BAC Information

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BAC

Clone NameB6Ng01-110H07
Chromosome8 (Build37)
Map Location 105,303,983 - 105,408,171
singlet/doubletdoublet
Overlap geneCdh11, EG667618
Upstream genenone
Downstream geneLOC100041368, 1600027J07Rik, LOC100041397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110H07.bB6Ng01-110H07.g
ACCDH917073DH917074
length1,193990
definitionDH917073|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H07, 5' end.DH917074|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,303,983 - 105,305,204)(105,407,166 - 105,408,171)
sequence
gaattctactgctgaactaccagggaagcaactctattcggtaaataaat
aaataaataaatgcagaactatccacttaaagctgtacttatttttaata
gatttttcctcttaattatgacatagcattagttcttcagttcttctgaa
cggtagcaatgacaccaccaaacagtagcaaatataagtttctacagccc
caaatatgcaatttaatcataaactatcctgtccgtatcactgaagaaag
gaagaaagaaagggagaaagaaagaagaaaagaaagaaagaaagaaataa
cccttaatggttaaaccccagtgattgaggactaaatttgaattaaattt
tattctgtgataaagttaggttttatacagcaatatcagggatgagttaa
gagtaatagtaaaacatctgctgctatattaaaactgcatactccaaagt
gtttaccaaaaattaaactgcacttattttacttacttatttatttattt
atttatttattttgcagattgcaagtgtctcgcagatgtctttaaaacct
cttgaaagaagaggtaatgttattaaatacacatcaggactactcccctc
ccccacttctaattcatcccgttctccttcccaaatcaaaatgctcttcc
tacccaaacaaacaaaatcagcatcacctattcatccatctccatacatg
tgcacatctggcacatagctgcctcggtgacagctaaccttagcttatca
tcggctcaaccccaatcctcaggctttgtcttagacaatgtcaagtcaca
aaaattcccaactttctagcaaagtccaaagaaggacgaaaagactgccg
gtaacaaatcctcccactcggaagacggtcatgcacacaatctaccggag
cagagcccgagctgcggagacaggaatctgggcctcttcgcagagtgcag
acagactagtaacaaaactgcttttcacgtgccctcaaaagcagaggggc
tcatgtcgaaagtgagaagtcacattgcctctagtgtcaaagcgcatctt
cgcaagagtcattcccatagatgcacagtctctcatgtcagtgcaatgta
aacagaagatgtttagtatcctccttcactcttgtttctttagtctcaca
taggtgacctctgatgacacctcaagtcattcgatggactggt
gaattccttagcattcacatttcctggctccttcctaaatgcttctcatc
tttactctgagtattttttttagtagataaataacagcaggtgaaacact
tacaaaactgaaaataaaaggaaccagtaaaaggatctattattttacct
tgtaatttttttccagggggagaggtcactgttgctctgttctaactttt
gcattccagggccatggatatttgcaacaagatcatttggaaacattttg
tgattgttagtgttgttgttaagaatgcatctctccccttccagcatgca
accctgggttccctatgactttatcctctactcacccacaacctattgtt
ttaccttgggctgccttctcaaccactgtggcctccagaagaatcagact
ctgctgggaatagatccctcttttgcttctcaaaaaatacctaggacacc
tattacctttttagagggttgttatacaataccttgggtcatttaaagct
ctgaaaccacacttgatgggttagagtcagtttaatccttattggtagat
taagaaaaaaggatgggggccagagagatagttaagaatactggctgttc
ttccaaagatcctgggttcaactcccagaacccacatggcagttcaaaac
tatctgttaactccaggtccaggggatcctacaccatcacaagtctttgt
gttggcaaaacaccaatgcgcatgaaatgaaaataaaccttttttttttt
tttaaaaaaagaagagagtatcagcattgtaaagtatgctggggctgact
acaaagattgtgtcagtgacctttaatagctgacaaacaatgatatctgg
ggccaattttggtactataattttgcccaggctctgtgggagctgcagtg
gagcctcatactactaatgtcactatctggcccaggaaagtttccagcag
ttaaaccctgagactagggtgtatatttagcactatataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105303983_105305204
seq2: B6Ng01-110H07.b_46_1238

seq1  GAATTCTACTGCTGAACTACCAGGGAAGCAACTCTATTCGGTAAATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTGCTGAACTACCAGGGAAGCAACTCTATTCGGTAAATAAAT  50

seq1  AAATAAATAAATGCAGAACTATCCACTTAAAGCTGTACTTATTTTTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATGCAGAACTATCCACTTAAAGCTGTACTTATTTTTAATA  100

seq1  GATTTTTCCTCTTAATTATGACATAGCATTAGTTCTTCAGTTCTTCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCCTCTTAATTATGACATAGCATTAGTTCTTCAGTTCTTCTGAA  150

seq1  CGGTAGCAATGACACCACCAAACAGTAGCAAATATAAGTTTCTACAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGCAATGACACCACCAAACAGTAGCAAATATAAGTTTCTACAGCCC  200

seq1  CAAATATGCAATTTAATCATAAACTATCCTGTCCGTATCACTGAAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGCAATTTAATCATAAACTATCCTGTCCGTATCACTGAAGAAAG  250

seq1  GAAGAAAGAAAGGGAGAAAGAAAGAAGAAAAGAAAGAAAGAAAGAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAAAGGGAGAAAGAAAGAAGAAAAGAAAGAAAGAAAGAAATAA  300

seq1  CCCTTAATGGTTAAACCCCAGTGATTGAGGACTAAATTTGAATTAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAATGGTTAAACCCCAGTGATTGAGGACTAAATTTGAATTAAATTT  350

seq1  TATTCTGTGATAAAGTTAGGTTTTATACAGCAATATCAGGGATGAGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTGATAAAGTTAGGTTTTATACAGCAATATCAGGGATGAGTTAA  400

seq1  GAGTAATAGTAAAACATCTGCTGCTATATTAAAACTGCATACTCCAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATAGTAAAACATCTGCTGCTATATTAAAACTGCATACTCCAAAGT  450

seq1  GTTTACCAAAAATTAAACTGCACTTATTTTACTTACTTATTTATTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCAAAAATTAAACTGCACTTATTTTACTTACTTATTTATTTATTT  500

seq1  ATTTATTTATTTTGCAGATTGCAAGTGTCTCGCAGATGTCTTTAAAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTTGCAGATTGCAAGTGTCTCGCAGATGTCTTTAAAACCT  550

seq1  CTTGAAAGAAGAGGTAATGTTATTAAATACACATCAGGACTACTCCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGAAGAGGTAATGTTATTAAATACACATCAGGACTACTCCCCTC  600

seq1  CCCCACTTCTAATTCATCCCGTTCTCCTTCCCAAATCAAAATGCTCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTTCTAATTCATCCCGTTCTCCTTCCCAAATCAAAATGCTCTTCC  650

seq1  TACCCAAACAAACAAAATCAGCATCACCTATTCATCCATCTCCATACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAACAAACAAAATCAGCATCACCTATTCATCCATCTCCATACATG  700

seq1  TGCACATCTGGCACATAGCTGCCTCGGTGACAGCTAACCTTAGCTTATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATCTGGCACATAGCTGCCTCGGTGACAGCTAACCTTAGCTTATCA  750

seq1  TCGGCTCAACCCCAATCCTCAGGCTTTGTCTTAGACAATGTCAAGTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTCAACCCCAATCCTCAGGCTTTGTCTTAGACAATGTCAAGTCACA  800

seq1  AAAATTCCCAACTTTCTAGCAAAGTCCAAAGAAGGACGAAAAGACTGCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCCAACTTTCTAGCAAAGTCCAAAGAAGGACGAAAAGACTGCCG  850

seq1  GTAACAAATCCTCCCACTCGGAAGACGGTCATGCACACAATCTACCGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAATCCTCCCACTCGGAAGACGGTCATGCACACAATCTACCGGAG  900

seq1  CAGAGCCCGAGCTGCGGAGACAGGAATCT-GGCCTCTTCGCAGAGGTGCA  949
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  CAGAGCCCGAGCTGCGGAGACAGGAATCTGGGCCTCTTCGCAGA-GTGCA  949

seq1  GACAAGACTAGTAACAAAACTGCTTTTCACGGTGCCCTCAAAAAGCAGAG  999
      ||| |||||||||||||||||||||||||| |||||||| ||||||||||
seq2  GAC-AGACTAGTAACAAAACTGCTTTTCAC-GTGCCCTC-AAAAGCAGAG  996

seq1  GGGCTCCATGTCGAAAGTTGGAGAAGGTCACCATTGCCCTCTAGTGGCCA  1049
      ||||| ||||||||||||  ||||| |||| ||||| ||||||||| |  
seq2  GGGCT-CATGTCGAAAGT--GAGAA-GTCA-CATTG-CCTCTAGTGTC--  1038

seq1  AAAGCGCAATCTTCCGCAAAGGAGTCCATTCCCATAGATGCACAAGTCTC  1099
      ||||||| ||||| |||||  |||| ||||||||||||||||| ||||||
seq2  AAAGCGC-ATCTT-CGCAA--GAGT-CATTCCCATAGATGCAC-AGTCTC  1082

seq1  TCAATGTCAGTGCAAATGTAAAGCAGAAAGATGTTTAGTTATCCTCCTTC  1149
      || |||||||||| |||||||| ||| ||||||||||| |||||||||||
seq2  TC-ATGTCAGTGC-AATGTAAA-CAG-AAGATGTTTAG-TATCCTCCTTC  1127

seq1  ACTCT--GTTCTTTAGTCCTTCCAACATAGAGTGGAAACTCTAGATGAC-  1196
      |||||   ||||||||||  ||  |||||| |||  | |||| |||||| 
seq2  ACTCTTGTTTCTTTAGTC--TC--ACATAG-GTG--ACCTCT-GATGACA  1169

seq1  CATCACAGTCATTCTGATGGACTGGT  1222
      | ||| |||||||| |||||||||||
seq2  CCTCA-AGTCATTC-GATGGACTGGT  1193

seq1: chr8_105407166_105408171
seq2: B6Ng01-110H07.g_66_1055 (reverse)

seq1  TTATATTAGTGCTTAAATTATACACCCCTAGTCTCCAGGGGTTTAAACTT  50
      ||||| |||||||  || |||||| ||||||||| |||||  || |||| 
seq2  TTATA-TAGTGCT--AAATATACA-CCCTAGTCT-CAGGG--TTTAACT-  42

seq1  GGCTGGGAAAACTTTTCCTGGGGCCAGATAGTGACATTAGTAGTATGAGG  100
       |||||  |||| |||||| ||||||||||||||||||||||||||||||
seq2  -GCTGG--AAAC-TTTCCT-GGGCCAGATAGTGACATTAGTAGTATGAGG  87

seq1  CTTCCACTGCAGCTTCCCACAGAGCCTGGGGCAAAATTATAGTACCAAAA  150
      | ||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  C-TCCACTGCAGC-TCCCACAGAGCCT-GGGCAAAATTATAGTACCAAAA  134

seq1  TTGGCCCCAGATATCATTGTTTGTCAGCTATTAAAGGTCACTGACACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCCAGATATCATTGTTTGTCAGCTATTAAAGGTCACTGACACAAT  184

seq1  CTTTGTAGTCAGCCCCAGCATACTTTACAATGCTGATACTCTCTTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGTCAGCCCCAGCATACTTTACAATGCTGATACTCTCTTCTTTT  234

seq1  TTTAAAAAAAAAAAAAAGGTTTATTTTCATTTCATGCGCATTGGTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAAAAAAAAGGTTTATTTTCATTTCATGCGCATTGGTGTTTT  284

seq1  GCCAACACAAAGACTTGTGATGGTGTAGGATCCCCTGGACCTGGAGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACACAAAGACTTGTGATGGTGTAGGATCCCCTGGACCTGGAGTTAA  334

seq1  CAGATAGTTTTGAACTGCCATGTGGGTTCTGGGAGTTGAACCCAGGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGTTTTGAACTGCCATGTGGGTTCTGGGAGTTGAACCCAGGATCT  384

seq1  TTGGAAGAACAGCCAGTATTCTTAACTATCTCTCTGGCCCCCATCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAACAGCCAGTATTCTTAACTATCTCTCTGGCCCCCATCCTTTT  434

seq1  TTCTTAATCTACCAATAAGGATTAAACTGACTCTAACCCATCAAGTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATCTACCAATAAGGATTAAACTGACTCTAACCCATCAAGTGTGG  484

seq1  TTTCAGAGCTTTAAATGACCCAAGGTATTGTATAACAACCCTCTAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGCTTTAAATGACCCAAGGTATTGTATAACAACCCTCTAAAAAG  534

seq1  GTAATAGGTGTCCTAGGTATTTTTTGAGAAGCAAAAGAGGGATCTATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGGTGTCCTAGGTATTTTTTGAGAAGCAAAAGAGGGATCTATTCC  584

seq1  CAGCAGAGTCTGATTCTTCTGGAGGCCACAGTGGTTGAGAAGGCAGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGTCTGATTCTTCTGGAGGCCACAGTGGTTGAGAAGGCAGCCCA  634

seq1  AGGTAAAACAATAGGTTGTGGGTGAGTAGAGGATAAAGTCATAGGGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAACAATAGGTTGTGGGTGAGTAGAGGATAAAGTCATAGGGAACC  684

seq1  CAGGGTTGCATGCTGGAAGGGGAGAGATGCATTCTTAACAACAACACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGCATGCTGGAAGGGGAGAGATGCATTCTTAACAACAACACTAA  734

seq1  CAATCACAAAATGTTTCCAAATGATCTTGTTGCAAATATCCATGGCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACAAAATGTTTCCAAATGATCTTGTTGCAAATATCCATGGCCCTG  784

seq1  GAATGCAAAAGTTAGAACAGAGCAACAGTGACCTCTCCCCCTGGAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAAAAGTTAGAACAGAGCAACAGTGACCTCTCCCCCTGGAAAAAA  834

seq1  ATTACAAGGTAAAATAATAGATCCTTTTACTGGTTCCTTTTATTTTCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGGTAAAATAATAGATCCTTTTACTGGTTCCTTTTATTTTCAGT  884

seq1  TTTGTAAGTGTTTCACCTGCTGTTATTTATCTACTAAAAAAAATACTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGTGTTTCACCTGCTGTTATTTATCTACTAAAAAAAATACTCAG  934

seq1  AGTAAAGATGAGAAGCATTTAGGAAGGAGCCAGGAAATGTGAATGCTAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGATGAGAAGCATTTAGGAAGGAGCCAGGAAATGTGAATGCTAAG  984

seq1  GAATTC  1006
      ||||||
seq2  GAATTC  990