BAC Information

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BAC

Clone NameB6Ng01-109L01
Chromosome8 (Build37)
Map Location 18,427,215 - 18,526,381
singlet/doubletdoublet
Overlap geneLOC100040466
Upstream geneCsmd1, LOC665638
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109L01.bB6Ng01-109L01.g
ACCDH916532DH916533
length1,0721,133
definitionDH916532|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L01, 5' end.DH916533|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,525,317 - 18,526,381)(18,427,215 - 18,428,351)
sequence
gaattcactctgttgtcttaggctaagaagttaacagtgagcttctgtcg
ctgtctcatgaattccaaacaccctgggaaacatttagtagatttgaatc
aaagcgaatgaaaccgttcattagaagatgccacaaaatactagctctaa
gtgctgctcagctgtgtccttttctgctttcagactttttcccttttaag
caggaggatgtctctcagcttatggtgggtttcagaaaaacattgtgggc
atgatggctgatttcagcatggtgaagtggcagagcgggaagcattggtg
agaacagatgtgacaacactgagcacaggcatgtgacacaatcacctgtc
atccaaatcctagtacagtacttatcaactatacacattcaacacaatgc
tatccaataagttaacaaatgcaggcccatggcatcaaaatatccacata
tgtcctgtagactcctttctcctctgcctctctggggttgaccagataga
cattgcacaatctggtcctaggaatggacttcctgccatctttgggatgt
taagactgctgtctttttcctctgtgggagaatccagggaagtttctgaa
gatttactgtcatagtcattctggttgtctatattcctgtcacattgcac
ctcaaaacttaccggcttaatgattttattacgaacacaggctatcttgg
taattcttgttctccagatagactgtctgtctttccttctatatctgatg
ggagaacaggtttgaagggcccatgtggctttctttccatacttgctgcc
ttggtagagatagaggggaggctggcatcagctagggacagaaggaagag
catctaccatgactctcaagcatcttgtcctccagtaggtagaggacaag
accatctgttttgaagtcttgacagataacattttgtttgttctatgagt
caatggctagggagctcagctatgtctcaaggcagacaacatcaaacctg
ccattggaatggaaggtggtgtaaaataaaatgtggccttccttttctcc
tctctcttctcttcctcttctc
gaattccaaatgctatttcccagcaagctaaggtaaagcaggcttttcag
cagatagctcttcttctgagaagcaaagaagcaagcacctcatccctgag
acagaggaatggccagcagtgaggttcccttcacgtcagcctgtcacctt
ccatccaaacaatgatccagagaacataaaggattcaaaccctgtcctct
gctgtcaagtcctaaaactcttatctggactgaagtttcagtctattaat
gtctaggaactcaatggctccctggagctcaaaagacaagcctcagccct
atctcatggtcatacaaaatgcactaattacactctcatcctctgaaata
gaaggagatgacaacccttaagatggctaattctgaggtcaccctgacct
ggaggtgaagacttgtttattcttattcccttgaaatgtattctgttatg
tagctggaatacccaacagaaatagctcttctgttgaacaaattcatgtt
gtgcttcctcctacggggttgtcatgtgcatagagtcgcttcttctttct
ggcctccagatgcctttgcctcaaggctggagacagggcaagaagcaaag
gaaaaaaaacttcagctttacagtttccattgctgtcctttctgcatgag
ttgagaaaggctttccaataagacattccttgctcacatacagtcatttg
caaacagctatggctaaaccatcaccaattccaaaggcaaacaagtaaac
aaactccaagaaaggaacaagggctcacgtaagaggatgtgctggtaata
atctaatactgagtaaaagaagactttttttataagaaggaaaaaacaaa
tatgctaaccagaatatgttttgtgagcaccagaattttctcagtcccta
tttgccagggctacagaccaagtactgcctcctatagaagtttgtatctt
ccactggaagaagtagattctaagagtgaccccactctgactgtttagtg
tgatgaaggccaatgtgatggtcttcagggagatgggataataaaacacc
tgggcagtggggaggctgaacatcaggctgcatccaattagccacacaaa
aggtctgcaagtcaaagcaacagtatgatcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18525317_18526381
seq2: B6Ng01-109L01.b_49_1120 (reverse)

seq1  GAGAAGA-GAAGAGAAGAGAG------AAAAGAAGGCCACATTTTATTTT  43
      ||||||| |||||||||||||      ||| |||||||||||||||||||
seq2  GAGAAGAGGAAGAGAAGAGAGAGGAGAAAAGGAAGGCCACATTTTATTTT  50

seq1  ACA-CACCTTCCA-TCCAATGGCAGGTTTGATGTTGTCTGCCCTGAGACA  91
      ||| ||||||||| |||||||||||||||||||||||||||| |||||||
seq2  ACACCACCTTCCATTCCAATGGCAGGTTTGATGTTGTCTGCCTTGAGACA  100

seq1  TAGCTGAGCTCCCTAGCCATTTGACTCATAGAACAAAACAAAATGTTATC  141
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  TAGCTGAGCTCCCTAGCCA-TTGACTCATAGAAC-AAACAAAATGTTATC  148

seq1  TGTTCAGACTTCAAAAGCAGATGGTCTTGTCCTCTACTTACTGGAGGACA  191
      |||  ||||||||||| |||||||||||||||||||| ||||||||||||
seq2  TGTCAAGACTTCAAAA-CAGATGGTCTTGTCCTCTACCTACTGGAGGACA  197

seq1  AGATGCTTGAGAGTCATGGTAGATGCTCTTCCTTCTGT-CCTAGCTGATG  240
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGATGCTTGAGAGTCATGGTAGATGCTCTTCCTTCTGTCCCTAGCTGATG  247

seq1  CCAGCCTCCCCTCTATCTCTACCAAGGCAGCAAGTATGGAAAGAAAGCCA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCCCCTCTATCTCTACCAAGGCAGCAAGTATGGAAAGAAAGCCA  297

seq1  CATGGGCCCTTCAAACCTGTTCTCCCATCAGATATAGAAGGAAAGACAGA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCCCTTCAAACCTGTTCTCCCATCAGATATAGAAGGAAAGACAGA  347

seq1  CAGTCTATCTGGAGAACAAGAATTACCAAGATAGCCTGTGTTCGTAATAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTATCTGGAGAACAAGAATTACCAAGATAGCCTGTGTTCGTAATAA  397

seq1  AATCATTAAGCCGGTAAGTTTTGAGGTGCAATGTGACAGGAATATAGACA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTAAGCCGGTAAGTTTTGAGGTGCAATGTGACAGGAATATAGACA  447

seq1  ACCAGAATGACTATGACAGTAAATCTTCAGAAACTTCCCTGGATTCTCCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATGACTATGACAGTAAATCTTCAGAAACTTCCCTGGATTCTCCC  497

seq1  ACAGAGGAAAAAGACAGCAGTCTTAACATCCCAAAGATGGCAGGAAGTCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAAAAAGACAGCAGTCTTAACATCCCAAAGATGGCAGGAAGTCC  547

seq1  ATTCCTAGGACCAGATTGTGCAATGTCTATCTGGTCAACCCCAGAGAGGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGGACCAGATTGTGCAATGTCTATCTGGTCAACCCCAGAGAGGC  597

seq1  AGAGGAGAAAGGAGTCTACAGGACATATGTGGATATTTTGATGCCATGGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAAAGGAGTCTACAGGACATATGTGGATATTTTGATGCCATGGG  647

seq1  CCTGCATTTGTTAACTTATTGGATAGCATTGTGTTGAATGTGTATAGTTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATTTGTTAACTTATTGGATAGCATTGTGTTGAATGTGTATAGTTG  697

seq1  ATAAGTACTGTACTAGGATTTGGATGACAGGTGATTGTGTCACATGCCTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACTGTACTAGGATTTGGATGACAGGTGATTGTGTCACATGCCTG  747

seq1  TGCTCAGTGTTGTCACATCTGTTCTCACCAATGCTTCCCGCTCTGCCACT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTGTTGTCACATCTGTTCTCACCAATGCTTCCCGCTCTGCCACT  797

seq1  TCACCATGCTGAAATCAGCCATCATGCCCACAATGTTTTTCTGAAACCCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGCTGAAATCAGCCATCATGCCCACAATGTTTTTCTGAAACCCA  847

seq1  CCATAAGCTGAGAGACATCCTCCTGCTTAAAAGGGAAAAAGTCTGAAAGC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGCTGAGAGACATCCTCCTGCTTAAAAGGGAAAAAGTCTGAAAGC  897

seq1  AGAAAAGGACACAGCTGAGCAGCACTTAGAGCTAGTATTTTGTGGCATCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGACACAGCTGAGCAGCACTTAGAGCTAGTATTTTGTGGCATCT  947

seq1  TCTAATGAACGGTTTCATTCGCTTTGATTCAAATCTACTAAATGTTTCCC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGAACGGTTTCATTCGCTTTGATTCAAATCTACTAAATGTTTCCC  997

seq1  AGGGTGTTTGGAATTCATGAGACAGCGACAGAAGCTCACTGTTAACTTCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTTTGGAATTCATGAGACAGCGACAGAAGCTCACTGTTAACTTCT  1047

seq1  TAGCCTAAGACAACAGAGTGAATTC  1065
      |||||||||||||||||||||||||
seq2  TAGCCTAAGACAACAGAGTGAATTC  1072

seq1: chr8_18427215_18428351
seq2: B6Ng01-109L01.g_66_1198

seq1  GAATTCCAAATGCTATTTCCCAGCAAGCTAAGGTAAAGCAGGCTTTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATGCTATTTCCCAGCAAGCTAAGGTAAAGCAGGCTTTTCAG  50

seq1  CAGATAGCTCTTCTTCTGAGAAGCAAAGAAGCAAGCACCTCATCCCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCTCTTCTTCTGAGAAGCAAAGAAGCAAGCACCTCATCCCTGAG  100

seq1  ACAGAGGAATGGCCAGCAGTGAGGTTCCCTTCACGTCAGCCTGTCACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAATGGCCAGCAGTGAGGTTCCCTTCACGTCAGCCTGTCACCTT  150

seq1  CCATCCAAACAATGATCCAGAGAACATAAAGGATTCAAACCCTGTCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAAACAATGATCCAGAGAACATAAAGGATTCAAACCCTGTCCTCT  200

seq1  GCTGTCAAGTCCTAAAACTCTTATCTGGACTGAAGTTTCAGTCTATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAAGTCCTAAAACTCTTATCTGGACTGAAGTTTCAGTCTATTAAT  250

seq1  GTCTAGGAACTCAATGGCTCCCTGGAGCTCAAAAGACAAGCCTCAGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGAACTCAATGGCTCCCTGGAGCTCAAAAGACAAGCCTCAGCCCT  300

seq1  ATCTCATGGTCATACAAAATGCACTAATTACACTCTCATCCTCTGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATGGTCATACAAAATGCACTAATTACACTCTCATCCTCTGAAATA  350

seq1  GAAGGAGATGACAACCCTTAAGATGGCTAATTCTGAGGTCACCCTGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGATGACAACCCTTAAGATGGCTAATTCTGAGGTCACCCTGACCT  400

seq1  GGAGGTGAAGACTTGTTTATTCTTATTCCCTTGAAATGTATTCTGTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGAAGACTTGTTTATTCTTATTCCCTTGAAATGTATTCTGTTATG  450

seq1  TAGCTGGAATACCCAACAGAAATAGCTCTTCTGTTGAACAAATTCATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGAATACCCAACAGAAATAGCTCTTCTGTTGAACAAATTCATGTT  500

seq1  GTGCTTCCTCCTACGGGGTTGTCATGTGCATAGAGTCGCTTCTTCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCTCCTACGGGGTTGTCATGTGCATAGAGTCGCTTCTTCTTTCT  550

seq1  GGCCTCCAGATGCCTTTGCCTCAAGGCTGGAGACAGGGCAAGAAGCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCAGATGCCTTTGCCTCAAGGCTGGAGACAGGGCAAGAAGCAAAG  600

seq1  GAAAAAAAACTTCAGCTTTACAGTTTCCATTGCTGTCCTTTCTGCATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAACTTCAGCTTTACAGTTTCCATTGCTGTCCTTTCTGCATGAG  650

seq1  TTGAGAAAGGCTTTCCAATAAGACATTCCTTGCTCACATACAGTCATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAGGCTTTCCAATAAGACATTCCTTGCTCACATACAGTCATTTG  700

seq1  CAAACAGCTATGGCTAAACCATCACCAATTCCAAAGGCAAACAAGTAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCTATGGCTAAACCATCACCAATTCCAAAGGCAAACAAGTAAAC  750

seq1  AAACTCCAAGAAAGGAACAAGGGCTCACGTAAGAGGATGTGCTGGTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAAGAAAGGAACAAGGGCTCACGTAAGAGGATGTGCTGGTAATA  800

seq1  ATCTAATACTGAGTAAAAGAAGACTTTTTTTTATAAGAAGG-AGAAACAA  849
      |||||||||||||||||||||||| |||||||||||||||| | ||||||
seq2  ATCTAATACTGAGTAAAAGAAGAC-TTTTTTTATAAGAAGGAAAAAACAA  849

seq1  ATATGCTAAACCAGAATATGTTTTGTGAGCACCAGAATTTTCTCAGTCCC  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCT-AACCAGAATATGTTTTGTGAGCACCAGAATTTTCTCAGTCCC  898

seq1  TA-TTGCCAGGGCTACAGACCCAGTACTGCCTCCTATAG-AGTTTGTATC  947
      || |||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  TATTTGCCAGGGCTACAGACCAAGTACTGCCTCCTATAGAAGTTTGTATC  948

seq1  TTCCACTGGAAGAAGTAGATTCTAAGAGTGACCCCACTCTGACTGTGTCA  997
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  TTCCACTGGAAGAAGTAGATTCTAAGAGTGACCCCACTCTGACTGT-TTA  997

seq1  GTGTGATGAAGGCCAATGTGATGGTCTTCAGGGAGGATGGATTATAAACA  1047
      |||||||||||||||||||||||||||||||||||   |||| ||||| |
seq2  GTGTGATGAAGGCCAATGTGATGGTCTTCAGGGAGATGGGATAATAAA-A  1046

seq1  CCCTGGGGCAGTGGGGGAGGCTG-ACATCCAGCTGTCATCCCAATTAGCC  1096
      | |  ||||||| |||||||||| |||||  |||| ||| ||||||||||
seq2  CACCTGGGCAGT-GGGGAGGCTGAACATCAGGCTG-CAT-CCAATTAGCC  1093

seq1  ACACCAGAAAGTCTGCAGGTCAAAGCAACAGAATGATCATG  1137
      ||| || || ||||||| ||||||||||||| |||||||||
seq2  ACA-CAAAAGGTCTGCAAGTCAAAGCAACAGTATGATCATG  1133