtaaagaagaaagatg
aaaggtggaaccctggagaatgtgttgagtttaagtggaaataaacttct
gacttttctagccaagaaactaagtagagtgggggaaagtgtatttatta
gaagaggtgctgagcactgcttcatgcagccctgattccgtgtcggatgt
ggggaagagaaaggaacagtgtgcaagaaagagtgagcgaccacggtgat
ggacagcatggtatggggggctgccttggctctgcttggcctgatctgca
agttttggcattgtgaacatagaaaagaatcgtgatacaatacaaaataa
attaatatgtccatagtatattcaaatgagagcaaatgatgacatttttc
tacagaggaagccagcttataaacgattatataatagaattacagcacaa
ttctattaggtgagtgtttggcaccaagttatttagtgaatactaatgtc
ctttcaaaaaagacatttggattaatcatttatatgtagagtatcagcaa
agattggatagcaaacaaaatgctttcctctggtgaaggaagact
gaattctttaggggaaggatgtcttggccatgaaagtctaggctcacaac
caaaaacagaaaaaatcttgaagacaccggcccatcactgcaagaattta
cagctaaaataaaagctgctaaatacctctggtatcagaatgaggacaga
cggttttacaggaggataacatttctatcatttaagtgatattaattgaa
agcatgctaagttggcattgaaaagatcccttttgggggtgcttgtcagg
aaaataaatgatccaagatgtatgttttgcagagagattaagtggaattt
aaaatcttgacaaaaagagcatcatcacatcatgcaaaattggaatctaa
tgagctctggtaccaaggttctgaaaaaggctggccattagaggctctac
aaatggattccccccaaaatacttctccaacaattagatatatgtcatta
tatagaagacaagaaccaagaagtggcttccacttatacctaccattgac
tggctacctctcttctactttctttgttgtaatactagaagaaccaaaag
caataagacaatggaaagaggaaagggagtcaagacagtaaataagtgac
catgtatccctcctacaccccatttcctcttaccatcatctccctggctg
ccgctacagaacccagggtctagctagagctaaggcaatgattttgattg
gcaaataagttgacataaacattgttctagattattttattaactaaaaa
aataaagagctggaaaaatcaagatatttaagataaacctataattcaaa
gacaacgaaaaaagttttggtaaaatctgatcaccagtagagaaaaataa
aatgtatgtgctcacattctctagagacagtcactataatatgcaagatc
tatatgcctacacacacacacacagacacacacatgggagggaaaagtga
gagttgtgtgtgtgtgtgtgggagaagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_78144411_78145559
seq2: B6Ng01-108O20.b_48_1192

seq1  GAATTCATAACCACCCCAGGATTGAATGAGAATTCATATTATCAGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACCACCCCAGGATTGAATGAGAATTCATATTATCAGTATTT  50

seq1  TAAAAATCTATAATGTGAGAAATTAAAGTTATAGTTGAAAATGCCATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTATAATGTGAGAAATTAAAGTTATAGTTGAAAATGCCATCAA  100

seq1  CTGCCTGCAAGAAGCAAACACGGATACATTTACAGGGCTATATCTTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCAAGAAGCAAACACGGATACATTTACAGGGCTATATCTTGATT  150

seq1  ACATCTTATATCCAGCACATGTATTTAAATTTCTATGAAATATGTATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTATATCCAGCACATGTATTTAAATTTCTATGAAATATGTATAAA  200

seq1  TAATTTTCATTCTTAAGAAATATTAGTTGTGAATAATCATTATTTGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCATTCTTAAGAAATATTAGTTGTGAATAATCATTATTTGTATA  250

seq1  GAATACGAGTTTGTGATGTAAGAAATTAAATCTCATAAGGACGTAAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACGAGTTTGTGATGTAAGAAATTAAATCTCATAAGGACGTAAGTCA  300

seq1  CCAGGGGAGAGATTGAGTTATCTTCTCCTCACAAAGACCATAAATACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGAGAGATTGAGTTATCTTCTCCTCACAAAGACCATAAATACATA  350

seq1  AATGATCAGGTAAAAGATAAAAACAACTGAGGTCAATATATATGCATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCAGGTAAAAGATAAAAACAACTGAGGTCAATATATATGCATACA  400

seq1  CACACACACACACACACACACACACACACACACACACACACACACAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACAGATG  450

seq1  AATGAGCAACAGACTATAGATCTAGCTGAGAAGGTGTGATGAGGAACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCAACAGACTATAGATCTAGCTGAGAAGGTGTGATGAGGAACTGA  500

seq1  AGAAACCTGTAGAAGTTTAAGTATGATACTGAAAGAAAGTAGAATTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTGTAGAAGTTTAAGTATGATACTGAAAGAAAGTAGAATTAGTA  550

seq1  AACTAGAAAGCACAGTGCAGGAAAAAGCACAGAGGTAAAGAAGAAAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAAGCACAGTGCAGGAAAAAGCACAGAGGTAAAGAAGAAAGATG  600

seq1  AAAGGTGGAACCCTGGAGAATGTGTTGAGTTTAAGTGGAAATAAACTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGAACCCTGGAGAATGTGTTGAGTTTAAGTGGAAATAAACTTCT  650

seq1  GACTTTTCTAGCCAAGAAACTAAGTAGAGTGGGGGAAAGTGTATTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTCTAGCCAAGAAACTAAGTAGAGTGGGGGAAAGTGTATTTATTA  700

seq1  GAAGAGGTGCTGAGCACTGCTTCATGCAGCCCTGATTCCGTGTCGGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTGCTGAGCACTGCTTCATGCAGCCCTGATTCCGTGTCGGATGT  750

seq1  GGGGAAGAGAAAGGAACAGTGTGCAAGAAAGAGTGAGCGACCACGGTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAGAAAGGAACAGTGTGCAAGAAAGAGTGAGCGACCACGGTGAT  800

seq1  GGACAGCATGGTAT-GGGGGCTGCCTTGGCTCTGCTTGGCCTGATCTGCA  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGACAGCATGGTATGGGGGGCTGCCTTGGCTCTGCTTGGCCTGATCTGCA  850

seq1  AGTTTTGGCATTGTGAACATAGAAAAGAATCGTGATACAAATACAAAAAT  899
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  AGTTTTGGCATTGTGAACATAGAAAAGAATCGTGATAC-AATAC-AAAAT  898

seq1  AAATTAATATGTCCATAGTAATATTCAAAATGAGAGCAAATGATGACATT  949
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  AAATTAATATGTCCATAGT-ATATTC-AAATGAGAGCAAATGATGACATT  946

seq1  TTTCTTACAGAGGAAGCCAGCTTATAAACGATTATATAATAGAATTACAG  999
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTC-TACAGAGGAAGCCAGCTTATAAACGATTATATAATAGAATTACAG  995

seq1  CACAATTCTATTA-GTGAGTGTTTTGGCA-CAAGTTA-TTAGTGGATACT  1046
      ||||||||||||| ||||||| ||||||| ||||||| |||||| |||| 
seq2  CACAATTCTATTAGGTGAGTG-TTTGGCACCAAGTTATTTAGTGAATAC-  1043

seq1  TAATTGTCTTTC-AAAAAGACATTTTGGATTAATTCATTTATATGTTAGA  1095
      ||||   ||||| ||||||||| |||||||||| ||||||||||| ||||
seq2  TAATGTCCTTTCAAAAAAGACA-TTTGGATTAA-TCATTTATATG-TAGA  1090

seq1  GTATCAGCCAAAGATT-GATAGCAAACAAAAATGC-TTCCT-TGTAGAAG  1142
      ||||||| |||||||| |||||||||| ||||||| ||||| ||  ||||
seq2  GTATCAG-CAAAGATTGGATAGCAAAC-AAAATGCTTTCCTCTGGTGAAG  1138

seq1  GAAGACT  1149
      |||||||
seq2  GAAGACT  1145

seq1: chr8_78316944_78317926
seq2: B6Ng01-108O20.g_68_1049 (reverse)

seq1  TCTCTCTCTCTCTCACACACACACACACAACTCTCACTTTTTCCCTCCCA  50
      ||||||| |||| |||||||||||||||||||||||| ||||||||||||
seq2  TCTCTCT-TCTCCCACACACACACACACAACTCTCAC-TTTTCCCTCCCA  48

seq1  TGTGTGTGTCTGTGTGTGTGTGTGTAGGCATATAGATCTTGCATATTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTCTGTGTGTGTGTGTGTAGGCATATAGATCTTGCATATTATA  98

seq1  GTGACTGTCTCTAGAGAATGTGAGCACATACATTTTATTTTTCTCTACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGTCTCTAGAGAATGTGAGCACATACATTTTATTTTTCTCTACTG  148

seq1  GTGATCAGATTTTACCAAAACTTTTTTCGTTGTCTTTGAATTATAGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAGATTTTACCAAAACTTTTTTCGTTGTCTTTGAATTATAGGTTT  198

seq1  ATCTTAAATATCTTGATTTTTCCAGCTCTTTATTTTTTTAGTTAATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAATATCTTGATTTTTCCAGCTCTTTATTTTTTTAGTTAATAAAA  248

seq1  TAATCTAGAACAATG-TTATGTCAACTTATTTGCCAATCAAAATCATTGC  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAATCTAGAACAATGTTTATGTCAACTTATTTGCCAATCAAAATCATTGC  298

seq1  CTTAGCTCTAGCTAGACCCTGGGTTCTGTAGCGGCAGCCAGGGAGATGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTCTAGCTAGACCCTGGGTTCTGTAGCGGCAGCCAGGGAGATGAT  348

seq1  GGTAAGAGGAAATGGGGTGTAGGAGGGATACATGGTCACTTATTTACTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGGAAATGGGGTGTAGGAGGGATACATGGTCACTTATTTACTGT  398

seq1  CTTGACTCCCTTTCCTCTTTCCATTGTCTTATTGCTTTTGGTTCTTCTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTCCCTTTCCTCTTTCCATTGTCTTATTGCTTTTGGTTCTTCTAG  448

seq1  TATTACAACAAAGAAAGTAGAAGAGAGGTAGCCAGTCAATGGTAGGTATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAACAAAGAAAGTAGAAGAGAGGTAGCCAGTCAATGGTAGGTATA  498

seq1  AGTGGAAGCCACTTCTTGGTTCTTGTCTTCTATATAATGACATATATCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGCCACTTCTTGGTTCTTGTCTTCTATATAATGACATATATCTA  548

seq1  ATTGTTGGAGAAGTATTTTGGGGGGAATCCATTTGTAGAGCCTCTAATGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGAGAAGTATTTTGGGGGGAATCCATTTGTAGAGCCTCTAATGG  598

seq1  CCAGCCTTTTTCAGAACCTTGGTACCAGAGCTCATTAGATTCCAATTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTTTTCAGAACCTTGGTACCAGAGCTCATTAGATTCCAATTTTG  648

seq1  CATGATGTGATGATGCTCTTTTTGTCAAGATTTTAAATTCCACTTAATCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTGATGATGCTCTTTTTGTCAAGATTTTAAATTCCACTTAATCT  698

seq1  CTCTGCAAAACATACATCTTGGATCATTTATTTTCCTGACAAGCACCCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAAAACATACATCTTGGATCATTTATTTTCCTGACAAGCACCCCC  748

seq1  AAAAGGGATCTTTTCAATGCCAACTTAGCATGCTTTCAATTAATATCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGATCTTTTCAATGCCAACTTAGCATGCTTTCAATTAATATCACT  798

seq1  TAAATGATAGAAATGTTATCCTCCTGTAAAACCGTCTGTCCTCATTCTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATAGAAATGTTATCCTCCTGTAAAACCGTCTGTCCTCATTCTGA  848

seq1  TACCAGAGGTATTTAGCAGCTTTTATTTTAGCTGTAAATTCTTGCAGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAGGTATTTAGCAGCTTTTATTTTAGCTGTAAATTCTTGCAGTGA  898

seq1  TGGGCCGGTGTCTTCAAGATTTTTTCTGTTTTTGGTTGTGAGCCTAGACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCGGTGTCTTCAAGATTTTTTCTGTTTTTGGTTGTGAGCCTAGACT  948

seq1  TTCATGGCCAAGACATCCTTCCCCTAAAGAATTC  983
      ||||||||||||||||||||||||||||||||||
seq2  TTCATGGCCAAGACATCCTTCCCCTAAAGAATTC  982