BAC Information

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BAC

Clone NameB6Ng01-109O21
Chromosome8 (Build37)
Map Location 61,264,771 - 61,385,475
singlet/doubletdoublet
Overlap gene4930431L04Rik
Upstream geneLOC100040711
Downstream geneBC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109O21.bB6Ng01-109O21.g
ACCDH916701DH916702
length1541,043
definitionDH916701|Mus musculus domesticus DNA, BAC clone: B6Ng01-109O21, 5' end.DH916702|Mus musculus domesticus DNA, BAC clone: B6Ng01-109O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,385,175 - 61,385,475)(61,264,771 - 61,265,803)
sequence
atcacagttccctatgggagatcatgtgaagcactgtgtgttgcggtttt
gatacccatctgatccaccaaagaaagaaagaaagaaagaaagagagaga
gagagagagagagagagagagagagagagagagagaggaaggaaggaagg
aagg
gaattctttctacagtgaagaaccataaaagtaggtagggaggctgttga
atcaggatcttttcttaaaggtagaaaaacctgccatgctacaactgaag
tactctggtcttcagaaggataaatgaaataaagaatctcctcaaagtag
ctatggagtggccaactgtggagcagatacagttggcatttactcaaaaa
taaaagtataaaggatgcttggctttaaagtgctctctactgtcaaaaat
atgaaaggctttccctgtatatatctagcattttttagaacattgacact
cactgtgtgtaagtgggaaaggatcatatttcagtagaaaatgcttggag
tggatgctgactttttgcaaagttaattgcctctggtatcatatatgaaa
gaaagaatgcagatcagatagtattagtgggttaacaagacaggataact
gtaaggctaagagttctgcagtgatttcatgcaacaaagcatcaaacttc
tttcacaatccatgcagattgctgagcatggcacttccaactagtgttac
tgagttgtttgttataaacgtatattcacagcaatgtgctatattgtgga
tcttaaaaggccaaggatatttttaagttgtgaaagtgcttgacttgtaa
acataagggtccaggttcaatccatatacttcatataagattgctagtca
tttgagcatgaacctataatcttggctctgggaacgtgaatttaggtaga
tcactaagtctcactgctttgtcagtgaagattaactggtaagctataga
ccaatgagagttggcttgttgcctcctgtctatgcaaatatatgtgtata
tgtacatgcacacacacacacatacactcacatacacacacacgtgagag
agaggagagaggaagagagagagagtaatgaaactagtcataaataatac
catatcacaaatgttctgtatatttgaacaccatagttcttggagaaagt
atctatctaaaaaaatggttgaaatggggggttttagtgggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_61385175_61385475
seq2: B6Ng01-109O21.b_52_205 (reverse)

seq1  CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCTCTCTCTTTCTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  150
                                                 |||||||
seq2  -------------------------------------------CCTTCCT  7

seq1  TCCTTCCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  200
      ||||||||||    ||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTC----CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  53

seq1  CTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTGGTGGATCAGATGGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTGGTGGATCAGATGGGTAT  103

seq1  CAAAACCGCAACACACAGTGCTTCACATGATCTCCCATAGGGAACTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCGCAACACACAGTGCTTCACATGATCTCCCATAGGGAACTGTGA  153

seq1  T  301
      |
seq2  T  154

seq1: chr8_61264771_61265803
seq2: B6Ng01-109O21.g_70_1112

seq1  GAATTCTTTCTACAGTGAAGAACCATAAAAGTAGGTAGGGAGGCTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTACAGTGAAGAACCATAAAAGTAGGTAGGGAGGCTGTTGA  50

seq1  ATCAGGATCTTTTCTTAAAGGTAGAAAAACCTGCCATGCTACAACTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGATCTTTTCTTAAAGGTAGAAAAACCTGCCATGCTACAACTGAAG  100

seq1  TACTCTGGTCTTCAGAAGGATAAATGAAATAAAGAATCTCCTCAAAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGGTCTTCAGAAGGATAAATGAAATAAAGAATCTCCTCAAAGTAG  150

seq1  CTATGGAGTGGCCAACTGTGGAGCAGATACAGTTGGCATTTACTCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAGTGGCCAACTGTGGAGCAGATACAGTTGGCATTTACTCAAAAA  200

seq1  TAAAAGTATAAAGGATGCTTGGCTTTAAAGTGCTCTCTACTGTCAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTATAAAGGATGCTTGGCTTTAAAGTGCTCTCTACTGTCAAAAAT  250

seq1  ATGAAAGGCTTTCCCTGTATATATCTAGCATTTTTTAGAACATTGACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGCTTTCCCTGTATATATCTAGCATTTTTTAGAACATTGACACT  300

seq1  CACTGTGTGTAAGTGGGAAAGGATCATATTTCAGTAGAAAATGCTTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTGTAAGTGGGAAAGGATCATATTTCAGTAGAAAATGCTTGGAG  350

seq1  TGGATGCTGACTTTTTGCAAAGTTAATTGCCTCTGGTATCATATATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTGACTTTTTGCAAAGTTAATTGCCTCTGGTATCATATATGAAA  400

seq1  GAAAGAATGCAGATCAGATAGTATTAGTGGGTTAACAAGACAGGATAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATGCAGATCAGATAGTATTAGTGGGTTAACAAGACAGGATAACT  450

seq1  GTAAGGCTAAGAGTTCTGCAGTGATTTCATGCAACAAAGCATCAAACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCTAAGAGTTCTGCAGTGATTTCATGCAACAAAGCATCAAACTTC  500

seq1  TTTCACAATCCATGCAGATTGCTGAGCATGGCACTTCCAACTAGTGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAATCCATGCAGATTGCTGAGCATGGCACTTCCAACTAGTGTTAC  550

seq1  TGAGTTGTTTGTTATAAACGTATATTCACAGCAATGTGCTATATTGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGTTTGTTATAAACGTATATTCACAGCAATGTGCTATATTGTGGA  600

seq1  TCTTAAAAGGCCAAGGATATTTTTAAGTTGTGAAAGTGCTTGACTTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAGGCCAAGGATATTTTTAAGTTGTGAAAGTGCTTGACTTGTAA  650

seq1  ACATAAGGGTCCAGGTTCAATCCATATACTTCATATAAGATTGCTAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGGGTCCAGGTTCAATCCATATACTTCATATAAGATTGCTAGTCA  700

seq1  TTTGAGCATGAACCTATAATCTTGGCTCTGGGAACGTGAATTTAGGTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCATGAACCTATAATCTTGGCTCTGGGAACGTGAATTTAGGTAGA  750

seq1  TCACTAAGTCTCACTGCTTTGTCAGTGAAGATTAACTGGTAAGCTATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAGTCTCACTGCTTTGTCAGTGAAGATTAACTGGTAAGCTATAGA  800

seq1  CCAATGAGAGTTGGCTTGTTGCCTCCTGTCTATGCAAATATATGTGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGAGTTGGCTTGTTGCCTCCTGTCTATGCAAATATATGTGTATA  850

seq1  TGTACATGCACACACACACACATACACTCACATACACACACACGTGAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGCACACACACACACATACACTCACATACACACACACGTGAGAG  900

seq1  AGA-GAGAGAGAAAGAGAGAGAGAGTAATGAAACTAGTCATAAAATATCA  949
      ||| ||||||| ||||||||||||||||||||||||||||||||  ||  
seq2  AGAGGAGAGAGGAAGAGAGAGAGAGTAATGAAACTAGTCATAAATAATAC  950

seq1  CATATCACAAATG-TCTGTATA-TTGAACA-CATAGTTCTTGGAAGAGGT  996
      ||||||||||||| |||||||| ||||||| |||||||||||||  | ||
seq2  CATATCACAAATGTTCTGTATATTTGAACACCATAGTTCTTGGAGAAAGT  1000

seq1  A--CATCT-AGAAAATGGTTGAAATGGGG---TTTAGTGGGAA  1033
      |   |||| | ||||||||||||||||||   |||||||||||
seq2  ATCTATCTAAAAAAATGGTTGAAATGGGGGGTTTTAGTGGGAA  1043