BAC Information

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BAC

Clone NameB6Ng01-109B19
Chromosome8 (Build37)
Map Location 80,262,149 - 80,404,468
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
Downstream geneEG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6, EG666340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109B19.bB6Ng01-109B19.g
ACCDH916109DH916110
length1,1451,110
definitionDH916109|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B19, 5' end.DH916110|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,262,149 - 80,263,287)(80,403,343 - 80,404,468)
sequence
gaattcaagccaggaagtgtggagggtagtgggggaacacaaacatcaag
aagaacagcttcatctgcaccgcattccagtttcacagggatgctcacga
gttctcccttgaaggccaccaaaggcttttctttctcccctctctctgtc
tctgtctctctctgtctctttctcccctcatccatgcacaataaaagccc
agtgtctatattactcatcgggtataggtaacgtgctgtattgagcctgt
gttggtctcggagcttagatgggcaaatacacttgaccacttttgcacaa
acactttccttttacctgttgtcccagagtcaagccttcaccatcagcag
ctggagcagtggcacctgccatgtccctctcagcaataccttctcacgat
ccgctcacagctgacgcatgctctactgggctatttctagacacacccag
gaattccactgacatctagctcctggctaatttttttttcaagattttta
aactgcttgtttaattataacacccttttctcattgggtttttaataaga
aaaccaaaccaataacaaaaacaaaaacaaaaacaaccaaaacagtagga
atagcccctgaacccaagaaaatgggaagctaaatggctgggcaatcagg
ctgcaggctgtaggtgaaatattttcagagttgattagtttgctgcacta
gttgatttttctggagagtagtctttagttcatttaccacactaaagtct
cttaaaggaaagaaacagctttaacaatgtgtttacagctaacatttcta
aaagttttgtaatcttttctctctctctctctttctgagagcagtgcagt
aggggcttagtcacagacttgactaatgtttcagactgggtttttaaagc
agtattctttgggaaaaagagactaacagttggggagatggattggtggg
caaagtgcttgctgggcaagcttgaagactaagttcaatccccagcactc
atgtaaagcaggtatgctgggaagcaccttactcagcactggggaggcat
aaggcgggagagccaattggaatggctagcctagcaactgggtggagttc
taggttcatccgagcgattctgttctgtacacacatcaacacaca
gaattctcagctcttcctatatcttgcctgtgtagacactgccatgcttc
cggcttgatgataatggactgaactctgaacctgtaagtcagcctcaatt
aaatgttatccttctaagagttgcttttgtcatgatgtctgttcacaaca
gtaaaatcctaactaaagcatactctttcccttctggttgtagtatcggc
tacaacatgatcccagcgaaaaagagtttagtttctgtctacacactcca
ctcagagatcaagtcatgaataaggtttctctactgccaacacagcattc
ttttgcttatgccagaatttattttgatatttctgaagtgcacaatactg
catgctttccaactgttgtctgccttcctgaaatagtgcaagtttgatca
agggctctatggctatcaatcattgagaagaaggttggtgacaaatatgc
ataattgtcacatcaggacaagaaaagcaccatgcatattccacagtagg
tcccccaacacctagactatgcaaacaaaactgcttctcagttttcatag
ctctctctgtgcacggtcaagaccacaagccaataggtacttttctgttg
ggaaagctttaatttttaattggtaagaaatgaataatgtatatttttaa
aaataaaattgaatcaaaatgttacaattaaggttgatcatttattatcc
acattcagatacatctgtctgttataaatattaagccaaatggattgtga
gacatgggggcatcaactaaggactgttttcggtaaggcaatctatacag
ttattcttgtagcaaaaatagatgcttctaacctgccccacacccacatc
tctccccactgtcatcacaataaactccgaaagctctctccattttcatg
tatcataattatatatagttcttctgcttaatcagaaacaagtattgact
ttccattacattccaatggaactgaagtactagctctaccccctcttcct
aatatgatgcatcataccatagtaattagctagtttagtaatgttcaaat
taccatgtaagtgtttggggacttcacaatcagaacaagaattctaatgc
aggcctatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_80262149_80263287
seq2: B6Ng01-109B19.b_46_1190

seq1  GAATTCAAGCCAGGAAGTGTGGAGGGTAGTGGGGGAACACAAACATCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCAGGAAGTGTGGAGGGTAGTGGGGGAACACAAACATCAAG  50

seq1  AAGAACAGCTTCATCTGCACCGCATTCCAGTTTCACAGGGATGCTCACGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGCTTCATCTGCACCGCATTCCAGTTTCACAGGGATGCTCACGA  100

seq1  GTTCTCCCTTGAAGGCCACCAAAGGCTTTTCTTTCTCCCCTCTCTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCCTTGAAGGCCACCAAAGGCTTTTCTTTCTCCCCTCTCTCTGTC  150

seq1  TCTGTCTCTCTCTGTCTCTTTCTCCCCTCATCCATGCACAATAAAAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTCTGTCTCTTTCTCCCCTCATCCATGCACAATAAAAGCCC  200

seq1  AGTGTCTATATTACTCATCGGGTATAGGTAACGTGCTGTATTGAGCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTATATTACTCATCGGGTATAGGTAACGTGCTGTATTGAGCCTGT  250

seq1  GTTGGTCTCGGAGCTTAGATGGGCAAATACACTTGACCACTTTTGCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCTCGGAGCTTAGATGGGCAAATACACTTGACCACTTTTGCACAA  300

seq1  ACACTTTCCTTTTACCTGTTGTCCCAGAGTCAAGCCTTCACCATCAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTCCTTTTACCTGTTGTCCCAGAGTCAAGCCTTCACCATCAGCAG  350

seq1  CTGGAGCAGTGGCACCTGCCATGTCCCTCTCAGCAATACCTTCTCACGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAGTGGCACCTGCCATGTCCCTCTCAGCAATACCTTCTCACGAT  400

seq1  CCGCTCACAGCTGACGCATGCTCTACTGGGCTATTTCTAGACACACCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCACAGCTGACGCATGCTCTACTGGGCTATTTCTAGACACACCCAG  450

seq1  GAATTCCACTGACATCTAGCTCCTGGCTAATTTTTTTTTCAAGATTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGACATCTAGCTCCTGGCTAATTTTTTTTTCAAGATTTTTA  500

seq1  AACTGCTTGTTTAATTATAACACCCTTTTCTCATTGGGTTTTTAATAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTGTTTAATTATAACACCCTTTTCTCATTGGGTTTTTAATAAGA  550

seq1  AAACCAAACCAATAACAAAAACAAAAACAAAAACAACCAAAACAGTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACCAATAACAAAAACAAAAACAAAAACAACCAAAACAGTAGGA  600

seq1  ATAGCCCCTGAACCCAAGAAAATGGGAAGCTAAATGGCTGGGCAATCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCCTGAACCCAAGAAAATGGGAAGCTAAATGGCTGGGCAATCAGG  650

seq1  CTGCAGGCTGTAGGTGAAATATTTTCAGAGTTGATTAGTTTGCTGCACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCTGTAGGTGAAATATTTTCAGAGTTGATTAGTTTGCTGCACTA  700

seq1  GTTGATTTTTCTGGAGAGTAGTCTTTAGTTCATTTACCACACTAAAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTTTCTGGAGAGTAGTCTTTAGTTCATTTACCACACTAAAGTCT  750

seq1  CTTAAAGGAAAGAAACAGCTTTAACAATGTGTTTACAGCTAACATTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGGAAAGAAACAGCTTTAACAATGTGTTTACAGCTAACATTTCTA  800

seq1  AAAGTTTTGTAATC-TTTCTCTCTCTCTCTCTTTCTGAGAGCAGTGCAGT  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTGTAATCTTTTCTCTCTCTCTCTCTTTCTGAGAGCAGTGCAGT  850

seq1  AGGGGCTTAGTCACAGACTTGACTAATGTTTCAGACTGGTTTCTCATAGC  899
      ||||||||||||||||||||||||||||||||||||||| || | | |||
seq2  AGGGGCTTAGTCACAGACTTGACTAATGTTTCAGACTGGGTTTTTAAAGC  900

seq1  AGTATTCTTTGGGAAAAAGAGACTAACAGTTGGGGAGATGGATTGGTGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCTTTGGGAAAAAGAGACTAACAGTTGGGGAGATGGATTGGTGGG  950

seq1  CAAAGTGCTTGCTGGGCAAGCTTGAAGACTAAGTTCAATCCCCAGCACTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGCTTGCTGGGCAAGCTTGAAGACTAAGTTCAATCCCCAGCACTC  1000

seq1  ATGTAAAGCCAGGTATGCTGGGAAGCACCTAACTCCAGCACT-GGGAGGC  1048
      |||||||| ||||||||||||||||||||| ||| ||||||| |||||||
seq2  ATGTAAAG-CAGGTATGCTGGGAAGCACCTTACT-CAGCACTGGGGAGGC  1048

seq1  AT-AGGCGGGAGAGCC-ATTTGAATGGCTAGCCTAGCCAAACTGG--TGA  1094
      || ||||||||||||| ||| ||||||||||||||||  ||||||   ||
seq2  ATAAGGCGGGAGAGCCAATTGGAATGGCTAGCCTAGC--AACTGGGTGGA  1096

seq1  GTTCTAGGTTCAT-CGAGCGATCCTG-TCTGTACACACA--CACACACA  1139
      ||||||||||||| |||||||| ||| ||||||||||||   |||||||
seq2  GTTCTAGGTTCATCCGAGCGATTCTGTTCTGTACACACATCAACACACA  1145

seq1: chr8_80403343_80404468
seq2: B6Ng01-109B19.g_68_1177 (reverse)

seq1  ATATAGCCCTGCA-TAGGATTCTTTGTTCTGATTTGGTTTGAAGT-CACA  48
      |||||| |||||| ||| |||| ||||||||||    | |||||| | ||
seq2  ATATAGGCCTGCATTAGAATTC-TTGTTCTGAT----TGTGAAGTCCCCA  45

seq1  AACACTTACATGGTAAATATTTGAAACAATTACTAAACTAGCTAAATTAC  98
      |||||||||||||||   |||||||   ||||||||||||||| ||||||
seq2  AACACTTACATGGTA---ATTTGAA--CATTACTAAACTAGCT-AATTAC  89

seq1  TAATGGTATGATGCAATCATATTAGGAAGAAGGGGGTAGGAGGCTAGTAC  148
      | |||||||||||| |||||||||||||| |||||||||   ||||||||
seq2  T-ATGGTATGATGC-ATCATATTAGGAAG-AGGGGGTAG--AGCTAGTAC  134

seq1  TTCAGTTCCATTGGAATGTAATGGAAAGTCAATACTTGTTTCTGATTAAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCATTGGAATGTAATGGAAAGTCAATACTTGTTTCTGATTAAG  184

seq1  CAAGAAGAACTATATATAATTATGATACATGAAAATGGAGAGAGCTTTCG  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AGAAGAACTATATATAATTATGATACATGAAAATGGAGAGAGCTTTCG  233

seq1  GAGTTTATTGTGATTGACAGTGGGGAGAGATGTGGGTGTTGGGGCAGGTT  298
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  GAGTTTATTGTGA-TGACAGTGGGGAGAGATGTGGGTG-TGGGGCAGGTT  281

seq1  AGAAGCATCTATTTTTGCTACAAGAATAACTGTATAGATTGCCTTACCGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATCTATTTTTGCTACAAGAATAACTGTATAGATTGCCTTACCGA  331

seq1  AAACAGTCCTTAGTTGATG-CCCCATGTCTCACAATCCATTTGGCTTAAT  397
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAACAGTCCTTAGTTGATGCCCCCATGTCTCACAATCCATTTGGCTTAAT  381

seq1  ATTTATAACAGACAGATGTATCTGAATGTGGATAATAAATGATCAACCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAACAGACAGATGTATCTGAATGTGGATAATAAATGATCAACCTT  431

seq1  AATTGTAACATTTTGATTCAATTTTATTTTTAAAAATATACATTATTCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAACATTTTGATTCAATTTTATTTTTAAAAATATACATTATTCAT  481

seq1  TTCTTACCAATTAAAAATTAAAGCTTTCCCAACAGAAAAGTACCTATTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCAATTAAAAATTAAAGCTTTCCCAACAGAAAAGTACCTATTGG  531

seq1  CTTGTGGTCTTGACCGTGCACAGAGAGAGCTATGAAAACTGAGAAGCAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGTCTTGACCGTGCACAGAGAGAGCTATGAAAACTGAGAAGCAGT  581

seq1  TTTGTTTGCATAGTCTAGGTGTTGGGGGACCTACTGTGGAATATGCATGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGCATAGTCTAGGTGTTGGGGGACCTACTGTGGAATATGCATGG  631

seq1  TGCTTTTCTTGTCCTGATGTGACAATTATGCATATTTGTCACCAACCTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTTGTCCTGATGTGACAATTATGCATATTTGTCACCAACCTTC  681

seq1  TTCTCAATGATTGATAGCCATAGAGCCCTTGATCAAACTTGCACTATTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATGATTGATAGCCATAGAGCCCTTGATCAAACTTGCACTATTTC  731

seq1  AGGAAGGCAGACAACAGTTGGAAAGCATGCAGTATTGTGCACTTCAGAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCAGACAACAGTTGGAAAGCATGCAGTATTGTGCACTTCAGAAA  781

seq1  TATCAAAATAAATTCTGGCATAAGCAAAAGAATGCTGTGTTGGCAGTAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAATAAATTCTGGCATAAGCAAAAGAATGCTGTGTTGGCAGTAGA  831

seq1  GAAACCTTATTCATGACTTGATCTCTGAGTGGAGTGTGTAGACAGAAACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTATTCATGACTTGATCTCTGAGTGGAGTGTGTAGACAGAAACT  881

seq1  AAACTCTTTTTCGCTGGGATCATGTTGTAGCCGATACTACAACCAGAAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTTTTCGCTGGGATCATGTTGTAGCCGATACTACAACCAGAAGG  931

seq1  GAAAGAGTATGCTTTAGTTAGGATTTTACTGTTGTGAACAGACATCATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTATGCTTTAGTTAGGATTTTACTGTTGTGAACAGACATCATGA  981

seq1  CAAAAGCAACTCTTAGAAGGATAACATTTAATTGAGGCTGACTTACAGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAACTCTTAGAAGGATAACATTTAATTGAGGCTGACTTACAGGT  1031

seq1  TCAGAGTTCAGTCCATTATCATCAAGCCGGAAGCATGGCAGTGTCTACAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTCAGTCCATTATCATCAAGCCGGAAGCATGGCAGTGTCTACAC  1081

seq1  AGGCAAGATATAGGAAGAGCTGAGAATTC  1126
      |||||||||||||||||||||||||||||
seq2  AGGCAAGATATAGGAAGAGCTGAGAATTC  1110