BAC Information

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BAC

Clone NameB6Ng01-110N04
Chromosome8 (Build37)
Map Location 63,070,804 - 63,271,945
singlet/doubletdoublet
Overlap geneMfap3l, LOC100040679
Upstream geneAadat
Downstream gene2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4, Palld, LOC100040872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110N04.bB6Ng01-110N04.g
ACCDH917339DH917340
length1,099805
definitionDH917339|Mus musculus domesticus DNA, BAC clone: B6Ng01-110N04, 5' end.DH917340|Mus musculus domesticus DNA, BAC clone: B6Ng01-110N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,270,832 - 63,271,945)(63,070,804 - 63,071,613)
sequence
gaattcatttctcatcagttttccacaaaagactccacaagttccaaagc
ctttgggagtattggcactggcaagctggaagttgtgtgtcaccacaatg
ggctgcaggccttcaacgatgggaacattttctatgatgcttattgcttg
gtttcagggacctgcccaccacaggtgccttagctggcctcatgattgtg
ttatggtttgaagtctgtgtagatgagaaaggggagggaccacatctaca
aaattttttctttatcagcttgcagaggcccacagaggcccacagaggct
cacagaggcccacagaggcccactgaggaccataggagccaggatccaac
ctcccaaatgcttgggcaatgtttagctgctccttttcaagttcctgctt
ctggatcatctcctcacaagcatagaattattgttcctgttccagccgct
gctgcttttgttgggcaactcccttttcccaactcttgctggatggccac
attccagtaagttcctcttcctttttattgtgttcttttcttgcttagag
tctttggtatatcttttcaagagtttagtctttcagttcttctgctttgg
ggaaagcagtattctgtcatttcctgaccacaactttcttctcaggagtg
atagttgatttgtagtctcagtgtttggaagttttccaatgaacactata
atatattcgttgtagagataggcatgttcaatgtcgtcttcttcagagta
catggataccatggggatgatgtcagcatcagaacaaaagtcgttatggg
gcagaatgtcactgtctaattcaacagcacttgggcagaatgtcttaatt
taactcaacagcactcccaagtagggaaagattcctcacccagtctgggg
tgggagatgaggttctcatgaacagaccttgggccataaattctttcctg
agatgacagttagagtttccagaaatgatctatttttatattctattata
gattttcctcttaagtgcattttatttaagaaagaaacatgagcacccct
agatgttcttgtcccacatcctggctttttttaggttactaataccttg
gaattccaagcccattttcttgctcaaggacgttctaggactgttggaat
actggcggaaggctttagccatgtcggaattcaattttaaaaggcactta
taataggaaaatactgaaagagagcatgtggatctatacactagactaac
gcagaaatggaacgcgggaatgaaaaattaatgtatgggtagagaacgct
agactccaggaggagagcttgcttgaaactcttttgcctcatgagtgact
tttaagcctttcggcttgtccaggtgactcgactggagaacgtagcatcc
cacaaggctcttctggactaaagagcaagcccagcgctagacaatgggaa
atattttcaaatcaaaatgtagtaccaagtaagtgttcaagaacctcaaa
ggaccaatcaggagctgatccaatgcaatcacacaaaggtctttattcat
aagctcaagcttgggcttgacccacaggatggttccagtggagtaaagcc
ttgaacactcatcagtataaggttttataggaaatgacaagcaaggggtt
agggtttctagcctggaaagcatctaattgaggggctactatggctttta
acataattggctggtgctgggagccaaaccataaacttaacttctgcttc
cctcctaattggtgattgttaggaagggttgggtttgtaacttgaaagtg
tgtatttgttgagtaataacctggaaactggtgctaggtggtgggtggat
ttgttatggtaaataaccggaactgatctaggctcatgtttgttgagggg
taact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_63270832_63271945
seq2: B6Ng01-110N04.b_48_1146 (reverse)

seq1  CAAGGTATTAGTAGAACTATAAAAAAGCAGAGATTGTGTGGACATGAACA  50
      ||||||||||||| | ||| ||||||||  ||  |||| ||||| |||||
seq2  CAAGGTATTAGTA-ACCTA-AAAAAAGC-CAGGATGTG-GGACAAGAACA  46

seq1  TCTAGGGGTGCTTCTTGTTTTCCTTTCTTAAATATAAATACACTTTAAGA  100
      ||||||||||| || |||||  |||||||||||| |||| ||| ||||||
seq2  TCTAGGGGTGC-TCATGTTT--CTTTCTTAAATA-AAATGCAC-TTAAGA  91

seq1  GGAAAAATCTATAAATAGAATAT-AAAATAGATCATTTCTGGAAACTCTA  149
      || ||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  GG-AAAATCTAT-AATAGAATATAAAAATAGATCATTTCTGGAAACTCTA  139

seq1  ACTGTCATCCTTCAGGAAAGAATTTATTGGCCCAAGGTCTGTTCATGAGA  199
      |||||||||  ||||||||||||||| |||||||||||||||||||||||
seq2  ACTGTCATC--TCAGGAAAGAATTTA-TGGCCCAAGGTCTGTTCATGAGA  186

seq1  ACCTCATTCTCCCACCCCAAGACTGGGTGAGGAATCTTTCCCTACTTGGG  249
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCTCA-TCTCCCACCCC-AGACTGGGTGAGGAATCTTTCCCTACTTGGG  234

seq1  AGTGCTGTTGAGTTAAATTAAGACATTCTGCCCAAGTGCTGTTGAATTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTTGAGTTAAATTAAGACATTCTGCCCAAGTGCTGTTGAATTAG  284

seq1  ACAGTGACATTCTGCCCCATAACGACTTTTGTTCTGATGCTGACATCATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACATTCTGCCCCATAACGACTTTTGTTCTGATGCTGACATCATC  334

seq1  CCCATGGTATCCATGTACTCTGAAGAAGACGACATTGAACATGCCTATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGTATCCATGTACTCTGAAGAAGACGACATTGAACATGCCTATCT  384

seq1  CTACAACGAATATATTATAGTGTTCATTGGAAAACTTCCAAACACTGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACGAATATATTATAGTGTTCATTGGAAAACTTCCAAACACTGAGA  434

seq1  CTACAAATCAACTATCACTCCTGAGAAGAAAGTTGTGGTCAGGAAATGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAATCAACTATCACTCCTGAGAAGAAAGTTGTGGTCAGGAAATGAC  484

seq1  AGAATACTGCTTTCCCCAAAGCAGAAGAACTGAAAGACTAAACTCTTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACTGCTTTCCCCAAAGCAGAAGAACTGAAAGACTAAACTCTTGAA  534

seq1  AAGATATACCAAAGACTCTAAGCAAGAAAAGAACACAATAAAAAGGAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATACCAAAGACTCTAAGCAAGAAAAGAACACAATAAAAAGGAAGA  584

seq1  GGAACTTACTGGAATGTGGCCATCCAGCAAGAGTTGGGAAAAGGGAGTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTACTGGAATGTGGCCATCCAGCAAGAGTTGGGAAAAGGGAGTTG  634

seq1  CCCAACAAAAGCAGCAGCGGCTGGAACAGGAACAATAATTCTATGCTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAAAAGCAGCAGCGGCTGGAACAGGAACAATAATTCTATGCTTGT  684

seq1  GAGGAGATGATCCAGAAGCAGGAACTTGAAAAGGAGCAGCTAAACATTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATGATCCAGAAGCAGGAACTTGAAAAGGAGCAGCTAAACATTGC  734

seq1  CCAAGCATTTGGGAGGTTGGATCCTGGCTCCTATGGTCCTCAGTGGGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATTTGGGAGGTTGGATCCTGGCTCCTATGGTCCTCAGTGGGCCT  784

seq1  CTGTGGGCCTCTGTGAGCCTCTGTGGGCCTCTGTGGGCCTCTGCAAGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCCTCTGTGAGCCTCTGTGGGCCTCTGTGGGCCTCTGCAAGCTG  834

seq1  ATAAAGAAAAAATTTTGTAGATGTGGTCCCTCCCCTTTCTCATCTACACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAAAAATTTTGTAGATGTGGTCCCTCCCCTTTCTCATCTACACA  884

seq1  GACTTCAAACCATAACACAATCATGAGGCCAGCTAAGGCACCTGTGGTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAAACCATAACACAATCATGAGGCCAGCTAAGGCACCTGTGGTGG  934

seq1  GCAGGTCCCTGAAACCAAGCAATAAGCATCATAGAAAATGTTCCCATCGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCCCTGAAACCAAGCAATAAGCATCATAGAAAATGTTCCCATCGT  984

seq1  TGAAGGCCTGCAGCCCATTGTGGTGACACACAACTTCCAGCTTGCCAGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCCTGCAGCCCATTGTGGTGACACACAACTTCCAGCTTGCCAGTG  1034

seq1  CCAATACTCCCAAAGGCTTTGGAACTTGTGGAGTCTTTTGTGGAAAACTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACTCCCAAAGGCTTTGGAACTTGTGGAGTCTTTTGTGGAAAACTG  1084

seq1  ATGAGAAATGAATTC  1114
      |||||||||||||||
seq2  ATGAGAAATGAATTC  1099

seq1: chr8_63070804_63071613
seq2: B6Ng01-110N04.g_68_872

seq1  GAATTCCAAGCCCATTTTCTTGCTCAAGGACGTTCTAGGACTGTTGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCATTTTCTTGCTCAAGGACGTTCTAGGACTGTTGGAAT  50

seq1  ACTGGCGGAAGGCTTTAGCCATGTCGGAATTCAATTTTAAAAGGCACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCGGAAGGCTTTAGCCATGTCGGAATTCAATTTTAAAAGGCACTTA  100

seq1  TAATAGGAAAATACTGAAAGAGAGCATGTGGATCTATACACTAGACTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGAAAATACTGAAAGAGAGCATGTGGATCTATACACTAGACTAAC  150

seq1  GCAGAAATGGAACGCGGGAATGAAAAATTAATGTATGGGTAGAGAACGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATGGAACGCGGGAATGAAAAATTAATGTATGGGTAGAGAACGCT  200

seq1  AGACTCCAGGAGGAGAGCTTGCTTGAAACTCTTTTGCCTCATGAGTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCAGGAGGAGAGCTTGCTTGAAACTCTTTTGCCTCATGAGTGACT  250

seq1  TTTAAGCCTTTCGGCTTGTCCAGGTGACTCGACTGGAGAACGTAGCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCTTTCGGCTTGTCCAGGTGACTCGACTGGAGAACGTAGCATCC  300

seq1  CACAAGGCTCTTCTGGACTAAAGAGCAAGCCCAGCGCTAGACAATGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCTCTTCTGGACTAAAGAGCAAGCCCAGCGCTAGACAATGGGAA  350

seq1  ATATTTTCAAATCAAAATGTAGTACCAAGTAAGTGTTCAAGAACCTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCAAATCAAAATGTAGTACCAAGTAAGTGTTCAAGAACCTCAAA  400

seq1  GGACCAATCAGGAGCTGATCCAATGCAATCACACAAAGGTCTTTATTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAATCAGGAGCTGATCCAATGCAATCACACAAAGGTCTTTATTCAT  450

seq1  AAGCTCAAGCTTGGGCTTGACCCACAGGATGGTTCCAGTGGAGTAAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAAGCTTGGGCTTGACCCACAGGATGGTTCCAGTGGAGTAAAGCC  500

seq1  TTGAACACTCATCAGTATAAGGTTTTATAGGAAATGACAAGCAAGGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACACTCATCAGTATAAGGTTTTATAGGAAATGACAAGCAAGGGGTT  550

seq1  AGGGTTTCTAGCCTGGAAAGCATCTAATTGAGGGGCTACTATGGCTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTAGCCTGGAAAGCATCTAATTGAGGGGCTACTATGGCTTTTA  600

seq1  ACATAATTGGCTGGTGCTGGGAGCCAAACCATAAACTTAACTTCTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTGGCTGGTGCTGGGAGCCAAACCATAAACTTAACTTCTGCTTC  650

seq1  CCTCCTAATTGGTGATTGTTAGGAAGGGTTGGGTTTGTAACTTGAAGGTG  700
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTCCTAATTGGTGATTGTTAGGAAGGGTTGGGTTTGTAACTTGAAAGTG  700

seq1  TGTATTTGTTGAGTAATAACCTGGAAACTGGTGCTAGGTGGTGGGTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTTGAGTAATAACCTGGAAACTGGTGCTAGGTGGTGGGTGGAT  750

seq1  TTGTTAAGGGAAAATAACCTGGAAACTGAATCTAGGCTCAGGTTTTGTTG  800
      ||||| | || ||||||||  | ||||| ||||||||||| | |||||||
seq2  TTGTT-ATGGTAAATAACC--GGAACTG-ATCTAGGCTCATG-TTTGTTG  795

seq1  AGGGGTAACT  810
      ||||||||||
seq2  AGGGGTAACT  805