BAC Information

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BAC

Clone NameB6Ng01-110J01
Chromosome8 (Build37)
Map Location 107,882,757 - 108,069,052
singlet/doubletdoublet
Overlap geneSlc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1
Upstream geneCmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1
Downstream geneAgrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110J01.bB6Ng01-110J01.g
ACCDH917149DH917150
length9331,100
definitionDH917149|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J01, 5' end.DH917150|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,882,757 - 107,883,694)(108,067,947 - 108,069,052)
sequence
gaattcagtgtgaagtgtttcagtgtctgctgtaacaaataacaaaataa
tgcccgtgggtatagctcaacggtttaccacttgtgtagcattcaagaac
ctgggtgatccccagccctggctcaaaacaaaagtgttcaaaataattgt
taacgcttgtaattctttttattactctctgtctgggccccctcctcatc
tgacccttgtctgacctctgtcttgactcctacagggaggccatgtcttg
tcctccacaggactcactctgccctctatgcctagcagaaattctgtggc
agagacctctgtcaccaacctgttgtgagtccacgagccgctccctcttc
ccttcccccaagctcttctccccagatccctctggggagggacgtgtcaa
caccttgcctgtgcccttcccctcacctgtcctgcccagtcctcagcaca
cttatccctgcctcccacaggagggagagcggcagtggagcgtgtctgga
tctgcaggtgattgacacggtgcgcagcggccgagaccgggaggatgccg
tgatgcatcatctgctctgtggaggcctctacaagccacggcgcagggtg
agggcttgcaggatgtgggaggagttcccagggtggtggggagtggatgg
tagagcccatgatcggagactcttcgggcattcggttgtaatgaattgaa
ttgaaagctgaacaggttgggactctagaaaggaacactttggactcgaa
actgggctttaggaaggagaggagcacccatgctaatgtccctgagggga
gaggaagagacagaggacagggagctttgaggatgcatgtcaaagggaag
cagggacctgagaaggccctccgaatcttttaggagagagaggcggttag
tcctgtgcaaattaggcagctttggagctttga
gaattctaacccagcttgtcctagccctggccaggcctgtctgaagggct
tagggttgccagccactgtttctgggcgccaggtttctccaacagggtca
gaactggtttagaagccctgtgtggtcccctcgtgggcgagctaaggaat
cagcctgtctccctccctccagttgccttggctggcaggctgtccctttt
cccttggtcacagggaaatgtgggtcttagccagagaaagtggtctggaa
ctggccctttgacattgtctctgggggcttttaaaaatgagtttcctggt
aaggcagactcttccagccttgggcaggattctcagtagagtctcccggg
tttgctctgatctgacaaactccagcagaaaccacccagccgcctgcatt
ccagcagtgctcagagccgtggcttctcccgatgcagtgtcagcagaatg
cagcaatggaagcacaggggtgtctgctctgaagcttgtgtgaagtccca
ggggtggggctgtacaaaggagcattctagctttgttctgctcaacccca
agcatattttcctaccttctttagtaatggttgatgtcaaaagtgatgct
agtgggatttgtcactgagtcatgagagtgtgggcctatgcctactattg
acaagtgggcagtgagtgtccaggtggtctgcaagccagtggtcaactct
tctggctttaaaggctgtttggacagctggttctatacctaaaaggtctg
ctctaccaatgtgttcaaggaggctcagagaacaaaagacagccgaggtg
gggactgacagagtcccaccaggcctgcctgatatcctagcctctctata
ctcttgactgtgagactctggacaaggttctggcttttaattgatagcct
ttgaaattgacatgtctgagaggtcagcacaagatgctcctggcatggag
gagaccattgcatagcctgtgtatgtcaggcttctgagttgaaacctccc
actggagttaccagtattgatgaaggactattcttggttgttaagaagaa
agtatttgtcagtcggaagttgctggagctagtcttcttgaaagagaagt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107882757_107883694
seq2: B6Ng01-110J01.b_43_975

seq1  GAATTCAGTGTGAAGTGTTTCAGTGTCTGCTGTAACAAATAACAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTGAAGTGTTTCAGTGTCTGCTGTAACAAATAACAAAATAA  50

seq1  TGCCCGTGGGTATAGCTCAACGGTTTACCACTTGTGTAGCATTCAAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGTGGGTATAGCTCAACGGTTTACCACTTGTGTAGCATTCAAGAAC  100

seq1  CTGGGTGATCCCCAGCCCTGGCTCAAAACAAAAGTGTTCAAAATAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGATCCCCAGCCCTGGCTCAAAACAAAAGTGTTCAAAATAATTGT  150

seq1  TAACGCTTGTAATTCTTTTTATTACTCTCTGTCTGGGCCCCCTCCTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCTTGTAATTCTTTTTATTACTCTCTGTCTGGGCCCCCTCCTCATC  200

seq1  TGACCCTTGTCTGACCTCTGTCTTGACTCCTACAGGGAGGCCATGTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTTGTCTGACCTCTGTCTTGACTCCTACAGGGAGGCCATGTCTTG  250

seq1  TCCTCCACAGGACTCACTCTGCCCTCTATGCCTAGCAGAAATTCTGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACAGGACTCACTCTGCCCTCTATGCCTAGCAGAAATTCTGTGGC  300

seq1  AGAGACCTCTGTCACCAACCTGTTGTGAGTCCACGAGCCGCTCCCTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTCTGTCACCAACCTGTTGTGAGTCCACGAGCCGCTCCCTCTTC  350

seq1  CCTTCCCCCAAGCTCTTCTCCCCAGATCCCTCTGGGGAGGGACGTGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCCAAGCTCTTCTCCCCAGATCCCTCTGGGGAGGGACGTGTCAA  400

seq1  CACCTTGCCTGTGCCCTTCCCCTCACCTGTCCTGCCCAGTCCTCAGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGCCTGTGCCCTTCCCCTCACCTGTCCTGCCCAGTCCTCAGCACA  450

seq1  CTTATCCCTGCCTCCCACAGGAGGGAGAGCGGCAGTGGAGCGTGTCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCCTGCCTCCCACAGGAGGGAGAGCGGCAGTGGAGCGTGTCTGGA  500

seq1  TCTGCAGGTGATTGACACGGTGCGCAGCGGCCGAGACCGGGAGGATGCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGTGATTGACACGGTGCGCAGCGGCCGAGACCGGGAGGATGCCG  550

seq1  TGATGCATCATCTGCTCTGTGGAGGCCTCTACAAGCCACGGCGCAGGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCATCATCTGCTCTGTGGAGGCCTCTACAAGCCACGGCGCAGGGTG  600

seq1  AGGGCTTGCAGGATGTGGGAGGAGTTCCCAGGGTGGTGGGGAGTGGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTGCAGGATGTGGGAGGAGTTCCCAGGGTGGTGGGGAGTGGATGG  650

seq1  TAGAGCCCATGATCGGAGACTCTTCGGGCATTCGGTTGTAATGAATTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCCATGATCGGAGACTCTTCGGGCATTCGGTTGTAATGAATTGAA  700

seq1  TTGAAAGCTGAACAGGTTGGGACTCTAGAAGGGAACACTTTGGACTCGAA  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGAAAGCTGAACAGGTTGGGACTCTAGAAAGGAACACTTTGGACTCGAA  750

seq1  ACTGGGCTTTAGGAAGGAGAGGAGCACCCATGGCTAATGTCCCTGAGGGG  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTGGGCTTTAGGAAGGAGAGGAGCACCCAT-GCTAATGTCCCTGAGGGG  799

seq1  AGAGGAAGAGACAGAGGACAGGGAGCTTTGAGGATGCAGGTCAAAGGGAA  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAGGAAGAGACAGAGGACAGGGAGCTTTGAGGATGCATGTCAAAGGGAA  849

seq1  GCAGGGACCTGAGAAGGCCTTCGGAATCAGTTTAAGGAGAGAGAGGCGGG  900
      ||||||||||||||||||| || |||||  ||| ||||||||||||| ||
seq2  GCAGGGACCTGAGAAGGCCCTCCGAATC--TTTTAGGAGAGAGAGGC-GG  896

seq1  TTAGTCCTGTGCAAAATCAGGCAGCTTTGGAGCTTTGA  938
      |||||||||||| |||| ||||||||||||||||||||
seq2  TTAGTCCTGTGC-AAATTAGGCAGCTTTGGAGCTTTGA  933

seq1: chr8_108067947_108069052
seq2: B6Ng01-110J01.g_66_1165 (reverse)

seq1  ACTTCTCTCTC-AGAAGACTAGCT-CAGCAACTTCCCCAACTGCCAAATA  48
      |||||||| || |||||||||||| |||||||||  || |||| ||||||
seq2  ACTTCTCTTTCAAGAAGACTAGCTCCAGCAACTT--CCGACTGACAAATA  48

seq1  CTTTCTCTTTAACAACCA--GATAGT-CTTCATCAAATACCTGGT-ACTC  94
      ||||||  ||||||||||   ||||| ||||||| |||| ||||| ||||
seq2  CTTTCTTCTTAACAACCAAGAATAGTCCTTCATC-AATA-CTGGTAACTC  96

seq1  CAGTGAGAGTTTTCACCTCAGAAGGCCTGGACATACACAGGCTATGCAAT  144
      ||||| ||| ||||| ||||||| |||| |||||||||||||||||||||
seq2  CAGTGGGAGGTTTCAACTCAGAA-GCCT-GACATACACAGGCTATGCAAT  144

seq1  GGTCTCCTTCCCATGCCAGGAGCAATCTTTGTGCTGGACCTCTCAGACAT  194
      ||||||||  ||||||||||||| ||| ||||||| ||||||||||||||
seq2  GGTCTCCT--CCATGCCAGGAGC-ATC-TTGTGCT-GACCTCTCAGACAT  189

seq1  GTCAATTTCAAAGGCTTATCAATTAAAAGCCAGAACCTTGTCCAGAGTCT  244
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTCAATTTCAAAGGC-TATCAATTAAAAGCCAGAACCTTGTCCAGAGTCT  238

seq1  CACAGTCAAGAGTATAGAGAGGCTAGGATATCAGGCAGGCCTGGTGGGAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCAAGAGTATAGAGAGGCTAGGATATCAGGCAGGCCTGGTGGGAC  288

seq1  TCTGTCAGTCCCCACCTCGGCTGTCTTTTGTTCTCTGAGCCTCCTTGAAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGTCCCCACCTCGGCTGTCTTTTGTTCTCTGAGCCTCCTTGAAC  338

seq1  ACATTGGTAGAGCAGACCTTTTAGGTATAGAACCAGCTGTCCAAACAGCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGTAGAGCAGACCTTTTAGGTATAGAACCAGCTGTCCAAACAGCC  388

seq1  TTTAAAGCCAGAAGAGTTGACCACTGGCTTGCAGACCACCTGGACACTCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCCAGAAGAGTTGACCACTGGCTTGCAGACCACCTGGACACTCA  438

seq1  CTGCCCACTTGTCAATAGTAGGCATAGGCCCACACTCTCATGACTCAGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACTTGTCAATAGTAGGCATAGGCCCACACTCTCATGACTCAGTG  488

seq1  ACAAATCCCACTAGCATCACTTTTGACATCAACCATTACTAAAGAAGGTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCCCACTAGCATCACTTTTGACATCAACCATTACTAAAGAAGGTA  538

seq1  GGAAAATATGCTTGGGGTTGAGCAGAACAAAGCTAGAATGCTCCTTTGTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATATGCTTGGGGTTGAGCAGAACAAAGCTAGAATGCTCCTTTGTA  588

seq1  CAGCCCCACCCCTGGGACTTCACACAAGCTTCAGAGCAGACACCCCTGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCACCCCTGGGACTTCACACAAGCTTCAGAGCAGACACCCCTGTG  638

seq1  CTTCCATTGCTGCATTCTGCTGACACTGCATCGGGAGAAGCCACGGCTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTGCTGCATTCTGCTGACACTGCATCGGGAGAAGCCACGGCTCT  688

seq1  GAGCACTGCTGGAATGCAGGCGGCTGGGTGGTTTCTGCTGGAGTTTGTCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGCTGGAATGCAGGCGGCTGGGTGGTTTCTGCTGGAGTTTGTCA  738

seq1  GATCAGAGCAAACCCGGGAGACTCTACTGAGAATCCTGCCCAAGGCTGGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAGCAAACCCGGGAGACTCTACTGAGAATCCTGCCCAAGGCTGGA  788

seq1  AGAGTCTGCCTTACCAGGAAACTCATTTTTAAAAGCCCCCAGAGACAATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGCCTTACCAGGAAACTCATTTTTAAAAGCCCCCAGAGACAATG  838

seq1  TCAAAGGGCCAGTTCCAGACCACTTTCTCTGGCTAAGACCCACATTTCCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGCCAGTTCCAGACCACTTTCTCTGGCTAAGACCCACATTTCCC  888

seq1  TGTGACCAAGGGAAAAGGGACAGCCTGCCAGCCAAGGCAACTGGAGGGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCAAGGGAAAAGGGACAGCCTGCCAGCCAAGGCAACTGGAGGGAG  938

seq1  GGAGACAGGCTGATTCCTTAGCTCGCCCACGAGGGGACCACACAGGGCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGGCTGATTCCTTAGCTCGCCCACGAGGGGACCACACAGGGCTT  988

seq1  CTAAACCAGTTCTGACCCTGTTGGAGAAACCTGGCGCCCAGAAACAGTGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCAGTTCTGACCCTGTTGGAGAAACCTGGCGCCCAGAAACAGTGG  1038

seq1  CTGGCAACCCTAAGCCCTTCAGACAGGCCTGGCCAGGGCTAGGACAAGCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAACCCTAAGCCCTTCAGACAGGCCTGGCCAGGGCTAGGACAAGCT  1088

seq1  GGGTTAGAATTC  1106
      ||||||||||||
seq2  GGGTTAGAATTC  1100