BAC Information

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BAC

Clone NameB6Ng01-109F12
Chromosome8 (Build37)
Map Location 13,785,605 - 13,914,506
singlet/doubletdoublet
Overlap geneUpf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25
Upstream geneAtp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16
Downstream geneLOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140, C030037F17Rik, Cln8, Arhgef10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109F12.bB6Ng01-109F12.g
ACCDH916276DH916277
length1,0321,141
definitionDH916276|Mus musculus domesticus DNA, BAC clone: B6Ng01-109F12, 5' end.DH916277|Mus musculus domesticus DNA, BAC clone: B6Ng01-109F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,785,605 - 13,786,642)(13,913,337 - 13,914,506)
sequence
gaattccaagggaggggctgcctagtcctcgcgaggcttcgttctcgcgg
aggtggcggcggccggccggccggtggggatgcgctcggaagagggggcc
ggaggcttaggcgcagccctggctgcgcggggcccgagctggagggagaa
actatcgagctcagagacccactgccgccgcgagtcaccgcggaaggagt
cggcggcgcctccggccccgaccctaagtgagagcggggccggcaagcct
cgcgaggagaagaggacagccctgagcaaggtgggggcggggcccgcaag
tctcgcgagaggacggcttctaagccccccggtgggcggggcttggggag
ggcggggcgggttgttcatctcaggggcggagcctagtctccgaagtgat
gcgggctgttgcgagcagtctggactaggattagcgagtcggggtggagc
tggggagccgcggtcccccgagctccggggaacctcaggctgagtgggcg
tggcgggcggcagcacctgagtgaacgcaatggtcatcccaggtggtcct
ccggcgtctgcccccgggcctcaccaaagagcagctggaagagcaactgc
gccccctgccggcgcacgattacttcgaggtggtggctgcggacctcagg
tgagggctgctgcgggacacccactggtgaaggatggaggaccccgcggg
cgctcgcagttgcagtcccctcccagctgtcagtgcacgcccacgttagg
agcgggcaagtcacctcgtcagcccgttaccatgccttcctcggcgtagc
ttttaataaactgtatgatgagcaaaaccggactgcatcccttacacacg
ttgagtctggagtgttttccctagtgaggggccagtaactgagcctgaga
agtggaatctctcattgcttgcaccacacccagccagaaggttccctgcc
tgtggggatgcgagcacgcaggctgacctaagcagcagatgtcagtgcca
caggaattcgtgggtttccacgatactatttt
gaattccattctaaacagcggtccccaccccttccacccctgtgcagtgg
tatgtggcaaccaactgaatcaatccccgcttattccagacatcagagac
agaacgtcggagtggactatggtcaggaagtcagacaaggcatgagacca
gaagaaggaaggagcctggcttcattctaagaaaaccagaggcaggcagt
tggaaggcaaacgatctgatcagacctgtgctttacactgagtcaagggc
agcggactgggggtgcaacccgagccacactgaagcagtcagtcaggcac
aatggtgccatgtaggtgctgggaagtgaacctaggccgtctgcaagagc
agcaagtgctcctaaccactgagctctccggcaggcacacagcagagcag
caggcttgggagtggcaggggcagggatgcccactgagtattaaggtcca
aaggtgactcgcatacatactgaatgtaaaaaacagccccagctagtcac
gcttacatattcaagatgccgtctccctacagaggcttagctggtctctt
catgcaaacaaggcccttccacatctccacccgcttcatccgtctctgcc
actgtcacctgaaatcatttatcttctcctccaagagaatgcaatgtctt
gcttagtgttctacccaattaccagagcaatttcaggcacagccagagtt
cagtaaacatatctcagaagcgcatggcatcctacgactcagcagcatgg
gaaaaacgaaagtggcagaggaaggagttctagatggctcagcgggtaag
agcactgactgctcttccagaggtcctgagttcaattcccagcaaccaca
tggaggttcacaaccatctgtagtgggatcccatgccctcttctggtgag
tctgaagacagcctcagtgtacttacataaataaataaccctttagaaaa
aaaaagaaagaacacacgggtgacgggaaatggatgagacagccagggag
gacctgcgagaagactgaggctgtgagagaagcagagccaccaaagagca
cattagagaagatgacaggagaatttattcagaagcaacgacactgggtc
agggtggacagttttagtagttaaagatgcttgaattgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_13785605_13786642
seq2: B6Ng01-109F12.b_48_1079

seq1  GAATTCCAAGGGAGGGGCTGCCTAGTCCTCGCGAGGCTTCGTTCTCGCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGGAGGGGCTGCCTAGTCCTCGCGAGGCTTCGTTCTCGCGG  50

seq1  AGGTGGCGGCGGCCGGCCGGCCGGTGGGGATGCGCTCGGAAGAGGGGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCGGCGGCCGGCCGGCCGGTGGGGATGCGCTCGGAAGAGGGGGCC  100

seq1  GGAGGCTTAGGCGCAGCCCTGGCTGCGCGGGGCCCGAGCTGGAGGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTTAGGCGCAGCCCTGGCTGCGCGGGGCCCGAGCTGGAGGGAGAA  150

seq1  ACTATCGAGCTCAGAGACCCACTGCCGCCGCGAGTCACCGCGGAAGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCGAGCTCAGAGACCCACTGCCGCCGCGAGTCACCGCGGAAGGAGT  200

seq1  CGGCGGCGCCTCCGGCCCCGACCCTAAGTGAGAGCGGGGCCGGCAAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGGCGCCTCCGGCCCCGACCCTAAGTGAGAGCGGGGCCGGCAAGCCT  250

seq1  CGCGAGGAGAAGAGGACAGCCCTGAGCAAGGTGGGGGCGGGGCCCGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAGGAGAAGAGGACAGCCCTGAGCAAGGTGGGGGCGGGGCCCGCAAG  300

seq1  TCTCGCGAGAGGACGGCTTCTAAGCCCCCCGGTGGGCGGGGCTTGGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCGAGAGGACGGCTTCTAAGCCCCCCGGTGGGCGGGGCTTGGGGAG  350

seq1  GGCGGGGCGGGTTGTTCATCTCAGGGGCGGAGCCTAGTCTCCGAAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGGCGGGTTGTTCATCTCAGGGGCGGAGCCTAGTCTCCGAAGTGAT  400

seq1  GCGGGCTGTTGCGAGCAGTCTGGACTAGGATTAGCGAGTCGGGGTGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCTGTTGCGAGCAGTCTGGACTAGGATTAGCGAGTCGGGGTGGAGC  450

seq1  TGGGGAGCCGCGGTCCCCCGAGCTCCGGGGAACCTCAGGCTGAGTGGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGCCGCGGTCCCCCGAGCTCCGGGGAACCTCAGGCTGAGTGGGCG  500

seq1  TGGCGGGCGGCAGCACCTGAGTGAACGCAATGGTCATCCCAGGTGGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGGCGGCAGCACCTGAGTGAACGCAATGGTCATCCCAGGTGGTCCT  550

seq1  CCGGCGTCTGCCCCCGGGCCTCACCAAAGAGCAGCTGGAAGAGCAACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCGTCTGCCCCCGGGCCTCACCAAAGAGCAGCTGGAAGAGCAACTGC  600

seq1  GCCCCCTGCCGGCGCACGATTACTTCGAGGTGGTGGCTGCGGACCTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTGCCGGCGCACGATTACTTCGAGGTGGTGGCTGCGGACCTCAGG  650

seq1  TGAGGGCTGCTGCGGGACACCCACTGGTGAAGGATGGAGGACCCCGCGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCTGCTGCGGGACACCCACTGGTGAAGGATGGAGGACCCCGCGGG  700

seq1  CGCTCGCAGTTGCAGTCCCCTCCCAGCTGTCAGTGCACGCCCACGTTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCGCAGTTGCAGTCCCCTCCCAGCTGTCAGTGCACGCCCACGTTAGG  750

seq1  AGCGGGCAAGTCACCTCGTCAGCCCGTTACCATGCCTTCCTCGGCGTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGCAAGTCACCTCGTCAGCCCGTTACCATGCCTTCCTCGGCGTAGC  800

seq1  TTTTAATAAACTGTATGATGAGCAAAACCGGACTGCATCCCTTACACACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAAACTGTATGATGAGCAAAACCGGACTGCATCCCTTACACACG  850

seq1  TTGAGTCTGGAGTGTTTTCCCTAGTGAGGGACCAGTAACTGAGCCCTGAG  900
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  TTGAGTCTGGAGTGTTTTCCCTAGTGAGGGGCCAGTAACTGAG-CCTGAG  899

seq1  AAGTGGAATCTCTCATTGCTTGCACCACCACCCAGCCAGAAGGTTCCCTG  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGTGGAATCTCTCATTGCTTGCACCA-CACCCAGCCAGAAGGTTCCCTG  948

seq1  CCTGTGGGGATGCGAGCAACGCAGGGCTGACCTAAGCAGCAGATGTCAGT  1000
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  CCTGTGGGGATGCGAGC-ACGCA-GGCTGACCTAAGCAGCAGATGTCAGT  996

seq1  GCCACAGGAATTCGTGGGTTTTCCACGATACTTATTTT  1038
      |||||||||||||||||| |||||||||||| ||||||
seq2  GCCACAGGAATTCGTGGG-TTTCCACGATAC-TATTTT  1032

seq1: chr8_13913337_13914506
seq2: B6Ng01-109F12.g_66_1206 (reverse)

seq1  GTGCAAATCAAAGCATCCTCTATAACTAAACTAAAAACTGTCCACCCGTG  50
      |||||| || |||||   ||| |||||  ||| |||||||||||||| ||
seq2  GTGCAATTC-AAGCA---TCTTTAACT--ACT-AAAACTGTCCACCC-TG  42

seq1  AACCCCAGTGTCGTATGGCTTCTTGATAATATTTCTCCTGTCATCCCTTT  100
      |  ||||||||||  | ||||||  |||  | |||||||||||||   ||
seq2  A--CCCAGTGTCG--TTGCTTCTGAATA--AATTCTCCTGTCATC---TT  83

seq1  CTCTAAATGTGCTCTTTGGTTGGCTCCTGCCTTTCTCTCCACAGCCTCAG  150
      |||| |||||||||||||| ||||| ||||  |||||| |||||||||||
seq2  CTCT-AATGTGCTCTTTGG-TGGCT-CTGC--TTCTCT-CACAGCCTCAG  127

seq1  TCTTCTTCGCAGGTCCCTTCCCTGGCTTGTCTCCATCCATTTCCCGTCAC  200
      ||||| ||||||||||  |||||||| ||||| |||||||||||||||||
seq2  TCTTC-TCGCAGGTCC--TCCCTGGC-TGTCT-CATCCATTTCCCGTCAC  172

seq1  CCGTTGTGTTCTTTC-TTTTTTTTCTAAAGGTTTATTTTATTTATGTAAG  249
      ||| ||||||||||| ||||||||||||||| ||| ||||||||||||||
seq2  CCG-TGTGTTCTTTCTTTTTTTTTCTAAAGGGTTA-TTTATTTATGTAAG  220

seq1  TACACTGAGGCTGTCTTCAGACTCACCAGAAGAGGGCATGGGATCCCACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGAGGCTGTCTTCAGACTCACCAGAAGAGGGCATGGGATCCCACT  270

seq1  ACAGATGGTTGTGAACCTCCATGTGGTTGCTGGGAATTGAACTCAGGACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGTTGTGAACCTCCATGTGGTTGCTGGGAATTGAACTCAGGACC  320

seq1  TCTGGAAGAGCAGTCAGTGCTCTTACCCGCTGAGCCATCTAGAACTCCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGAGCAGTCAGTGCTCTTACCCGCTGAGCCATCTAGAACTCCTT  370

seq1  CCTCTGCCACCTTCGTTTTTCCCATGCTGCTGAGTCGTAGGATGCCATGC  449
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCACTTTCGTTTTTCCCATGCTGCTGAGTCGTAGGATGCCATGC  420

seq1  GCTTCTGAGATATGTTTACTGAACTCTGGCTGTGCCTGAAATTGCTCTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGAGATATGTTTACTGAACTCTGGCTGTGCCTGAAATTGCTCTGG  470

seq1  TAATTGGGTAGAACACTAAGCAAGACATTGCATTCTCTTGGAGGAGAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGGTAGAACACTAAGCAAGACATTGCATTCTCTTGGAGGAGAAGA  520

seq1  TAAATGATTTCAGGTGACAGTGGCAGAGACGGATGAAGCGGGTGGAGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATTTCAGGTGACAGTGGCAGAGACGGATGAAGCGGGTGGAGATG  570

seq1  TGGAAGGGCCTTGTTTGCATGAAGAGACCAGCTAAGCCTCTGTAGGGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGCCTTGTTTGCATGAAGAGACCAGCTAAGCCTCTGTAGGGAGA  620

seq1  CGGCATCTTGAATATGTAAGCGTGACTAGCTGGGGCTGTTTTTTACATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATCTTGAATATGTAAGCGTGACTAGCTGGGGCTGTTTTTTACATTC  670

seq1  AGTATGTATGCGAGTCACCTTTGGACCTTAATACTCAGTGGGCATCCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTATGCGAGTCACCTTTGGACCTTAATACTCAGTGGGCATCCCTG  720

seq1  CCCCTGCCACTCCCAAGCCTGCTGCTCTGCTGTGTGCCTGCCGGAGAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCACTCCCAAGCCTGCTGCTCTGCTGTGTGCCTGCCGGAGAGCT  770

seq1  CAGTGGTTAGGAGCACTTGCTGCTCTTGCAGACGGCCTAGGTTCACTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTAGGAGCACTTGCTGCTCTTGCAGACGGCCTAGGTTCACTTCC  820

seq1  CAGCACCTACATGGCACCATTGTGCCTGACTGACTGCTTCAGTGTGGCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTACATGGCACCATTGTGCCTGACTGACTGCTTCAGTGTGGCTC  870

seq1  GGGTTGCACCCCCAGTCCGCTGCCCTTGACTCAGTGTAAAGCACAGGTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCACCCCCAGTCCGCTGCCCTTGACTCAGTGTAAAGCACAGGTCT  920

seq1  GATCAGATCGTTTGCCTTCCAACTGCCTGCCTCTGGTTTTCTTAGAATGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGATCGTTTGCCTTCCAACTGCCTGCCTCTGGTTTTCTTAGAATGA  970

seq1  AGCCAGGCTCCTTCCTTCTTCTGGTCTCATGCCTTGTCTGACTTCCTGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCTCCTTCCTTCTTCTGGTCTCATGCCTTGTCTGACTTCCTGAC  1020

seq1  CATAGTCCACTCCGACGTTCTGTCTCTGATGTCTGGAATAAGCGGGGATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCCACTCCGACGTTCTGTCTCTGATGTCTGGAATAAGCGGGGATT  1070

seq1  GATTCAGTTGGTTGCCACATACCACTGCACAGGGGTGGAAGGGGTGGGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGTTGGTTGCCACATACCACTGCACAGGGGTGGAAGGGGTGGGGA  1120

seq1  CCGCTGTTTAGAATGGAATTC  1170
      |||||||||||||||||||||
seq2  CCGCTGTTTAGAATGGAATTC  1141