BAC Information

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BAC

Clone NameB6Ng01-110F03
Chromosome8 (Build37)
Map Location 94,448,699 - 94,605,137
singlet/doubletdoublet
Overlap genenone
Upstream geneChd9, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
Downstream gene4933436C20Rik, Irx5, Irx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110F03.bB6Ng01-110F03.g
ACCDH916975DH916976
length7451,107
definitionDH916975|Mus musculus domesticus DNA, BAC clone: B6Ng01-110F03, 5' end.DH916976|Mus musculus domesticus DNA, BAC clone: B6Ng01-110F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,604,393 - 94,605,137)(94,448,699 - 94,449,820)
sequence
gaattccaagctccctcccaaagtgggacgagaatccaggaagcagggaa
gacaggatgacacgaagcagtggcctctgagagcgtggatgtgggggagc
cgcagccttggcatctctttctatcctgctgctgaaggcagggccatttt
ccacattccccttcattaaacaagaaactcagatgttggtaattagactg
ccgtccccagctgccaagtcgcattcagttccaaaaagccctgtatgctg
ctacttgtgtgtttgttaacaatgtccccacaacaggtcggcaattagag
tccatctgttcattttctccaatggtggggacttggaggattccaggttg
tgggtttctcctgactggaaaccacgctccacagctcatgggccccttac
taggtgtcttgagctggaggctcctgctagcactgagtcctagcaagcac
tcagtgtggatatggtttgataaaggctagcagaggtagatccatgcatc
ttgtagagtacctgtgctcgccccctcccccaccatctaaaacagtctct
tcctttccccagcttaccagtccattggtctggaaacatagatttaaatg
attttattaaaattaagtatctttttttcgaagagagaagttgggaaagg
aagcaggctcaggtgtgggaggagatgggggagttgtgcagaggtgtaca
gcaatgggggatggggaactgggggtcagatgtcccagataccag
gaattctgagaaatgaggacactcccaaagactgccagtccactccgtaa
ggctattttcaccttgcccacagtggccacgccccttctctgccctaagg
acaaactgcagtgtataagcttgaaagacactggccagtttggtcctgag
gtgtggggtacagctattgctgtgggtagagaacacagagtcataagggc
tgggggctgcagggtattctttgtgaactgacctcagccagcccttctgc
aaagtgacagagtttgcagtgttgtgggatggaagaaaatggcagagcta
tgaaggtaggcttccggtaaccagacaacctccagtgtcaagatctaagc
tctgccccggtgggatttccaaatattgggaggaaaaggtagggagtaga
tataaaataacatgcgtgtatatattctatatagaactccttccactatc
attaatatattctatataaaactatctatctataaatcattctatataga
actatctatgtgtcattaatagtcatggcattttcccgactctccactga
tgcaattggcctgtgatcctctggtcagggctcagggattagatgctgct
ccgggaggcttggaggcccttaaaactgtgcttgatttgagttaagttct
acaggtactggtattaccttggagactcaaagggttgggaagggaagatt
aactctgacctgtgtaagggtgggcctggagcaaggattctcatgagaag
cttcagctcagagagggcatgacctccgccacgatcacttgtcactcaga
gtagataggtagaatacactagctatttgtctgcatctctgctccgagtt
gtgttgggcctctgttgacggattgaaagccaggaggcatggaactccag
gaatggtacagtggggtcagcctcccagggttgcaacacaagaggggtat
gtatggcagttgaaagaccatcatgaggaaaagacaggaacttggtcatg
tcactaactaatctggcatcatattaagctggaccaggaagtccttctat
gaaagaactgtcaccagttggtattaactaaaatcctccttgaggcaatt
aaatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_94604393_94605137
seq2: B6Ng01-110F03.b_47_791 (reverse)

seq1  CTGGTATCTGGGACATCTGGACCCCAGTTCCCCATCCCCCATTGCTGTAC  50
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  CTGGTATCTGGGACATCTGACCCCCAGTTCCCCATCCCCCATTGCTGTAC  50

seq1  ACCTCTGCACAACTCCCCCATCTCCTCCCACACCTGAGCCTGCTTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCACAACTCCCCCATCTCCTCCCACACCTGAGCCTGCTTCCTTT  100

seq1  CCCAACTTCTCTCTTCGAAAAAAAGATACTTAATTTTAATAAAATCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTCTCTCTTCGAAAAAAAGATACTTAATTTTAATAAAATCATTT  150

seq1  AAATCTATGTTTCCAGACCAATGGACTGGTAAGCTGGGGAAAGGAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATGTTTCCAGACCAATGGACTGGTAAGCTGGGGAAAGGAAGAGA  200

seq1  CTGTTTTAGATGGTGGGGGAGGGGGCGAGCACAGGTACTCTACAAGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAGATGGTGGGGGAGGGGGCGAGCACAGGTACTCTACAAGATGC  250

seq1  ATGGATCTACCTCTGCTAGCCTTTATCAAACCATATCCACACTGAGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCTACCTCTGCTAGCCTTTATCAAACCATATCCACACTGAGTGCT  300

seq1  TGCTAGGACTCAGTGCTAGCAGGAGCCTCCAGCTCAAGACACCTAGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGACTCAGTGCTAGCAGGAGCCTCCAGCTCAAGACACCTAGTAAG  350

seq1  GGGCCCATGAGCTGTGGAGCGTGGTTTCCAGTCAGGAGAAACCCACAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCATGAGCTGTGGAGCGTGGTTTCCAGTCAGGAGAAACCCACAACC  400

seq1  TGGAATCCTCCAAGTCCCCACCATTGGAGAAAATGAACAGATGGACTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCCTCCAAGTCCCCACCATTGGAGAAAATGAACAGATGGACTCTA  450

seq1  ATTGCCGACCTGTTGTGGGGACATTGTTAACAAACACACAAGTAGCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCGACCTGTTGTGGGGACATTGTTAACAAACACACAAGTAGCAGCA  500

seq1  TACAGGGCTTTTTGGAACTGAATGCGACTTGGCAGCTGGGGACGGCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGCTTTTTGGAACTGAATGCGACTTGGCAGCTGGGGACGGCAGTC  550

seq1  TAATTACCAACATCTGAGTTTCTTGTTTAATGAAGGGGAATGTGGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACCAACATCTGAGTTTCTTGTTTAATGAAGGGGAATGTGGAAAAT  600

seq1  GGCCCTGCCTTCAGCAGCAGGATAGAAAGAGATGCCAAGGCTGCGGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGCCTTCAGCAGCAGGATAGAAAGAGATGCCAAGGCTGCGGCTCC  650

seq1  CCCACATCCACGCTCTCAGAGGCCACTGCTTCGTGTCATCCTGTCTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATCCACGCTCTCAGAGGCCACTGCTTCGTGTCATCCTGTCTTCCC  700

seq1  TGCTTCCTGGATTCTCGTCCCACTTTGGGAGGGAGCTTGGAATTC  745
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGGATTCTCGTCCCACTTTGGGAGGGAGCTTGGAATTC  745

seq1: chr8_94448699_94449820
seq2: B6Ng01-110F03.g_66_1172

seq1  GAATTCTGAGAAATGAGGACACTCCCAAAGACTGCCAGTCCACTCCGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGAAATGAGGACACTCCCAAAGACTGCCAGTCCACTCCGTAA  50

seq1  GGCTATTTTCACCTTGCCCACAGTGGCCACGCCCCTTCTCTGCCCTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTTTCACCTTGCCCACAGTGGCCACGCCCCTTCTCTGCCCTAAGG  100

seq1  ACAAACTGCAGTGTATAAGCTTGAAAGACACTGGCCAGTTTGGTCCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGCAGTGTATAAGCTTGAAAGACACTGGCCAGTTTGGTCCTGAG  150

seq1  GTGTGGGGTACAGCTATTGCTGTGGGTAGAGAACACAGAGTCATAAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGGTACAGCTATTGCTGTGGGTAGAGAACACAGAGTCATAAGGGC  200

seq1  TGGGGGCTGCAGGGTATTCTTTGTGAACTGACCTCAGCCAGCCCTTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCTGCAGGGTATTCTTTGTGAACTGACCTCAGCCAGCCCTTCTGC  250

seq1  AAAGTGACAGAGTTTGCAGTGTTGTGGGATGGAAGAAAATGGCAGAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACAGAGTTTGCAGTGTTGTGGGATGGAAGAAAATGGCAGAGCTA  300

seq1  TGAAGGTAGGCTTCCGGTAACCAGACAACCTCCAGTGTCAAGATCTAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTAGGCTTCCGGTAACCAGACAACCTCCAGTGTCAAGATCTAAGC  350

seq1  TCTGCCCCGGTGGGATTTCCAAATATTGGGAGGAAAAGGTAGGGAGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCGGTGGGATTTCCAAATATTGGGAGGAAAAGGTAGGGAGTAGA  400

seq1  TATAAAATAACATGCGTGTATATATTCTATATAGAACTCCTTCCACTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAACATGCGTGTATATATTCTATATAGAACTCCTTCCACTATC  450

seq1  ATTAATATATTCTATATAAAACTATCTATCTATAAATCATTCTATATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATATTCTATATAAAACTATCTATCTATAAATCATTCTATATAGA  500

seq1  ACTATCTATGTGTCATTAATAGTCATGGCATTTTCCCGACTCTCCACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTATGTGTCATTAATAGTCATGGCATTTTCCCGACTCTCCACTGA  550

seq1  TGCAATTGGCCTGTGATCCTCTGGTCAGGGCTCAGGGATTAGATGCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGGCCTGTGATCCTCTGGTCAGGGCTCAGGGATTAGATGCTGCT  600

seq1  CCGGGAGGCTTGGAGGCCCTTAAAACTGTGCTTGATTTGAGTTAAGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAGGCTTGGAGGCCCTTAAAACTGTGCTTGATTTGAGTTAAGTTCT  650

seq1  ACAGGTACTGGTATTACCTTGGAGACTCAAAGGGTTGGGAAGGGAAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTACTGGTATTACCTTGGAGACTCAAAGGGTTGGGAAGGGAAGATT  700

seq1  AACTCTGACCTGTGTAAGGGTGGGCCTGGAGCAAGGATTCTCATGAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGACCTGTGTAAGGGTGGGCCTGGAGCAAGGATTCTCATGAGAAG  750

seq1  CTTCAGCTCAGGAGAGGGCATGACCTCCGCCACGATCACTTGTCACTCAG  800
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTCA-GAGAGGGCATGACCTCCGCCACGATCACTTGTCACTCAG  799

seq1  AGTAGATAGGTAGAATACACTAGCTATTTGTCTGCATCTCTGCTCCGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATAGGTAGAATACACTAGCTATTTGTCTGCATCTCTGCTCCGAGT  849

seq1  TGTGTTGGGCCTCTGTTGACGGATTGAAAGCCAGGAGGCATGGAACTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGGCCTCTGTTGACGGATTGAAAGCCAGGAGGCATGGAACTCCA  899

seq1  GGAATGGTACAGGTGGGGTCAGCCTCCCAGGGGTTGCCACACAAGAGGGG  950
      ||||||||||| ||||||||||||||||| ||||||| |||||||| |||
seq2  GGAATGGTACA-GTGGGGTCAGCCTCCCA-GGGTTGCAACACAAGA-GGG  946

seq1  GTATGTATGGCAGGTGGAAGGACCATCATGGAGAATAGACAGGGGAACCT  1000
      |||||||||||| || ||| ||||||||||  ||| |||||||   | ||
seq2  GTATGTATGGCA-GTTGAAAGACCATCATGAGGAAAAGACAGG---AACT  992

seq1  TGGTCATTGGTCACTAACTAAATCTGGCATCATATCAGCCTGGGACCAGG  1050
      |||||||  |||||||||| ||||||||||||||| |  || ||||||||
seq2  TGGTCAT--GTCACTAACT-AATCTGGCATCATATTAAGCT-GGACCAGG  1038

seq1  AAAGTCCTTCCTAGAA--GACTGTCATCCAAGTTGGTATTAACCTATAAT  1098
       |||||||||   |||   |||||||  | |||||||||||||   ||| 
seq2  -AAGTCCTTCTATGAAAGAACTGTCA--CCAGTTGGTATTAAC---TAAA  1082

seq1  TTCTGCCTTGAGGCAATT-AATGTC  1122
       ||  ||||||||||||| ||||||
seq2  ATCCTCCTTGAGGCAATTAAATGTC  1107